Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 20

Results: 26

Protein-sol pKa: prediction of electrostatic frustration, with application to coronaviruses.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5112, doi. 10.1093/bioinformatics/btaa646

By:

Hebditch, Max;
Warwicker, Jim

Publication type:

Article

proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5107, doi. 10.1093/bioinformatics/btaa644

By:

Ambrosetti, Francesco;
Olsen, Tobias Hegelund;
Olimpieri, Pier Paolo;
Jiménez-García, Brian;
Milanetti, Edoardo;
Marcatilli, Paolo;
Bonvin, Alexandre M J J

Publication type:

Article

RecBic: a fast and accurate algorithm recognizing trend-preserving biclusters.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5054, doi. 10.1093/bioinformatics/btaa630

By:

Liu, Xiangyu;
Li, Di;
Liu, Juntao;
Su, Zhengchang;
Li, Guojun

Publication type:

Article

COVID-19 Docking Server: a meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5109, doi. 10.1093/bioinformatics/btaa645

By:

Kong, Ren;
Yang, Guangbo;
Xue, Rui;
Liu, Ming;
Wang, Feng;
Hu, Jianping;
Guo, Xiaoqiang;
Chang, Shan

Publication type:

Article

PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5117, doi. 10.1093/bioinformatics/btz858

By:

Bekkar, Amel;
Nasrallah, Anita;
Guex, Nicolas;
Fajas, Lluis;
Xenarios, Ioannis;
Lopez-Mejia, Isabel C

Publication type:

Article

2019 ISCB Innovator Award Recognizes William Stafford Noble.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5127, doi. 10.1093/bioinformatics/btz396

By:

Fogg, Christiana N;
Shamir, Ron;
Kovats, Diane E

Publication type:

Article

2019 Outstanding Contributions to ISCB Awarded to Barb Bryant.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5126, doi. 10.1093/bioinformatics/btz391

By:

Fogg, Christiana N;
Shamir, Ron;
Kovats, Diane E

Publication type:

Article

2019 ISCB Overton Prize: Christophe Dessimoz.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5124, doi. 10.1093/bioinformatics/btz390

By:

Fogg, Christiana N;
Shamir, Ron;
Kovats, Diane E

Publication type:

Article

GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5120, doi. 10.1093/bioinformatics/btaa647

By:

Magge, Arjun;
Weissenbacher, Davy;
O'Connor, Karen;
Tahsin, Tasnia;
Gonzalez-Hernandez, Graciela;
Scotch, Matthew

Publication type:

Article

Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5122, doi. 10.1093/bioinformatics/btz389

By:

Fogg, Christiana N;
Shamir, Ron;
Kovats, Diane E

Publication type:

Article

Numt identification and removal with RtN!

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5115, doi. 10.1093/bioinformatics/btaa642

By:

Woerner, August E;
Cihlar, Jennifer Churchill;
Smart, Utpal;
Budowle, Bruce

Publication type:

Article

qSNE: quadratic rate t-SNE optimizer with automatic parameter tuning for large datasets.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5086, doi. 10.1093/bioinformatics/btaa637

By:

Häkkinen, Antti;
Koiranen, Juha;
Casado, Julia;
Kaipio, Katja;
Lehtonen, Oskari;
Petrucci, Eleonora;
Hynninen, Johanna;
Hietanen, Sakari;
Carpén, Olli;
Pasquini, Luca;
Biffoni, Mauro;
Lehtonen, Rainer;
Hautaniemi, Sampsa

Publication type:

Article

TALC: Transcript-level Aware Long-read Correction.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5000, doi. 10.1093/bioinformatics/btaa634

By:

Broseus, Lucile;
Thomas, Aubin;
Oldfield, Andrew J;
Severac, Dany;
Dubois, Emeric;
Ritchie, William

Publication type:

Article

Enlighten2: molecular dynamics simulations of protein–ligand systems made accessible.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5104, doi. 10.1093/bioinformatics/btaa643

By:

Zinovjev, Kirill;
Kamp, Marc W van der

Publication type:

Article

Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5076, doi. 10.1093/bioinformatics/btaa624

By:

Russkikh, Nikolai;
Antonets, Denis;
Shtokalo, Dmitry;
Makarov, Alexander;
Vyatkin, Yuri;
Zakharov, Alexey;
Terentyev, Evgeny

Publication type:

Article

Galgo: a bi-objective evolutionary meta-heuristic identifies robust transcriptomic classifiers associated with patient outcome across multiple cancer types.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5037, doi. 10.1093/bioinformatics/btaa619

By:

Guerrero-Gimenez, M E;
Fernandez-Muñoz, J M;
Lang, B J;
Holton, K M;
Ciocca, D R;
Catania, C A;
Zoppino, F C M

Publication type:

Article

TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 4991, doi. 10.1093/bioinformatics/btaa632

By:

Lexa, Matej;
Jedlicka, Pavel;
Vanat, Ivan;
Cervenansky, Michal;
Kejnovsky, Eduard

Publication type:

Article

IDRMutPred: predicting disease-associated germline nonsynonymous single nucleotide variants (nsSNVs) in intrinsically disordered regions.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 4977, doi. 10.1093/bioinformatics/btaa618

By:

Zhou, Jing-Bo;
Xiong, Yao;
An, Ke;
Ye, Zhi-Qiang;
Wu, Yun-Dong

Publication type:

Article

RTExtract: time-series NMR spectra quantification based on 3D surface ridge tracking.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5068, doi. 10.1093/bioinformatics/btaa631

By:

Wu, Yue;
Judge, Michael T;
Arnold, Jonathan;
Bhandarkar, Suchendra M;
Edison, Arthur S

Publication type:

Article

OPUS-TASS: a protein backbone torsion angles and secondary structure predictor based on ensemble neural networks.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5021, doi. 10.1093/bioinformatics/btaa629

By:

Xu, Gang;
Wang, Qinghua;
Ma, Jianpeng

Publication type:

Article

Adaptive multiorientation resolution analysis of complex filamentous network images.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5093, doi. 10.1093/bioinformatics/btaa627

By:

Kittisopikul, Mark;
Vahabikashi, Amir;
Shimi, Takeshi;
Goldman, Robert D;
Jaqaman, Khuloud

Publication type:

Article

Automatic classification of single-molecule force spectroscopy traces from heterogeneous samples.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5014, doi. 10.1093/bioinformatics/btaa626

By:

Ilieva, Nina I;
Galvanetto, Nicola;
Allegra, Michele;
Brucale, Marco;
Laio, Alessandro

Publication type:

Article

Reanalysis of genome sequences of tomato accessions and its wild relatives: development of Tomato Genomic Variation (TGV) database integrating SNPs and INDELs polymorphisms.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 4984, doi. 10.1093/bioinformatics/btaa617

By:

Gupta, Prateek;
Dholaniya, Pankaj Singh;
Devulapalli, Sameera;
Tawari, Nilesh Ramesh;
Sreelakshmi, Yellamaraju;
Sharma, Rameshwar

Publication type:

Article

Information theoretic generalized Robinson–Foulds metrics for comparing phylogenetic trees.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5007, doi. 10.1093/bioinformatics/btaa614

By:

Smith, Martin R

Publication type:

Article

Efficient weighted univariate clustering maps outstanding dysregulated genomic zones in human cancers.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5027, doi. 10.1093/bioinformatics/btaa613

By:

Song, Mingzhou;
Zhong, Hua

Publication type:

Article

MDIPA: a microRNA–drug interaction prediction approach based on non-negative matrix factorization.

Published in:

Bioinformatics, 2020, v. 36, n. 20, p. 5061, doi. 10.1093/bioinformatics/btaa577

By:

Jamali, Ali Akbar;
Kusalik, Anthony;
Wu, Fang-Xiang

Publication type:

Article