Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 19

Results: 26

BYASE: a Python library for estimating gene and isoform level allele-specific expression.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4955, doi. 10.1093/bioinformatics/btaa636

By:

Dong, Lili;
Wang, Jianan;
Wang, Guohua

Publication type:

Article

EpiGEN: an epistasis simulation pipeline.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4957, doi. 10.1093/bioinformatics/btaa245

By:

Blumenthal, David B;
Viola, Lorenzo;
List, Markus;
Baumbach, Jan;
Tieri, Paolo;
Kacprowski, Tim

Publication type:

Article

RainbowSTORM: an open-source ImageJ plug-in for spectroscopic single-molecule localization microscopy (sSMLM) data analysis and image reconstruction.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4972, doi. 10.1093/bioinformatics/btaa635

By:

Davis, Janel L;
Soetikno, Brian;
Song, Ki-Hee;
Zhang, Yang;
Sun, Cheng;
Zhang, Hao F

Publication type:

Article

Seqminer2: an efficient tool to query and retrieve genotypes for statistical genetics analyses from biobank scale sequence dataset.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4951, doi. 10.1093/bioinformatics/btaa628

By:

Yang, Lina;
Jiang, Shuang;
Jiang, Bibo;
Liu, Dajiang J;
Zhan, Xiaowei

Publication type:

Article

PAFway: pairwise associations between functional annotations in biological networks and pathways.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4963, doi. 10.1093/bioinformatics/btaa639

By:

Mahjoub, Mahiar;
Ezer, Daphne

Publication type:

Article

AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4970, doi. 10.1093/bioinformatics/btaa638

By:

Neira, Gonzalo;
Cortez, Diego;
Jil, Joaquin;
Holmes, David S

Publication type:

Article

OCSANA+: optimal control and simulation of signaling networks from network analysis.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4960, doi. 10.1093/bioinformatics/btaa625

By:

Marazzi, Lauren;
Gainer-Dewar, Andrew;
Vera-Licona, Paola

Publication type:

Article

Inference of gene regulatory networks based on nonlinear ordinary differential equations.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4885, doi. 10.1093/bioinformatics/btaa032

By:

Ma, Baoshan;
Fang, Mingkun;
Jiao, Xiangtian

Publication type:

Article

ProVision: a web-based platform for rapid analysis of proteomics data processed by MaxQuant.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4965, doi. 10.1093/bioinformatics/btaa620

By:

Gallant, James Luke;
Heunis, Tiaan;
Sampson, Samantha Leigh;
Bitter, Wilbert

Publication type:

Article

matFR: a MATLAB toolbox for feature ranking.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4968, doi. 10.1093/bioinformatics/btaa621

By:

Zhang, Zhicheng;
Liang, Xiaokun;
Qin, Wenjian;
Yu, Shaode;
Xie, Yaoqin

Publication type:

Article

Genome-wide association studies of brain imaging data via weighted distance correlation.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4942, doi. 10.1093/bioinformatics/btaa612

By:

Wen, Canhong;
Yang, Yuhui;
Xiao, Quan;
Huang, Meiyan;
Pan, Wenliang;
Initiative, for the Alzheimer's Disease Neuroimaging

Publication type:

Article

iPromoter-BnCNN: a novel branched CNN-based predictor for identifying and classifying sigma promoters.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4869, doi. 10.1093/bioinformatics/btaa609

By:

Amin, Ruhul;
Rahman, Chowdhury Rafeed;
Ahmed, Sajid;
Sifat, Md Habibur Rahman;
Liton, Md Nazmul Khan;
Rahman, Md Moshiur;
Khan, Md Zahid Hossain;
Shatabda, Swakkhar

Publication type:

Article

Rapid epistatic mixed-model association studies by controlling multiple polygenic effects.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4833, doi. 10.1093/bioinformatics/btaa610

By:

Wang, Dan;
Tang, Hui;
Liu, Jian-Feng;
Xu, Shizhong;
Zhang, Qin;
Ning, Chao

Publication type:

Article

Using AnABlast for intergenic sORF prediction in the Caenorhabditis elegans genome.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4827, doi. 10.1093/bioinformatics/btaa608

By:

Casimiro-Soriguer, C S;
Rigual, M M;
Brokate-Llanos, A M;
Muñoz, M J;
Garzón, A;
Pérez-Pulido, A J;
Jimenez, J

Publication type:

Article

Simulation, power evaluation and sample size recommendation for single-cell RNA-seq.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4860, doi. 10.1093/bioinformatics/btaa607

By:

Su, Kenong;
Wu, Zhijin;
Wu, Hao

Publication type:

Article

mirPLS: a partial linear structure identifier method for cancer subtyping using microRNAs.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4902, doi. 10.1093/bioinformatics/btaa606

By:

Ruan, Peifeng;
Wang, Shuang;
Liang, Hua

Publication type:

Article

Network analysis of synonymous codon usage.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4876, doi. 10.1093/bioinformatics/btaa603

By:

Newaz, Khalique;
Wright, Gabriel;
Piland, Jacob;
Li, Jun;
Clark, Patricia L;
Emrich, Scott J;
Milenković, Tijana

Publication type:

Article

Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4928, doi. 10.1093/bioinformatics/btaa601

By:

Ding, Hongxu;
Bailey, Andrew D;
Jain, Miten;
Olsen, Hugh;
Paten, Benedict

Publication type:

Article

BnpC: Bayesian non-parametric clustering of single-cell mutation profiles.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4854, doi. 10.1093/bioinformatics/btaa599

By:

Borgsmüller, Nico;
Bonet, Jose;
Marass, Francesco;
Gonzalez-Perez, Abel;
Lopez-Bigas, Nuria;
Beerenwinkel, Niko

Publication type:

Article

Predicting human microbe–drug associations via graph convolutional network with conditional random field.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4918, doi. 10.1093/bioinformatics/btaa598

By:

Long, Yahui;
Wu, Min;
Kwoh, Chee Keong;
Luo, Jiawei;
Li, Xiaoli

Publication type:

Article

DeepAntigen: a novel method for neoantigen prioritization via 3D genome and deep sparse learning.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4894, doi. 10.1093/bioinformatics/btaa596

By:

Shi, Yi;
Guo, Zehua;
Su, Xianbin;
Meng, Luming;
Zhang, Mingxuan;
Sun, Jing;
Wu, Chao;
Zheng, Minhua;
Shang, Xueyin;
Zou, Xin;
Cheng, Wangqiu;
Yu, Yaoliang;
Cai, Yujia;
Zhang, Chaoyi;
Cai, Weidong;
Da, Lin-Tai;
He, Guang;
Han, Ze-Guang

Publication type:

Article

Deep-learning method for data association in particle tracking.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4935, doi. 10.1093/bioinformatics/btaa597

By:

Yao, Yao;
Smal, Ihor;
Grigoriev, Ilya;
Akhmanova, Anna;
Meijering, Erik

Publication type:

Article

Coevolution-based prediction of protein–protein interactions in polyketide biosynthetic assembly lines.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4846, doi. 10.1093/bioinformatics/btaa595

By:

Wang, Yan;
Marrero, Miguel Correa;
Medema, Marnix H;
Dijk, Aalt D J van

Publication type:

Article

DeepEventMine: end-to-end neural nested event extraction from biomedical texts.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4910, doi. 10.1093/bioinformatics/btaa540

By:

Trieu, Hai-Long;
Tran, Thy Thy;
Duong, Khoa N A;
Nguyen, Anh;
Miwa, Makoto;
Ananiadou, Sophia

Publication type:

Article

Overlap detection on long, error-prone sequencing reads via smooth q-gram.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4838, doi. 10.1093/bioinformatics/btaa252

By:

Song, Yan;
Tang, Haixu;
Zhang, Haoyu;
Zhang, Qin

Publication type:

Article

cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4975, doi. 10.1093/bioinformatics/btaa528

By:

Balaur, Irina;
Roy, Ludovic;
Mazein, Alexander;
Karaca, S Gökberk;
Dogrusoz, Ugur;
Barillot, Emmanuel;
Zinovyev, Andrei

Publication type:

Article