Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 18

Results: 23

Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4813, doi. 10.1093/bioinformatics/btaa616

By:

Hasegawa, Takanori;
Hayashi, Shuto;
Shimizu, Eigo;
Mizuno, Shinichi;
Niida, Atsushi;
Yamaguchi, Rui;
Miyano, Satoru;
Nakagawa, Hidewaki;
Imoto, Seiya

Publication type:

Article

Predicting mechanism of action of cellular perturbations with pathway activity signatures.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4781, doi. 10.1093/bioinformatics/btaa590

By:

Ren, Yan;
Sivaganesan, Siva;
Clark, Nicholas A;
Zhang, Lixia;
Biesiada, Jacek;
Niu, Wen;
Plas, David R;
Medvedovic, Mario

Publication type:

Article

PRANC: ML species tree estimation from the ranked gene trees under coalescence.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4819, doi. 10.1093/bioinformatics/btaa605

By:

Kim, Anastasiia;
Degnan, James H

Publication type:

Article

TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4706, doi. 10.1093/bioinformatics/btaa588

By:

Morgan-Lang, Connor;
McLaughlin, Ryan;
Armstrong, Zachary;
Zhang, Grace;
Chan, Kevin;
Hallam, Steven J

Publication type:

Article

Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4817, doi. 10.1093/bioinformatics/btaa611

By:

Sturm, Gregor;
Szabo, Tamas;
Fotakis, Georgios;
Haider, Marlene;
Rieder, Dietmar;
Trajanoski, Zlatko;
Finotello, Francesca

Publication type:

Article

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4822, doi. 10.1093/bioinformatics/btaa615

By:

Comte, Nicolas;
Morel, Benoit;
Hasić, Damir;
Guéguen, Laurent;
Boussau, Bastien;
Daubin, Vincent;
Penel, Simon;
Scornavacca, Celine;
Gouy, Manolo;
Stamatakis, Alexandros;
Tannier, Eric;
Parsons, David P

Publication type:

Article

Epiviz File Server: Query, transform and interactively explore data from indexed genomic files.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4682, doi. 10.1093/bioinformatics/btaa591

By:

Kancherla, Jayaram;
Yang, Yifan;
Chae, Hyeyun;
Bravo, Hector Corrada

Publication type:

Article

GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4810, doi. 10.1093/bioinformatics/btaa604

By:

Meng, Qingxi;
Ochoa, Idoia;
Hernaez, Mikel

Publication type:

Article

RSSALib: a library for stochastic simulation of complex biochemical reactions.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4825, doi. 10.1093/bioinformatics/btaa602

By:

Thanh, Vo Hong

Publication type:

Article

TDAview: an online visualization tool for topological data analysis.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4805, doi. 10.1093/bioinformatics/btaa600

By:

Walsh, Kieran;
Voineagu, Mircea A;
Vafaee, Fatemeh;
Voineagu, Irina

Publication type:

Article

Multiple kernel learning for integrative consensus clustering of omic datasets.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4789, doi. 10.1093/bioinformatics/btaa593

By:

Cabassi, Alessandra;
Kirk, Paul D W

Publication type:

Article

Detecting and correcting misclassified sequences in the large-scale public databases.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4699, doi. 10.1093/bioinformatics/btaa586

By:

Bagheri, Hamid;
Severin, Andrew J;
Rajan, Hridesh

Publication type:

Article

Evaluating individual genome similarity with a topic model.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4757, doi. 10.1093/bioinformatics/btaa583

By:

Juan, Liran;
Wang, Yongtian;
Jiang, Jingyi;
Yang, Qi;
Wang, Guohua;
Wang, Yadong

Publication type:

Article

ProbeRating: a recommender system to infer binding profiles for nucleic acid-binding proteins.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4797, doi. 10.1093/bioinformatics/btaa580

By:

Yang, Shu;
Liu, Xiaoxi;
Ng, Raymond T

Publication type:

Article

Solubility-Weighted Index: fast and accurate prediction of protein solubility.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4691, doi. 10.1093/bioinformatics/btaa578

By:

Bhandari, Bikash K;
Gardner, Paul P;
Lim, Chun Shen

Publication type:

Article

Gene regulation inference from single-cell RNA-seq data with linear differential equations and velocity inference.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4774, doi. 10.1093/bioinformatics/btaa576

By:

Aubin-Frankowski, Pierre-Cyril;
Vert, Jean-Philippe

Publication type:

Article

Prediction of protein-binding residues: dichotomy of sequence-based methods developed using structured complexes versus disordered proteins.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4729, doi. 10.1093/bioinformatics/btaa573

By:

Zhang, Jian;
Ghadermarzi, Sina;
Kurgan, Lukasz

Publication type:

Article

Allowing mutations in maximal matches boosts genome compression performance.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4675, doi. 10.1093/bioinformatics/btaa572

By:

Liu, Yuansheng;
Wong, Limsoon;
Li, Jinyan

Publication type:

Article

PUMA: PANDA Using MicroRNA Associations.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4765, doi. 10.1093/bioinformatics/btaa571

By:

Kuijjer, Marieke L;
Fagny, Maud;
Marin, Alessandro;
Quackenbush, John;
Glass, Kimberly

Publication type:

Article

Phenotype-specific differences in polygenicity and effect size distribution across functional annotation categories revealed by AI-MiXeR.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4749, doi. 10.1093/bioinformatics/btaa568

By:

Shadrin, Alexey A;
Frei, Oleksandr;
Smeland, Olav B;
Bettella, Francesco;
O'Connell, Kevin S;
Gani, Osman;
Bahrami, Shahram;
Uggen, Tea K E;
Djurovic, Srdjan;
Holland, Dominic;
Andreassen, Ole A;
Dale, Anders M

Publication type:

Article

Modeling circRNA expression pattern with integrated sequence and epigenetic features demonstrates the potential involvement of H3K79me2 in circRNA expression.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4739, doi. 10.1093/bioinformatics/btaa567

By:

Chen, Jia-Bin;
Dong, Shan-Shan;
Yao, Shi;
Duan, Yuan-Yuan;
Hu, Wei-Xin;
Chen, Hao;
Wang, Nai-Ning;
Chen, Xiao-Feng;
Hao, Ruo-Han;
Thynn, Hlaing Nwe;
Guo, Ming-Rui;
Zhang, Yu-Jie;
Rong, Yu;
Chen, Yi-Xiao;
Zhou, Fu-Ling;
Guo, Yan;
Yang, Tie-Lin

Publication type:

Article

Fast and accurate prediction of partial charges using Atom-Path-Descriptor-based machine learning.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4721, doi. 10.1093/bioinformatics/btaa566

By:

Wang, Jike;
Cao, Dongsheng;
Tang, Cunchen;
Chen, Xi;
Sun, Huiyong;
Hou, Tingjun

Publication type:

Article

A boosted unbiased molecular dynamics method for predicting ligands binding mechanisms: probing the binding pathway of dasatinib to Src-kinase.

Published in:

Bioinformatics, 2020, v. 36, n. 18, p. 4714, doi. 10.1093/bioinformatics/btaa565

By:

Sohraby, Farzin;
Moghadam, Mostafa Javaheri;
Aliyar, Masoud;
Aryapour, Hassan

Publication type:

Article