Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 16

Results: 27

TiFoSi: an efficient tool for mechanobiology simulations of epithelia.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4525, doi. 10.1093/bioinformatics/btaa592

By:

Canela-Xandri, Oriol;
Anbari, Samira;
Buceta, Javier

Publication type:

Article

DNA Chisel, a versatile sequence optimizer.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4508, doi. 10.1093/bioinformatics/btaa558

By:

Zulkower, Valentin;
Rosser, Susan

Publication type:

Article

Converting networks to predictive logic models from perturbation signalling data with CellNOpt.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4523, doi. 10.1093/bioinformatics/btaa561

By:

Gjerga, Enio;
Trairatphisan, Panuwat;
Gabor, Attila;
Koch, Hermann;
Chevalier, Celine;
Ceccarelli, Franceco;
Dugourd, Aurelien;
Mitsos, Alexander;
Saez-Rodriguez, Julio

Publication type:

Article

TransformerCPI: improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4406, doi. 10.1093/bioinformatics/btaa524

By:

Chen, Lifan;
Tan, Xiaoqin;
Wang, Dingyan;
Zhong, Feisheng;
Liu, Xiaohong;
Yang, Tianbiao;
Luo, Xiaomin;
Chen, Kaixian;
Jiang, Hualiang;
Zheng, Mingyue

Publication type:

Article

Efficient toolkit implementing best practices for principal component analysis of population genetic data.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4449, doi. 10.1093/bioinformatics/btaa520

By:

Privé, Florian;
Luu, Keurcien;
Blum, Michael G B;
McGrath, John J;
Vilhjálmsson, Bjarni J

Publication type:

Article

ccNetViz: a WebGL-based JavaScript library for visualization of large networks.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4527, doi. 10.1093/bioinformatics/btaa559

By:

Saska, Ales;
Tichy, David;
Moore, Robert;
Rasquinha, Achilles;
Akdas, Caner;
Zhao, Xiaodong;
Fabbri, Renato;
Jeličić, Ana;
Grover, Gaurav;
Jotwani, Himanshu;
Shadab, Mohamed;
Helikar, Resa M;
Helikar, Tomáš

Publication type:

Article

HaDeX: an R package and web-server for analysis of data from hydrogen–deuterium exchange mass spectrometry experiments.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4516, doi. 10.1093/bioinformatics/btaa587

By:

Puchała, Weronika;
Burdukiewicz, Michał;
Kistowski, Michał;
Dąbrowska, Katarzyna A;
Badaczewska-Dawid, Aleksandra E;
Cysewski, Dominik;
Dadlez, Michał

Publication type:

Article

Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4513, doi. 10.1093/bioinformatics/btaa579

By:

Kochnev, Yuri;
Hellemann, Erich;
Cassidy, Kevin C;
Durrant, Jacob D

Publication type:

Article

Programmatic access to bacterial regulatory networks with regutools.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4532, doi. 10.1093/bioinformatics/btaa575

By:

Chávez, Joselyn;
Barberena-Jonas, Carmina;
Sotelo-Fonseca, Jesus E;
Alquicira-Hernández, José;
Salgado, Heladia;
Collado-Torres, Leonardo;
Reyes, Alejandro

Publication type:

Article

SOS: online probability estimation and generation of T-and B-cell receptors.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4510, doi. 10.1093/bioinformatics/btaa574

By:

Isacchini, Giulio;
Olivares, Carlos;
Nourmohammad, Armita;
Walczak, Aleksandra M;
Mora, Thierry

Publication type:

Article

Metasubtract: an R‐package to analytically produce leave‐one‐out meta‐analysis GWAS summary statistics.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4521, doi. 10.1093/bioinformatics/btaa570

By:

Nolte, Ilja M

Publication type:

Article

IBDkin: fast estimation of kinship coefficients from identity by descent segments.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4519, doi. 10.1093/bioinformatics/btaa569

By:

Zhou, Ying;
Browning, Sharon R;
Browning, Brian L

Publication type:

Article

Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4383, doi. 10.1093/bioinformatics/btaa548

By:

Wei, Xiaoqiong;
Zhang, Chengxin;
Freddolino, Peter L;
Zhang, Yang

Publication type:

Article

rmRNAseq: differential expression analysis for repeated-measures RNA-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4432, doi. 10.1093/bioinformatics/btaa525

By:

Nguyen, Yet;
Nettleton, Dan

Publication type:

Article

LabxDB: versatile databases for genomic sequencing and lab management.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4530, doi. 10.1093/bioinformatics/btaa557

By:

Vejnar, Charles E;
Giraldez, Antonio J

Publication type:

Article

ENANO: Encoder for NANOpore FASTQ files.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4506, doi. 10.1093/bioinformatics/btaa551

By:

Álvarez, Guillermo Dufort y;
Seroussi, Gadiel;
Smircich, Pablo;
Sotelo, José;
Ochoa, Idoia;
Martín, Álvaro

Publication type:

Article

Feature selection and classification of noisy proteomics mass spectrometry data based on one-bit perturbed compressed sensing.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4423, doi. 10.1093/bioinformatics/btaa516

By:

Xu, Wenbo;
Tian, Yan;
Wang, Siye;
Cui, Yupeng

Publication type:

Article

Parasitologist-level classification of apicomplexan parasites and host cell with deep cycle transfer learning (DCTL).

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4498, doi. 10.1093/bioinformatics/btaa513

By:

Li, Sen;
Yang, Qi;
Jiang, Hao;
Cortés-Vecino, Jesús A;
Zhang, Yang

Publication type:

Article

Revealing new therapeutic opportunities through drug target prediction: a class imbalance-tolerant machine learning approach.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4490, doi. 10.1093/bioinformatics/btaa495

By:

Liang, Siqi;
Yu, Haiyuan

Publication type:

Article

Automated inference of Boolean models from molecular interaction maps using CaSQ.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4473, doi. 10.1093/bioinformatics/btaa484

By:

Aghamiri, Sara Sadat;
Singh, Vidisha;
Naldi, Aurélien;
Helikar, Tomáš;
Soliman, Sylvain;
Niarakis, Anna

Publication type:

Article

DeepLGP: a novel deep learning method for prioritizing lncRNA target genes.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4466, doi. 10.1093/bioinformatics/btaa428

By:

Zhao, Tianyi;
Hu, Yang;
Peng, Jiajie;
Cheng, Liang

Publication type:

Article

scVAE: variational auto-encoders for single-cell gene expression data.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4415, doi. 10.1093/bioinformatics/btaa293

By:

Grønbech, Christopher Heje;
Vording, Maximillian Fornitz;
Timshel, Pascal N;
Sønderby, Casper Kaae;
Pers, Tune H;
Winther, Ole

Publication type:

Article

DTF: Deep Tensor Factorization for predicting anticancer drug synergy.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4483, doi. 10.1093/bioinformatics/btaa287

By:

Sun, Zexuan;
Huang, Shujun;
Jiang, Peiran;
Hu, Pingzhao

Publication type:

Article

Predicting target genes of non-coding regulatory variants with IRT.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4440, doi. 10.1093/bioinformatics/btaa254

By:

Wu, Zhenqin;
Ioannidis, Nilah M;
Zou, James

Publication type:

Article

Portable nanopore analytics: are we there yet?

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4399, doi. 10.1093/bioinformatics/btaa237

By:

Oliva, Marco;
Milicchio, Franco;
King, Kaden;
Benson, Grace;
Boucher, Christina;
Prosperi, Mattia

Publication type:

Article

Multipopulation harmony search algorithm for the detection of high-order SNP interactions.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4389, doi. 10.1093/bioinformatics/btaa215

By:

Tuo, Shouheng;
Liu, Haiyan;
Chen, Hao

Publication type:

Article

Dual-dropout graph convolutional network for predicting synthetic lethality in human cancers.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4458, doi. 10.1093/bioinformatics/btaa211

By:

Cai, Ruichu;
Chen, Xuexin;
Fang, Yuan;
Wu, Min;
Hao, Yuexing

Publication type:

Article