Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 14

Results: 27

Higher-order Markov models for metagenomic sequence classification.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4130, doi. 10.1093/bioinformatics/btaa562

By:

Burks, David J;
Azad, Rajeev K

Publication type:

Article

Unipept CLI 2.0: adding support for visualizations and functional annotations.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4220, doi. 10.1093/bioinformatics/btaa553

By:

Verschaffelt, Pieter;
Thienen, Philippe Van;
Bossche, Tim Van Den;
Jeugt, Felix Van der;
Tender, Caroline De;
Martens, Lennart;
Dawyndt, Peter;
Mesuere, Bart

Publication type:

Article

ProteinFishing: a protein complex generator within the ModelX toolsuite.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4208, doi. 10.1093/bioinformatics/btaa533

By:

Cianferoni, Damiano;
Radusky, Leandro G;
Head, Sarah A;
Serrano, Luis;
Delgado, Javier

Publication type:

Article

Capybara: equivalence ClAss enumeration of coPhylogenY event-BAsed ReconciliAtions.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4197, doi. 10.1093/bioinformatics/btaa498

By:

Wang, Yishu;
Mary, Arnaud;
Sagot, Marie-France;
Sinaimeri, Blerina

Publication type:

Article

Stereo3D: using stereo images to enrich 3D visualization.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4189, doi. 10.1093/bioinformatics/btaa521

By:

Liu, Yang;
Singh, Vinod Kumar;
Zheng, Deyou

Publication type:

Article

ThETA: transcriptome-driven efficacy estimates for gene-based TArget discovery.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4214, doi. 10.1093/bioinformatics/btaa518

By:

Failli, Mario;
Paananen, Jussi;
Fortino, Vittorio

Publication type:

Article

SOMM4mC: a second-order Markov model for DNA N4-methylcytosine site prediction in six species.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4103, doi. 10.1093/bioinformatics/btaa507

By:

Yang, Jiali;
Lang, Kun;
Zhang, Guangle;
Fan, Xiaodan;
Chen, Yuanyuan;
Pian, Cong

Publication type:

Article

BioStructures.jl: read, write and manipulate macromolecular structures in Julia.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4206, doi. 10.1093/bioinformatics/btaa502

By:

Greener, Joe G;
Selvaraj, Joel;
Ward, Ben J

Publication type:

Article

scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4217, doi. 10.1093/bioinformatics/btaa532

By:

Zhang, Yan;
Zhang, Yaru;
Hu, Jun;
Zhang, Ji;
Guo, Fangjie;
Zhou, Meng;
Zhang, Guijun;
Yu, Fulong;
Su, Jianzhong

Publication type:

Article

iBioProVis: interactive visualization and analysis of compound bioactivity space.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4227, doi. 10.1093/bioinformatics/btaa496

By:

Donmez, Ataberk;
Rifaioglu, Ahmet Sureyya;
Acar, Aybar;
Doğan, Tunca;
Cetin-Atalay, Rengul;
Atalay, Volkan

Publication type:

Article

FastTargetPred: a program enabling the fast prediction of putative protein targets for input chemical databases.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4225, doi. 10.1093/bioinformatics/btaa494

By:

Chaput, Ludovic;
Guillaume, Valentin;
Singh, Natesh;
Deprez, Benoit;
Villoutreix, Bruno O

Publication type:

Article

MetaviralSPAdes: assembly of viruses from metagenomic data.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4126, doi. 10.1093/bioinformatics/btaa490

By:

Antipov, Dmitry;
Raiko, Mikhail;
Lapidus, Alla;
Pevzner, Pavel A

Publication type:

Article

ipcoal: an interactive Python package for simulating and analyzing genealogies and sequences on a species tree or network.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4193, doi. 10.1093/bioinformatics/btaa486

By:

McKenzie, Patrick F;
Eaton, Deren A R

Publication type:

Article

PLIDflow: an open-source workflow for the online analysis of protein–ligand docking using galaxy.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4203, doi. 10.1093/bioinformatics/btaa481

By:

Ulzurrun, Eugenia;
Duarte, Yorley;
Perez-Wohlfeil, Esteban;
Gonzalez-Nilo, Fernando;
Trelles, Oswaldo

Publication type:

Article

EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4200, doi. 10.1093/bioinformatics/btaa480

By:

Pires, Douglas E V;
Veloso, Wandré N P;
Myung, YooChan;
Rodrigues, Carlos H M;
Silk, Michael;
Rezende, Pâmela M;
Silva, Francislon;
Xavier, Joicymara S;
Velloso, João P L;
Silveira, Carlos H da;
Ascher, David B

Publication type:

Article

GDASC: a GPU parallel-based web server for detecting hidden batch factors.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4211, doi. 10.1093/bioinformatics/btaa427

By:

Wang, Xiao;
Yi, Haidong;
Wang, Jia;
Liu, Zhandong;
Yin, Yanbin;
Zhang, Han

Publication type:

Article

Deshrinking ridge regression for genome-wide association studies.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4154, doi. 10.1093/bioinformatics/btaa345

By:

Wang, Meiyue;
Li, Ruidong;
Xu, Shizhong

Publication type:

Article

DeepNano-blitz: a fast base caller for MinION nanopore sequencers.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4191, doi. 10.1093/bioinformatics/btaa297

By:

Boža, Vladimír;
Perešíni, Peter;
Brejová, Broňa;
Vinař, Tomáš

Publication type:

Article

HiGwas: how to compute longitudinal GWAS data in population designs.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4222, doi. 10.1093/bioinformatics/btaa294

By:

Wang, Zhong;
Wang, Nating;
Wang, Zilu;
Jiang, Libo;
Wang, Yaqun;
Li, Jiahan;
Wu, Rongling

Publication type:

Article

pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4171, doi. 10.1093/bioinformatics/btaa289

By:

Simopoulos, Caitlin M A;
Ning, Zhibin;
Zhang, Xu;
Li, Leyuan;
Walker, Krystal;
Lavallée-Adam, Mathieu;
Figeys, Daniel

Publication type:

Article

HPOLabeler: improving prediction of human protein–phenotype associations by learning to rank.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4180, doi. 10.1093/bioinformatics/btaa284

By:

Liu, Lizhi;
Huang, Xiaodi;
Mamitsuka, Hiroshi;
Zhu, Shanfeng

Publication type:

Article

CiteFuse enables multi-modal analysis of CITE-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4137, doi. 10.1093/bioinformatics/btaa282

By:

Kim, Hani Jieun;
Lin, Yingxin;
Geddes, Thomas A;
Yang, Jean Yee Hwa;
Yang, Pengyi

Publication type:

Article

Optimization of co-evolution analysis through phylogenetic profiling reveals pathway-specific signals.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4116, doi. 10.1093/bioinformatics/btaa281

By:

Bloch, Idit;
Sherill-Rofe, Dana;
Stupp, Doron;
Unterman, Irene;
Beer, Hodaya;
Sharon, Elad;
Tabach, Yuval

Publication type:

Article

Boosting the extraction of elementary flux modes in genome-scale metabolic networks using the linear programming approach.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4163, doi. 10.1093/bioinformatics/btaa280

By:

Guil, Francisco;
Hidalgo, José F;
García, José M

Publication type:

Article

An in silico model of LINE-1-mediated neoplastic evolution.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4144, doi. 10.1093/bioinformatics/btaa279

By:

LeBien, Jack;
McCollam, Gerald;
Atallah, Joel

Publication type:

Article

RNAIndel: discovering somatic coding indels from tumor RNA-Seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4231, doi. 10.1093/bioinformatics/btaa247

By:

Hagiwara, Kohei;
Ding, Liang;
Edmonson, Michael N;
Rice, Stephen V;
Newman, Scott;
Easton, John;
Dai, Juncheng;
Meshinchi, Soheil;
Ries, Rhonda E;
Rusch, Michael;
Zhang, Jinghui

Publication type:

Article

Testing hypotheses about the microbiome using the linear decomposition model (LDM).

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4106, doi. 10.1093/bioinformatics/btaa260

By:

Hu, Yi-Juan;
Satten, Glen A

Publication type:

Article