Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 12
Results: 63
alona: a web server for single-cell RNA-seq analysis.
- Published in:
- Bioinformatics, 2020, v. 36, n. 12, p. 3910, doi. 10.1093/bioinformatics/btaa269
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GREMA: modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3833, doi. 10.1093/bioinformatics/btaa267
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APAlyzer: a bioinformatics package for analysis of alternative polyadenylation isoforms.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3907, doi. 10.1093/bioinformatics/btaa266
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Vargas: heuristic-free alignment for assessing linear and graph read aligners.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3712, doi. 10.1093/bioinformatics/btaa265
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scHLAcount: allele-specific HLA expression from single-cell gene expression data.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3905, doi. 10.1093/bioinformatics/btaa264
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yacrd and fpa: upstream tools for long-read genome assembly.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3894, doi. 10.1093/bioinformatics/btaa262
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ShallowHRD: detection of homologous recombination deficiency from shallow whole genome sequencing.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3888, doi. 10.1093/bioinformatics/btaa261
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HotSpot3D web server: an integrated resource for mutation analysis in protein 3D structures.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3944, doi. 10.1093/bioinformatics/btaa258
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Sequoya: multiobjective multiple sequence alignment in Python.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3892, doi. 10.1093/bioinformatics/btaa257
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Advancing PICO element detection in biomedical text via deep neural networks.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3856, doi. 10.1093/bioinformatics/btaa256
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ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3885, doi. 10.1093/bioinformatics/btaa253
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MIAMI––a tool for non-targeted detection of metabolic flux changes for mode of action identification.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3925, doi. 10.1093/bioinformatics/btaa251
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- Article
Phigaro: high-throughput prophage sequence annotation.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3882, doi. 10.1093/bioinformatics/btaa250
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Serpentine: a flexible 2D binning method for differential Hi-C analysis.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3645, doi. 10.1093/bioinformatics/btaa249
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- Article
SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3879, doi. 10.1093/bioinformatics/btaa246
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- Article
TranspoScope: interactive visualization of retrotransposon insertions.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3877, doi. 10.1093/bioinformatics/btaa244
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Pooled variable scaling for cluster analysis.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3849, doi. 10.1093/bioinformatics/btaa243
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- Article
CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3637, doi. 10.1093/bioinformatics/btaa242
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CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3922, doi. 10.1093/bioinformatics/btaa241
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- Article
EnrichrBot: Twitter bot tracking tweets about human genes.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3932, doi. 10.1093/bioinformatics/btaa240
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- Article
Blood-based multi-tissue gene expression inference with Bayesian ridge regression.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3788, doi. 10.1093/bioinformatics/btaa239
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GlyGen data model and processing workflow.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3941, doi. 10.1093/bioinformatics/btaa238
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MONET: a toolbox integrating top-performing methods for network modularization.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3920, doi. 10.1093/bioinformatics/btaa236
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MODifieR: an Ensemble R Package for Inference of Disease Modules from Transcriptomics Networks.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3918, doi. 10.1093/bioinformatics/btaa235
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- Article
FASPR: an open-source tool for fast and accurate protein side-chain packing.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3758, doi. 10.1093/bioinformatics/btaa234
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gplas: a comprehensive tool for plasmid analysis using short-read graphs.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3874, doi. 10.1093/bioinformatics/btaa233
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CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3703, doi. 10.1093/bioinformatics/btaa232
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Joint learning dimension reduction and clustering of single-cell RNA-sequencing data.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3825, doi. 10.1093/bioinformatics/btaa231
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Learning transferable deep convolutional neural networks for the classification of bacterial virulence factors.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3693, doi. 10.1093/bioinformatics/btaa230
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Prioritizing genetic variants in GWAS with lasso using permutation-assisted tuning.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3811, doi. 10.1093/bioinformatics/btaa229
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MaveQuest: a web resource for planning experimental tests of human variant effects.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3938, doi. 10.1093/bioinformatics/btaa228
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T-Gene: improved target gene prediction.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3902, doi. 10.1093/bioinformatics/btaa227
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ADFinder: accurate detection of programmed DNA elimination using NGS high-throughput sequencing data.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3632, doi. 10.1093/bioinformatics/btaa226
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EVICAN—a balanced dataset for algorithm development in cell and nucleus segmentation.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3863, doi. 10.1093/bioinformatics/btaa225
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corto: a lightweight R package for gene network inference and master regulator analysis.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3916, doi. 10.1093/bioinformatics/btaa223
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GenMap: ultra-fast computation of genome mappability.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3687, doi. 10.1093/bioinformatics/btaa222
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TwisTranscripT: stochastic simulation of the transcription-supercoiling coupling.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3899, doi. 10.1093/bioinformatics/btaa221
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Plant 3D (P3D): a plant phenotyping toolkit for 3D point clouds.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3949, doi. 10.1093/bioinformatics/btaa220
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ScaffoldGraph: an open-source library for the generation and analysis of molecular scaffold networks and scaffold trees.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3930, doi. 10.1093/bioinformatics/btaa219
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PolishEM: image enhancement in FIB–SEM.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3947, doi. 10.1093/bioinformatics/btaa218
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FUpred: detecting protein domains through deep-learning-based contact map prediction.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3749, doi. 10.1093/bioinformatics/btaa217
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- Article
A parallelized strategy for epistasis analysis based on Empirical Bayesian Elastic Net models.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3803, doi. 10.1093/bioinformatics/btaa216
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Gcluster: a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3871, doi. 10.1093/bioinformatics/btaa212
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QuartataWeb: Integrated Chemical–Protein-Pathway Mapping for Polypharmacology and Chemogenomics.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3935, doi. 10.1093/bioinformatics/btaa210
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annonex2embl: automatic preparation of annotated DNA sequences for bulk submissions to ENA.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3841, doi. 10.1093/bioinformatics/btaa209
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CNV-BAC: Copy number Variation Detection in Bacterial Circular Genome.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3890, doi. 10.1093/bioinformatics/btaa208
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A knowledge-based scoring function to assess quaternary associations of proteins.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3739, doi. 10.1093/bioinformatics/btaa207
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Annotation of tandem mass spectrometry data using stochastic neural networks in shotgun proteomics.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3781, doi. 10.1093/bioinformatics/btaa206
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debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3927, doi. 10.1093/bioinformatics/btaa205
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Brewery: deep learning and deeper profiles for the prediction of 1D protein structure annotations.
- Published in:
- Bioinformatics, 2020, v. 36, n. 12, p. 3897, doi. 10.1093/bioinformatics/btaa204
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- Article