Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 11

Results: 52

Potential covalent drugs targeting the main protease of the SARS-CoV-2 coronavirus.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3295, doi. 10.1093/bioinformatics/btaa224

By:

Liu, Sen;
Zheng, Qiang;
Wang, Zhiying

Publication type:

Article

powmic: an R package for power assessment in microbiome case–control studies.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3563, doi. 10.1093/bioinformatics/btaa197

By:

Chen, Li

Publication type:

Article

TCRBuilder: multi-state T-cell receptor structure prediction.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3580, doi. 10.1093/bioinformatics/btaa194

By:

Wong, Wing Ki;
Marks, Claire;
Leem, Jinwoo;
Lewis, Alan P;
Shi, Jiye;
Deane, Charlotte M

Publication type:

Article

CRiSP: accurate structure prediction of disulfide-rich peptides with cystine-specific sequence alignment and machine learning.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3385, doi. 10.1093/bioinformatics/btaa193

By:

Liu, Zi-Lin;
Hu, Jing-Hao;
Jiang, Fan;
Wu, Yun-Dong

Publication type:

Article

LogoJS: a Javascript package for creating sequence logos and embedding them in web applications.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3573, doi. 10.1093/bioinformatics/btaa192

By:

Pratt, Henry;
Weng, Zhiping

Publication type:

Article

A blind and independent benchmark study for detecting differeally methylated regions in plants.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3314, doi. 10.1093/bioinformatics/btaa191

By:

Kreutz, Clemens;
Can, Nilay S;
Bruening, Ralf Schulze;
Meyberg, Rabea;
Mérai, Zsuzsanna;
Fernandez-Pozo, Noe;
Rensing, Stefan A

Publication type:

Article

GlycoGlyph: a glycan visualizing, drawing and naming application.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3613, doi. 10.1093/bioinformatics/btaa190

By:

Mehta, Akul Y;
Cummings, Richard D

Publication type:

Article

Projected t-SNE for batch correction.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3522, doi. 10.1093/bioinformatics/btaa189

By:

Aliverti, Emanuele;
Tilson, Jeffrey L;
Filer, Dayne L;
Babcock, Benjamin;
Colaneri, Alejandro;
Ocasio, Jennifer;
Gershon, Timothy R;
Wilhelmsen, Kirk C;
Dunson, David B

Publication type:

Article

VISAR: an interactive tool for dissecting chemical features learned by deep neural network QSAR models.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3610, doi. 10.1093/bioinformatics/btaa187

By:

Ding, Qingyang;
Hou, Siyu;
Zu, Songpeng;
Zhang, Yonghui;
Li, Shao

Publication type:

Article

COMER2: GPU-accelerated sensitive and specific homology searches.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3570, doi. 10.1093/bioinformatics/btaa185

By:

Margelevičius, Mindaugas

Publication type:

Article

projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3592, doi. 10.1093/bioinformatics/btaa183

By:

Sharma, Gaurav;
Colantuoni, Carlo;
Goff, Loyal A;
Fertig, Elana J;
Stein-O'Brien, Genevieve

Publication type:

Article

tugHall: a simulator of cancer-cell evolution based on the hallmarks of cancer and tumor-related genes.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3597, doi. 10.1093/bioinformatics/btaa182

By:

Nagornov, Iurii S;
Kato, Mamoru

Publication type:

Article

GraphBin: refined binning of metagenomic contigs using assembly graphs.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3307, doi. 10.1093/bioinformatics/btaa180

By:

Mallawaarachchi, Vijini;
Wickramarachchi, Anuradha;
Lin, Yu

Publication type:

Article

m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m<sup>7</sup>G) sites in human.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3528, doi. 10.1093/bioinformatics/btaa178

By:

Song, Bowen;
Tang, Yujiao;
Chen, Kunqi;
Wei, Zhen;
Rong, Rong;
Lu, Zhiliang;
Su, Jionglong;
Magalhães, João Pedro de;
Rigden, Daniel J;
Meng, Jia

Publication type:

Article

Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3365, doi. 10.1093/bioinformatics/btaa177

By:

Xue, Yaxin;
Lanzén, Anders;
Jonassen, Inge

Publication type:

Article

IgGeneUsage: differential gene usage in immune repertoires.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3590, doi. 10.1093/bioinformatics/btaa174

By:

Kitanovski, Simo;
Hoffmann, Daniel

Publication type:

Article

primirTSS: an R package for identifying cell-specific microRNA transcription start sites.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3605, doi. 10.1093/bioinformatics/btaa173

By:

Li, Pumin;
Xu, Qi;
Hua, Xu;
Xie, Zhongwei;
Li, Jie;
Wang, Jin

Publication type:

Article

RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3299, doi. 10.1093/bioinformatics/btaa172

By:

Chen, Ziwei;
Gong, Fuzhou;
Wan, Lin;
Ma, Liang

Publication type:

Article

Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3561, doi. 10.1093/bioinformatics/btaa171

By:

Sun, Kun

Publication type:

Article

The Glycine Receptor Allosteric Ligands Library (GRALL).

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3379, doi. 10.1093/bioinformatics/btaa170

By:

Cerdan, Adrien H;
Sisquellas, Marion;
Pereira, Gilberto;
Gomes, Diego E Barreto;
Changeux, Jean-Pierre;
Cecchini, Marco

Publication type:

Article

grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3607, doi. 10.1093/bioinformatics/btaa167

By:

Taylor, Louis J;
Abbas, Arwa;
Bushman, Frederic D

Publication type:

Article

iATC-FRAKEL: a simple multi-label web server for recognizing anatomical therapeutic chemical classes of drugs with their fingerprints only.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3568, doi. 10.1093/bioinformatics/btaa166

By:

Zhou, Jian-Peng;
Chen, Lei;
Wang, Tianyun;
Liu, Min

Publication type:

Article

CPS analysis: self-contained validation of biomedical data clustering.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3516, doi. 10.1093/bioinformatics/btaa165

By:

Zhang, Lixiang;
Lin, Lin;
Li, Jia

Publication type:

Article

forgeNet: a graph deep neural network model using tree-based ensemble classifiers for feature graph construction.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3507, doi. 10.1093/bioinformatics/btaa164

By:

Kong, Yunchuan;
Yu, Tianwei

Publication type:

Article

DeCoDe: degenerate codon design for complete protein-coding DNA libraries.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3357, doi. 10.1093/bioinformatics/btaa162

By:

Shimko, Tyler C;
Fordyce, Polly M;
Orenstein, Yaron

Publication type:

Article

HLPpred-Fuse: improved and robust prediction of hemolytic peptide and its activity by fusing multiple feature representation.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3350, doi. 10.1093/bioinformatics/btaa160

By:

Hasan, Md Mehedi;
Schaduangrat, Nalini;
Basith, Shaherin;
Lee, Gwang;
Shoombuatong, Watshara;
Manavalan, Balachandran

Publication type:

Article

SphereCon—a method for precise estimation of residue relative solvent accessible area from limited structural information.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3372, doi. 10.1093/bioinformatics/btaa159

By:

Gress, Alexander;
Kalinina, Olga V

Publication type:

Article

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3594, doi. 10.1093/bioinformatics/btaa158

By:

Weber, Cédric R;
Akbar, Rahmad;
Yermanos, Alexander;
Pavlović, Milena;
Snapkov, Igor;
Sandve, Geir K;
Reddy, Sai T;
Greiff, Victor

Publication type:

Article

SCLpred-EMS: subcellular localization prediction of endomembrane system and secretory pathway proteins by Deep N-to-1 Convolutional Neural Networks.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3343, doi. 10.1093/bioinformatics/btaa156

By:

Kaleel, Manaz;
Zheng, Yandan;
Chen, Jialiang;
Feng, Xuanming;
Simpson, Jeremy C;
Pollastri, Gianluca;
Mooney, Catherine

Publication type:

Article

iMRM: a platform for simultaneously identifying multiple kinds of RNA modifications.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3336, doi. 10.1093/bioinformatics/btaa155

By:

Liu, Kewei;
Chen, Wei

Publication type:

Article

nanoTRON: a Picasso module for MLP-based classification of super-resolution data.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3620, doi. 10.1093/bioinformatics/btaa154

By:

Auer, Alexander;
Strauss, Maximilian T;
Strauss, Sebastian;
Jungmann, Ralf

Publication type:

Article

MIXnorm: normalizing RNA-seq data from formalin-fixed paraffin-embedded samples.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3401, doi. 10.1093/bioinformatics/btaa153

By:

Yin, Shen;
Wang, Xinlei;
Jia, Gaoxiang;
Xie, Yang

Publication type:

Article

CloudASM: an ultra-efficient cloud-based pipeline for mapping allele-specific DNA methylation.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3558, doi. 10.1093/bioinformatics/btaa149

By:

Dumont, Emmanuel L P;
Tycko, Benjamin;
Do, Catherine

Publication type:

Article

2DImpute: imputation in single-cell RNA-seq data from correlations in two dimensions.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3588, doi. 10.1093/bioinformatics/btaa148

By:

Zhu, Kaiyi;
Anastassiou, Dimitris

Publication type:

Article

ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3578, doi. 10.1093/bioinformatics/btaa147

By:

Quadrini, Michela;
Tesei, Luca;
Merelli, Emanuela

Publication type:

Article

CRAMER: a lightweight, highly customizable web-based genome browser supporting multiple visualization instances.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3556, doi. 10.1093/bioinformatics/btaa146

By:

Anastasiadi, M;
Bragin, E;
Biojoux, P;
Ahamed, A;
Burgin, J;
Cogle, K de Castro;
Llaneza-Lago, S;
Muvunyi, R;
Scislak, M;
Aktan, I;
Molitor, C;
Kurowski, T;
Mohareb, F

Publication type:

Article

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3552, doi. 10.1093/bioinformatics/btaa145

By:

Cleemput, Sara;
Dumon, Wim;
Fonseca, Vagner;
Karim, Wasim Abdool;
Giovanetti, Marta;
Alcantara, Luiz Carlos;
Deforche, Koen;
Oliveira, Tulio de

Publication type:

Article

Feature set optimization in biomarker discovery from genome-scale data.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3393, doi. 10.1093/bioinformatics/btaa144

By:

Fortino, V;
Scala, G;
Greco, D

Publication type:

Article

DNA4mC-LIP: a linear integration method to identify N4-methylcytosine site in multiple species.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3327, doi. 10.1093/bioinformatics/btaa143

By:

Tang, Qiang;
Kang, Juanjuan;
Yuan, Jiaqing;
Tang, Hua;
Li, Xianhai;
Lin, Hao;
Huang, Jian;
Chen, Wei

Publication type:

Article

rMSIproc: an R package for mass spectrometry imaging data processing.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3618, doi. 10.1093/bioinformatics/btaa142

By:

Ràfols, Pere;
Heijs, Bram;
Castillo, Esteban del;
Yanes, Oscar;
McDonnell, Liam A;
Brezmes, Jesús;
Pérez-Taboada, Iara;
Vallejo, Mario;
García-Altares, María;
Correig, Xavier

Publication type:

Article

ProCaff: protein–carbohydrate complex binding affinity database.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3615, doi. 10.1093/bioinformatics/btaa141

By:

Shanmugam, N R Siva;
Blessy, J Jino;
Veluraja, K;
Gromiha, M Michael

Publication type:

Article

MESA: automated assessment of synthetic DNA fragments and simulation of DNA synthesis, storage, sequencing and PCR errors.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3322, doi. 10.1093/bioinformatics/btaa140

By:

Schwarz, Michael;
Welzel, Marius;
Kabdullayeva, Tolganay;
Becker, Anke;
Freisleben, Bernd;
Heider, Dominik

Publication type:

Article

Breeze: an integrated quality control and data analysis application for high-throughput drug screening.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3602, doi. 10.1093/bioinformatics/btaa138

By:

Potdar, Swapnil;
Ianevski, Aleksandr;
Mpindi, John-Patrick;
Bychkov, Dmitrii;
Fiere, Clément;
Ianevski, Philipp;
Yadav, Bhagwan;
Wennerberg, Krister;
Aittokallio, Tero;
Kallioniemi, Olli;
Saarela, Jani;
Östling, Päivi

Publication type:

Article

Ensemble learning for classifying single-cell data and projection across reference atlases.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3585, doi. 10.1093/bioinformatics/btaa137

By:

Wang, Lin;
Catalan, Francisca;
Shamardani, Karin;
Babikir, Husam;
Diaz, Aaron

Publication type:

Article

Bio2Rxn: sequence-based enzymatic reaction predictions by a consensus strategy.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3600, doi. 10.1093/bioinformatics/btaa135

By:

Zhang, Tong;
Tian, Yu;
Yuan, Le;
Chen, Fu;
Ren, Ailin;
Hu, Qian-Nan

Publication type:

Article

Leitmotif: protein motif scanning 2.0.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3566, doi. 10.1093/bioinformatics/btaa133

By:

Biđin, Siniša;
Vujaklija, Ivan;
Paradžik, Tina;
Bielen, Ana;
Vujaklija, Dušica

Publication type:

Article

ConfID: an analytical method for conformational characterization of small molecules using molecular dynamics trajectories.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3576, doi. 10.1093/bioinformatics/btaa130

By:

Polêto, Marcelo D;
Grisci, Bruno I;
Dorn, Marcio;
Verli, Hugo

Publication type:

Article

V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3582, doi. 10.1093/bioinformatics/btaa128

By:

Lawlor, Nathan;
Marquez, Eladio J;
Lee, Donghyung;
Ucar, Duygu

Publication type:

Article

Discovering and interpreting transcriptomic drivers of imaging traits using neural networks.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3537, doi. 10.1093/bioinformatics/btaa126

By:

Smedley, Nova F;
El-Saden, Suzie;
Hsu, William

Publication type:

Article

dv-trio: a family-based variant calling pipeline using DeepVariant.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3549, doi. 10.1093/bioinformatics/btaa116

By:

Ip, Eddie K K;
Hadinata, Clinton;
Ho, Joshua W K;
Giannoulatou, Eleni

Publication type:

Article