Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 1

Results: 41

QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 90, doi. 10.1093/bioinformatics/btz552

By:

Sievers, Fabian;
Higgins, Desmond G

Publication type:

Article

DeePaC: predicting pathogenic potential of novel DNA with reverse-complement neural networks.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 81, doi. 10.1093/bioinformatics/btz541

By:

Bartoszewicz, Jakub M;
Seidel, Anja;
Rentzsch, Robert;
Renard, Bernhard Y

Publication type:

Article

Cooler: scalable storage for Hi-C data and other genomically labeled arrays.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 311, doi. 10.1093/bioinformatics/btz540

By:

Abdennur, Nezar;
Mirny, Leonid A

Publication type:

Article

Towards accurate high-throughput ligand affinity prediction by exploiting structural ensembles, docking metrics and ligand similarity.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 160, doi. 10.1093/bioinformatics/btz538

By:

Schneider, Melanie;
Pons, Jean-Luc;
Bourguet, William;
Labesse, Gilles

Publication type:

Article

circDeep: deep learning approach for circular RNA classification from other long non-coding RNA.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 73, doi. 10.1093/bioinformatics/btz537

By:

Chaabane, Mohamed;
Williams, Robert M;
Stephens, Austin T;
Park, Juw Won

Publication type:

Article

Isoform function prediction based on bi-random walks on a heterogeneous network.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 303, doi. 10.1093/bioinformatics/btz535

By:

Yu, Guoxian;
Wang, Keyao;
Domeniconi, Carlotta;
Guo, Maozu;
Wang, Jun

Publication type:

Article

Simultaneous prediction of multiple outcomes using revised stacking algorithms.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 65, doi. 10.1093/bioinformatics/btz531

By:

Xing, Li;
Lesperance, Mary L;
Zhang, Xuekui

Publication type:

Article

MiTPeptideDB: a proteogenomic resource for the discovery of novel peptides.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 205, doi. 10.1093/bioinformatics/btz530

By:

Guruceaga, Elizabeth;
Garin-Muga, Alba;
Segura, Victor

Publication type:

Article

Inference of differential gene regulatory networks based on gene expression and genetic perturbation data.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 197, doi. 10.1093/bioinformatics/btz529

By:

Zhou, Xin;
Cai, Xiaodong

Publication type:

Article

MaNGA: a novel multi-niche multi-objective genetic algorithm for QSAR modelling.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 145, doi. 10.1093/bioinformatics/btz521

By:

Serra, Angela;
Önlü, Serli;
Festa, Paola;
Fortino, Vittorio;
Greco, Dario

Publication type:

Article

sefOri: selecting the best-engineered sequence features to predict DNA replication origins.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 49, doi. 10.1093/bioinformatics/btz506

By:

Lou, Chenwei;
Zhao, Jian;
Shi, Ruoyao;
Wang, Qian;
Zhou, Wenyang;
Wang, Yubo;
Wang, Guoqing;
Huang, Lan;
Feng, Xin;
Zhou, Fengfeng

Publication type:

Article

Deep representation learning for domain adaptable classification of infrared spectral imaging data.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 287, doi. 10.1093/bioinformatics/btz505

By:

Raulf, Arne P;
Butke, Joshua;
Küpper, Claus;
Großerueschkamp, Frederik;
Gerwert, Klaus;
Mosig, Axel

Publication type:

Article

HUNER: improving biomedical NER with pretraining.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 295, doi. 10.1093/bioinformatics/btz528

By:

Weber, Leon;
Münchmeyer, Jannes;
Rocktäschel, Tim;
Habibi, Maryam;
Leser, Ulf

Publication type:

Article

A helical lock and key model of polyproline II conformation with SH3.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 154, doi. 10.1093/bioinformatics/btz527

By:

Meirson, Tomer;
Bomze, David;
Kahlon, Liron;
Gil-Henn, Hava;
Samson, Abraham O

Publication type:

Article

iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 131, doi. 10.1093/bioinformatics/btz502

By:

Wang, Jiyao;
Youkharibache, Philippe;
Zhang, Dachuan;
Lanczycki, Christopher J;
Geer, Renata C;
Madej, Thomas;
Phan, Lon;
Ward, Minghong;
Lu, Shennan;
Marchler, Gabriele H;
Wang, Yanli;
Bryant, Stephen H;
Geer, Lewis Y;
Marchler-Bauer, Aron

Publication type:

Article

Towards reliable named entity recognition in the biomedical domain.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 280, doi. 10.1093/bioinformatics/btz504

By:

Giorgi, John M;
Bader, Gary D

Publication type:

Article

MRLR: unraveling high-resolution meiotic recombination by linked reads.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 10, doi. 10.1093/bioinformatics/btz503

By:

Xu, Peng;
Kennell, Timothy;
Gao, Min;
Consortium, Human Genome Structural Variation;
Kimberly, Robert P;
Chong, Zechen

Publication type:

Article

Bayesian GWAS with Structured and Non-Local Priors.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 17, doi. 10.1093/bioinformatics/btz518

By:

Kaplan, Adam;
Lock, Eric F;
Fiecas, Mark;
Initiative, for the Alzheimer's Disease Neuroimaging

Publication type:

Article

Increasing the efficiency and accuracy of the ABACUS protein sequence design method.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 136, doi. 10.1093/bioinformatics/btz515

By:

Xiong, Peng;
Hu, Xiuhong;
Huang, Bin;
Zhang, Jiahai;
Chen, Quan;
Liu, Haiyan

Publication type:

Article

Genetic cooperativity in multi-layer networks implicates cell survival and senescence in the striatum of Huntington's disease mice synchronous to symptoms.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 186, doi. 10.1093/bioinformatics/btz514

By:

Bigan, Erwan;
Nair, Satish Sasidharan;
Lejeune, François-Xavier;
Fragnaud, Hélissande;
Parmentier, Frédéric;
Mégret, Lucile;
Verny, Marc;
Aaronson, Jeff;
Rosinski, Jim;
Neri, Christian

Publication type:

Article

Modelling cancer progression using Mutual Hazard Networks.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 241, doi. 10.1093/bioinformatics/btz513

By:

Schill, Rudolf;
Solbrig, Stefan;
Wettig, Tilo;
Spang, Rainer

Publication type:

Article

DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 56, doi. 10.1093/bioinformatics/btz512

By:

Savojardo, Castrense;
Bruciaferri, Niccolò;
Tartari, Giacomo;
Martelli, Pier Luigi;
Casadio, Rita

Publication type:

Article

Scaling tree-based automated machine learning to biomedical big data with a feature set selector.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 250, doi. 10.1093/bioinformatics/btz470

By:

Le, Trang T;
Fu, Weixuan;
Moore, Jason H

Publication type:

Article

A dynamic programing approach to integrate gene expression data and network information for pathway model generation.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 169, doi. 10.1093/bioinformatics/btz467

By:

Jiang, Yuexu;
Liang, Yanchun;
Wang, Duolin;
Xu, Dong;
Joshi, Trupti

Publication type:

Article

iScore: a novel graph kernel-based function for scoring protein–protein docking models.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 112, doi. 10.1093/bioinformatics/btz496

By:

Geng, Cunliang;
Jung, Yong;
Renaud, Nicolas;
Honavar, Vasant;
Bonvin, Alexandre M J J;
Xue, Li C

Publication type:

Article

Positive multistate protein design.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 122, doi. 10.1093/bioinformatics/btz497

By:

Vucinic, Jelena;
Simoncini, David;
Ruffini, Manon;
Barbe, Sophie;
Schiex, Thomas

Publication type:

Article

Estimation of population genetic parameters using an EM algorithm and sequence data from experimental evolution populations.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 221, doi. 10.1093/bioinformatics/btz498

By:

Kojima, Yasuhiro;
Matsumoto, Hirotaka;
Kiryu, Hisanori

Publication type:

Article

Reversible jump MCMC for multi-model inference in Metabolic Flux Analysis.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 232, doi. 10.1093/bioinformatics/btz500

By:

Theorell, Axel;
Nöh, Katharina

Publication type:

Article

Deep learning on chaos game representation for proteins.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 272, doi. 10.1093/bioinformatics/btz493

By:

Löchel, Hannah F;
Eger, Dominic;
Sperlea, Theodor;
Heider, Dominik

Publication type:

Article

CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 264, doi. 10.1093/bioinformatics/btz490

By:

Junge, Alexander;
Jensen, Lars Juhl

Publication type:

Article

A sequential algorithm to detect diffusion switching along intracellular particle trajectories.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 317, doi. 10.1093/bioinformatics/btz489

By:

Briane, Vincent;
Vimond, Myriam;
Valades-Cruz, Cesar Augusto;
Salomon, Antoine;
Wunder, Christian;
Kervrann, Charles

Publication type:

Article

GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 257, doi. 10.1093/bioinformatics/btz488

By:

Li, Qian;
Fisher, Kate;
Meng, Wenjun;
Fang, Bin;
Welsh, Eric;
Haura, Eric B;
Koomen, John M;
Eschrich, Steven A;
Fridley, Brooke L;
Chen, Y Ann

Publication type:

Article

Sequence alignment using machine learning for accurate template-based protein structure prediction.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 104, doi. 10.1093/bioinformatics/btz483

By:

Makigaki, Shuichiro;
Ishida, Takashi

Publication type:

Article

P3DOCK: a protein–RNA docking webserver based on template-based and template-free docking.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 96, doi. 10.1093/bioinformatics/btz478

By:

Zheng, Jinfang;
Hong, Xu;
Xie, Juan;
Tong, Xiaoxue;
Liu, Shiyong

Publication type:

Article

Protein contact prediction using metagenome sequence data and residual neural networks.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 41, doi. 10.1093/bioinformatics/btz477

By:

Wu, Qi;
Peng, Zhenling;
Anishchenko, Ivan;
Cong, Qian;
Baker, David;
Yang, Jianyi

Publication type:

Article

Mycorrhiza: genotype assignment using phylogenetic networks.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 212, doi. 10.1093/bioinformatics/btz476

By:

Georges-Filteau, Jeremy;
Hamelin, Richard C;
Blanchette, Mathieu

Publication type:

Article

arcasHLA: high-resolution HLA typing from RNAseq.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 33, doi. 10.1093/bioinformatics/btz474

By:

Orenbuch, Rose;
Filip, Ioan;
Comito, Devon;
Shaman, Jeffrey;
Pe'er, Itsik;
Rabadan, Raul

Publication type:

Article

DepthFinder: a tool to determine the optimal read depth for reduced-representation sequencing.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 26, doi. 10.1093/bioinformatics/btz473

By:

Torkamaneh, Davoud;
Laroche, Jérôme;
Boyle, Brian;
Belzile, François

Publication type:

Article

Adaptive boosting-based computational model for predicting potential miRNA-disease associations.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 330, doi. 10.1093/bioinformatics/btz475

By:

Zhao, Yan;
Chen, Xing;
Yin, Jun

Publication type:

Article

Cloud bursting galaxy: federated identity and access management.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 1, doi. 10.1093/bioinformatics/btz472

By:

Jalili, Vahid;
Afgan, Enis;
Taylor, James;
Goecks, Jeremy

Publication type:

Article

An empirical Bayesian ranking method, with applications to high throughput biology.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 177, doi. 10.1093/bioinformatics/btz471

By:

Ferguson, John;
Chang, Joseph

Publication type:

Article