Works matching IS 13674803 AND DT 2020 AND VI 36

Results: 1093

Calibrating variant-scoring methods for clinical decision making.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5709, doi. 10.1093/bioinformatics/btaa943

By:

Benevenuta, Silvia;
Capriotti, Emidio;
Fariselli, Piero

Publication type:

Article

Obelisc: an identical-by-descent mapping tool based on SNP streak.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5567, doi. 10.1093/bioinformatics/btaa940

By:

Sonehara, Kyuto;
Okada, Yukinori

Publication type:

Article

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5712, doi. 10.1093/bioinformatics/btaa622

By:

Touré, Vasundra;
Vercruysse, Steven;
Acencio, Marcio Luis;
Lovering, Ruth C;
Orchard, Sandra;
Bradley, Glyn;
Casals-Casas, Cristina;
Chaouiya, Claudine;
del-Toro, Noemi;
Flobak, Åsmund;
Gaudet, Pascale;
Hermjakob, Henning;
Hoyt, Charles Tapley;
Licata, Luana;
Lægreid, Astrid;
Mungall, Christopher J;
Niknejad, Anne;
Panni, Simona;
Perfetto, Livia;
Porras, Pablo

Publication type:

Article

BERT-GT: cross-sentence n-ary relation extraction with BERT and Graph Transformer.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5678, doi. 10.1093/bioinformatics/btaa1087

By:

Lai, Po-Ting;
Lu, Zhiyong

Publication type:

Article

Improving circRNA–disease association prediction by sequence and ontology representations with convolutional and recurrent neural networks.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5656, doi. 10.1093/bioinformatics/btaa1077

By:

Lu, Chengqian;
Zeng, Min;
Wu, Fang-Xiang;
Li, Min;
Wang, Jianxin

Publication type:

Article

Prediction of histone post-translational modifications using deep learning.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5610, doi. 10.1093/bioinformatics/btaa1075

By:

Baisya, Dipankar Ranjan;
Lonardi, Stefano

Publication type:

Article

Identification of sub-Golgi protein localization by use of deep representation learning features.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5600, doi. 10.1093/bioinformatics/btaa1074

By:

Lv, Zhibin;
Wang, Pingping;
Zou, Quan;
Jiang, Qinghua

Publication type:

Article

The VCBS superfamily forms a third supercluster of β-propellers that includes tachylectin and integrins.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5618, doi. 10.1093/bioinformatics/btaa1085

By:

Pereira, Joana;
Lupas, Andrei N

Publication type:

Article

An open-source high-content analysis workflow for CFTR function measurements using the forskolin-induced swelling assay.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5686, doi. 10.1093/bioinformatics/btaa1073

By:

Hagemeijer, Marne C;
Vonk, Annelotte M;
Awatade, Nikhil T;
Silva, Iris A L;
Tischer, Christian;
Hilsenstein, Volker;
Beekman, Jeffrey M;
Amaral, Margarida D;
Botelho, Hugo M

Publication type:

Article

DockIT: a tool for interactive molecular docking and molecular complex construction.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5698, doi. 10.1093/bioinformatics/btaa1059

By:

Iakovou, Georgios;
Alhazzazi, Mousa;
Hayward, Steven;
Laycock, Stephen D

Publication type:

Article

A two-step approach to testing overall effect of gene–environment interaction for multiple phenotypes.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5640, doi. 10.1093/bioinformatics/btaa1083

By:

Majumdar, Arunabha;
Burch, Kathryn S;
Haldar, Tanushree;
Sankararaman, Sriram;
Pasaniuc, Bogdan;
Gauderman, W James;
Witte, John S

Publication type:

Article

Deep neural networks for predicting restricted mean survival times.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5672, doi. 10.1093/bioinformatics/btaa1082

By:

Zhao, Lili

Publication type:

Article

Accurate, scalable cohort variant calls using DeepVariant and GLnexus.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5582, doi. 10.1093/bioinformatics/btaa1081

By:

Yun, Taedong;
Li, Helen;
Chang, Pi-Chuan;
Lin, Michael F;
Carroll, Andrew;
McLean, Cory Y

Publication type:

Article

NinimHMDA: neural integration of neighborhood information on a multiplex heterogeneous network for multiple types of human Microbe–Disease association.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5665, doi. 10.1093/bioinformatics/btaa1080

By:

Ma, Yuanjing;
Jiang, Hongmei

Publication type:

Article

A non-linear regression method for estimation of gene–environment heritability.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5632, doi. 10.1093/bioinformatics/btaa1079

By:

Kerin, Matthew;
Marchini, Jonathan

Publication type:

Article

The COVID-19 Ontology.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5703, doi. 10.1093/bioinformatics/btaa1057

By:

Sargsyan, Astghik;
Kodamullil, Alpha Tom;
Baksi, Shounak;
Darms, Johannes;
Madan, Sumit;
Gebel, Stephan;
Keminer, Oliver;
Jose, Geena Mariya;
Balabin, Helena;
DeLong, Lauren Nicole;
Kohler, Manfred;
Jacobs, Marc;
Hofmann-Apitius, Martin

Publication type:

Article

A general near-exact k-mer counting method with low memory consumption enables de novo assembly of 106× human sequence data in 2.7 hours.

Published in:

Bioinformatics, 2020, v. 36, p. i625, doi. 10.1093/bioinformatics/btaa890

By:

Shi, Christina Huan;
Yip, Kevin Y.

Publication type:

Article

cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5706, doi. 10.1093/bioinformatics/btaa1061

By:

Eling, Nils;
Damond, Nicolas;
Hoch, Tobias;
Bodenmiller, Bernd

Publication type:

Article

Dementia key gene identification with multi-layered SNP-gene-disease network.

Published in:

Bioinformatics, 2020, v. 36, p. i831, doi. 10.1093/bioinformatics/btaa814

By:

Lee, Dong-gi;
Kim, Myungjun;
Son, Sang Joon;
Hong, Chang Hyung;
Shin, Hyunjung

Publication type:

Article

VINYL: Variant prIoritizatioN bY survivaL analysis.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5590, doi. 10.1093/bioinformatics/btaa1067

By:

Chiara, Matteo;
Mandreoli, Pietro;
Tangaro, Marco Antonio;
D'Erchia, Anna Maria;
Sorrentino, Sandro;
Forleo, Cinzia;
Horner, David S;
Zambelli, Federico;
Pesole, Graziano

Publication type:

Article

ECCB2020: the 19th European Conference on Computational Biology.

Published in:

Bioinformatics, 2020, v. 36, p. i569, doi. 10.1093/bioinformatics/btaa979

By:

Capella-Gutierrez, Salvador;
Alloza, Eva;
Gallastegui, Edurne;
Kavakiotis, Ioannis;
Harrow, Jen;
Langtry, Alberto;
Committee, the ECCB2020 Steering;
Valencia, Alfonso

Publication type:

Article

ClonoMatch: a tool for identifying homologous immunoglobulin and T-cell receptor sequences in large databases.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5695, doi. 10.1093/bioinformatics/btaa1028

By:

Jones, Taylor;
Day, Samuel B;
Myers, Luke;
Crowe, James E;
Soto, Cinque

Publication type:

Article

Predicting Nash equilibria for microbial metabolic interactions.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5649, doi. 10.1093/bioinformatics/btaa1014

By:

Cai, Jingyi;
Tan, Tianwei;
Chan, Siu H J

Publication type:

Article

Novel SARS-CoV-2 encoded small RNAs in the passage to humans.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5571, doi. 10.1093/bioinformatics/btaa1002

By:

Merino, Gabriela A;
Raad, Jonathan;
Bugnon, Leandro A;
Yones, Cristian;
Kamenetzky, Laura;
Claus, Juan;
Ariel, Federico;
Milone, Diego H;
Stegmayer, Georgina

Publication type:

Article

glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5701, doi. 10.1093/bioinformatics/btaa1009

By:

Ahlmann-Eltze, Constantin;
Huber, Wolfgang

Publication type:

Article

SODA: multi-locus species delimitation using quartet frequencies.

Published in:

Bioinformatics, 2020, v. 36, n. 24, p. 5623, doi. 10.1093/bioinformatics/btaa1010

By:

Rabiee, Maryam;
Mirarab, Siavash

Publication type:

Article

MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants.

Published in:

Bioinformatics, 2020, v. 36, p. i618, doi. 10.1093/bioinformatics/btaa889

By:

Ylla, Guillem;
Liu, Tianyuan;
Conesa, Ana

Publication type:

Article

Supervised learning on phylogenetically distributed data.

Published in:

Bioinformatics, 2020, v. 36, p. i895, doi. 10.1093/bioinformatics/btaa842

By:

Layne, Elliot;
Dort, Erika N;
Hamelin, Richard;
Li, Yue;
Blanchette, Mathieu

Publication type:

Article

DeepCDR: a hybrid graph convolutional network for predicting cancer drug response.

Published in:

Bioinformatics, 2020, v. 36, p. i911, doi. 10.1093/bioinformatics/btaa822

By:

Liu, Qiao;
Hu, Zhiqiang;
Jiang, Rui;
Zhou, Mu

Publication type:

Article

Ensembling graph attention networks for human microbe–drug association prediction.

Published in:

Bioinformatics, 2020, v. 36, p. i779, doi. 10.1093/bioinformatics/btaa891

By:

Long, Yahui;
Wu, Min;
Liu, Yong;
Kwoh, Chee Keong;
Luo, Jiawei;
Li, Xiaoli

Publication type:

Article

Enhancing statistical power in temporal biomarker discovery through representative shapelet mining.

Published in:

Bioinformatics, 2020, v. 36, p. i840, doi. 10.1093/bioinformatics/btaa815

By:

Gumbsch, Thomas;
Bock, Christian;
Moor, Michael;
Rieck, Bastian;
Borgwardt, Karsten

Publication type:

Article

Inferring signaling pathways with probabilistic programming.

Published in:

Bioinformatics, 2020, v. 36, p. i822, doi. 10.1093/bioinformatics/btaa861

By:

Merrell, David;
Gitter, Anthony

Publication type:

Article

SCIM: universal single-cell matching with unpaired feature sets.

Published in:

Bioinformatics, 2020, v. 36, p. i919, doi. 10.1093/bioinformatics/btaa843

By:

Stark, Stefan G;
Ficek, Joanna;
Locatello, Francesco;
Bonilla, Ximena;
Chevrier, Stéphane;
Singer, Franziska;
Consortium, Tumor Profiler;
Rätsch, Gunnar;
Lehmann, Kjong-Van

Publication type:

Article

Batch equalization with a generative adversarial network.

Published in:

Bioinformatics, 2020, v. 36, p. i875, doi. 10.1093/bioinformatics/btaa819

By:

Qian, Wesley Wei;
Xia, Cassandra;
Venugopalan, Subhashini;
Narayanaswamy, Arunachalam;
Dimon, Michelle;
Ashdown, George W;
Baum, Jake;
Peng, Jian;
Ando, D Michael

Publication type:

Article

FastSK: fast sequence analysis with gapped string kernels.

Published in:

Bioinformatics, 2020, v. 36, p. i857, doi. 10.1093/bioinformatics/btaa817

By:

Blakely, Derrick;
Collins, Eamon;
Singh, Ritambhara;
Norton, Andrew;
Lanchantin, Jack;
Qi, Yanjun

Publication type:

Article

A Siamese neural network model for the prioritization of metabolic disorders by integrating real and simulated data.

Published in:

Bioinformatics, 2020, v. 36, p. i787, doi. 10.1093/bioinformatics/btaa841

By:

Messa, Gian Marco;
Napolitano, Francesco;
Elsea, Sarah H.;
Bernardo, Diego di;
Gao, Xin

Publication type:

Article

A neuro-evolution approach to infer a Boolean network from time-series gene expressions.

Published in:

Bioinformatics, 2020, v. 36, p. i762, doi. 10.1093/bioinformatics/btaa840

By:

Barman, Shohag;
Kwon, Yung-Keun

Publication type:

Article

Geometricus represents protein structures as shape-mers derived from moment invariants.

Published in:

Bioinformatics, 2020, v. 36, p. i718, doi. 10.1093/bioinformatics/btaa839

By:

Durairaj, Janani;
Akdel, Mehmet;
Ridder, Dick de;
Dijk, Aalt D J van

Publication type:

Article

SCHNEL: scalable clustering of high dimensional single-cell data.

Published in:

Bioinformatics, 2020, v. 36, p. i849, doi. 10.1093/bioinformatics/btaa816

By:

Abdelaal, Tamim;
Raadt, Paul de;
Lelieveldt, Boudewijn P F;
Reinders, Marcel J T;
Mahfouz, Ahmed

Publication type:

Article

The effect of kinship in re-identification attacks against genomic data sharing beacons.

Published in:

Bioinformatics, 2020, v. 36, p. i903, doi. 10.1093/bioinformatics/btaa821

By:

Ayoz, Kerem;
Aysen, Miray;
Ayday, Erman;
Cicek, A Ercument

Publication type:

Article

Using a GTR+Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violated.

Published in:

Bioinformatics, 2020, v. 36, p. i884, doi. 10.1093/bioinformatics/btaa820

By:

Barba-Montoya, Jose;
Tao, Qiqing;
Kumar, Sudhir

Publication type:

Article

FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2.

Published in:

Bioinformatics, 2020, v. 36, p. i813, doi. 10.1093/bioinformatics/btaa813

By:

Renz, Alina;
Widerspick, Lina;
Dräger, Andreas

Publication type:

Article

Matrix (factorization) reloaded: flexible methods for imputing genetic interactions with cross-species and side information.

Published in:

Bioinformatics, 2020, v. 36, p. i866, doi. 10.1093/bioinformatics/btaa818

By:

Fan, Jason;
Li, Xuan Cindy;
Crovella, Mark;
Leiserson, Mark D M

Publication type:

Article

Probabilistic graphlets capture biological function in probabilistic molecular networks.

Published in:

Bioinformatics, 2020, v. 36, p. i804, doi. 10.1093/bioinformatics/btaa812

By:

Doria-Belenguer, Sergio;
Youssef, Markus K.;
Böttcher, René;
Malod-Dognin, Noël;
Pržulj, Nataša

Publication type:

Article

Padhoc: a computational pipeline for pathway reconstruction on the fly.

Published in:

Bioinformatics, 2020, v. 36, p. i795, doi. 10.1093/bioinformatics/btaa811

By:

Casaní-Galdón, Salvador;
Pereira, Cecile;
Conesa, Ana

Publication type:

Article

Feasible-metabolic-pathway-exploration technique using chemical latent space.

Published in:

Bioinformatics, 2020, v. 36, p. i770, doi. 10.1093/bioinformatics/btaa809

By:

Fuji, Taiki;
Nakazawa, Shiori;
Ito, Kiyoto

Publication type:

Article

APOD: accurate sequence-based predictor of disordered flexible linkers.

Published in:

Bioinformatics, 2020, v. 36, p. i754, doi. 10.1093/bioinformatics/btaa808

By:

Peng, Zhenling;
Xing, Qian;
Kurgan, Lukasz

Publication type:

Article

New mixture models for decoy-free false discovery rate estimation in mass spectrometry proteomics.

Published in:

Bioinformatics, 2020, v. 36, p. i745, doi. 10.1093/bioinformatics/btaa807

By:

Peng, Yisu;
Jain, Shantanu;
Li, Yong Fuga;
Greguš, Michal;
Ivanov, Alexander R.;
Vitek, Olga;
Radivojac, Predrag

Publication type:

Article

PROBselect: accurate prediction of protein-binding residues from proteins sequences via dynamic predictor selection.

Published in:

Bioinformatics, 2020, v. 36, p. i735, doi. 10.1093/bioinformatics/btaa806

By:

Zhang, Fuhao;
Shi, Wenbo;
Zhang, Jian;
Zeng, Min;
Li, Min;
Kurgan, Lukasz

Publication type:

Article

GRaSP: a graph-based residue neighborhood strategy to predict binding sites.

Published in:

Bioinformatics, 2020, v. 36, p. i726, doi. 10.1093/bioinformatics/btaa805

By:

Santana, Charles A;
Silveira, Sabrina de A;
Moraes, João P A;
Izidoro, Sandro C;
Melo-Minardi, Raquel C de;
Ribeiro, António J M;
Tyzack, Jonathan D;
Borkakoti, Neera;
Thornton, Janet M

Publication type:

Article