Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 8

Results: 31

TOBMI: trans-omics block missing data imputation using a k-nearest neighbor weighted approach.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1278, doi. 10.1093/bioinformatics/bty796

By:

Dong, Xuesi;
Lin, Lijuan;
Zhang, Ruyang;
Zhao, Yang;
Christiani, David C;
Wei, Yongyue;
Chen, Feng

Publication type:

Article

STatistical Inference Relief (STIR) feature selection.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1358, doi. 10.1093/bioinformatics/bty788

By:

Le, Trang T;
Urbanowicz, Ryan J;
Moore, Jason H;
McKinney, Brett A

Publication type:

Article

Squiggle: a user-friendly two-dimensional DNA sequence visualization tool.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1425, doi. 10.1093/bioinformatics/bty807

By:

Lee, Benjamin D

Publication type:

Article

Powerful and efficient SNP-set association tests across multiple phenotypes using GWAS summary data.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1366, doi. 10.1093/bioinformatics/bty811

By:

Guo, Bin;
Wu, Baolin

Publication type:

Article

smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1299, doi. 10.1093/bioinformatics/bty790

By:

Xu, Chang;
Gu, Xiujing;
Padmanabhan, Raghavendra;
Wu, Zhong;
Peng, Quan;
DiCarlo, John;
Wang, Yexun

Publication type:

Article

SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1269, doi. 10.1093/bioinformatics/bty793

By:

Yang, Yuchen;
Huh, Ruth;
Culpepper, Houston W;
Lin, Yuan;
Love, Michael I;
Li, Yun

Publication type:

Article

TCellXTalk facilitates the detection of co-modified peptides for the study of protein post-translational modification cross-talk in T cells.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1404, doi. 10.1093/bioinformatics/bty805

By:

Casanovas, Albert;
Gallardo, Óscar;
Carrascal, Montserrat;
Abian, Joaquin

Publication type:

Article

Integrating hypertension phenotype and genotype with hybrid non-negative matrix factorization.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1395, doi. 10.1093/bioinformatics/bty804

By:

Luo, Yuan;
Mao, Chengsheng;
Yang, Yiben;
Wang, Fei;
Ahmad, Faraz S;
Arnett, Donna;
Irvin, Marguerite R;
Shah, Sanjiv J

Publication type:

Article

RNApuzzler: efficient outerplanar drawing of RNA-secondary structures.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1342, doi. 10.1093/bioinformatics/bty817

By:

Wiegreffe, Daniel;
Alexander, Daniel;
Stadler, Peter F;
Zeckzer, Dirk

Publication type:

Article

Parkour LIMS: high-quality sample preparation in next generation sequencing.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1422, doi. 10.1093/bioinformatics/bty820

By:

Anatskiy, E;
Ryan, D P;
Grüning, B A;
Arrigoni, L;
Manke, T;
Bönisch, U

Publication type:

Article

SequencEnG: an interactive knowledge base of sequencing techniques.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1438, doi. 10.1093/bioinformatics/bty794

By:

Zhang, Yi;
Manjunath, Mohith;
Kim, Yeonsung;
Heintz, Joerg;
Song, Jun S

Publication type:

Article

KeggExp: a web server for visual integration of KEGG pathways and expression profile data.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1430, doi. 10.1093/bioinformatics/bty798

By:

Liu, Xian;
Han, Mingfei;
Zhao, Chen;
Chang, Cheng;
Zhu, Yunping;
Ge, Changhui;
Yin, Ronghua;
Zhan, Yiqun;
Li, Changyan;
Yu, Miao;
He, Fuchu;
Yang, Xiaoming

Publication type:

Article

Inference and visualization of DNA damage patterns using a grade of membership model.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1292, doi. 10.1093/bioinformatics/bty779

By:

Al-Asadi, Hussein;
Dey, Kushal K;
Novembre, John;
Stephens, Matthew

Publication type:

Article

Prediction of protein group function by iterative classification on functional relevance network.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1388, doi. 10.1093/bioinformatics/bty787

By:

Khan, Ishita K;
Jain, Aashish;
Rawi, Reda;
Bensmail, Halima;
Kihara, Daisuke

Publication type:

Article

Gimpute: an efficient genetic data imputation pipeline.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1433, doi. 10.1093/bioinformatics/bty814

By:

Chen, Junfang;
Lippold, Dietmar;
Frank, Josef;
Rayner, William;
Meyer-Lindenberg, Andreas;
Schwarz, Emanuel

Publication type:

Article

Development of a protein–ligand extended connectivity (PLEC) fingerprint and its application for binding affinity predictions.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1334, doi. 10.1093/bioinformatics/bty757

By:

Wójcikowski, Maciej;
Kukiełka, Michał;
Stepniewska-Dziubinska, Marta M;
Siedlecki, Pawel

Publication type:

Article

GenomeFlow: a comprehensive graphical tool for modeling and analyzing 3D genome structure.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1416, doi. 10.1093/bioinformatics/bty802

By:

Trieu, Tuan;
Oluwadare, Oluwatosin;
Wopata, Julia;
Cheng, Jianlin

Publication type:

Article

A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer.

Published in:

2019

By:

Masutani, Bansho;
Morishita, Shinichi

Publication type:

Correction Notice

Filtering and inference for stochastic oscillators with distributed delays.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1380, doi. 10.1093/bioinformatics/bty782

By:

Calderazzo, Silvia;
Brancaccio, Marco;
Finkenstädt, Bärbel

Publication type:

Article

Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple species.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1326, doi. 10.1093/bioinformatics/bty824

By:

Wei, Leyi;
Luan, Shasha;
Nagai, Luis Augusto Eijy;
Su, Ran;
Zou, Quan

Publication type:

Article

The Encyclopedia of Proteome Dynamics: the KinoViewer.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1441, doi. 10.1093/bioinformatics/bty823

By:

Brenes, Alejandro;
Lamond, Angus I

Publication type:

Article

The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1427, doi. 10.1093/bioinformatics/bty784

By:

Enache, Oana M;
Lahr, David L;
Natoli, Ted E;
Litichevskiy, Lev;
Wadden, David;
Flynn, Corey;
Gould, Joshua;
Asiedu, Jacob K;
Narayan, Rajiv;
Subramanian, Aravind

Publication type:

Article

Dante: genotyping of known complex and expanded short tandem repeats.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1310, doi. 10.1093/bioinformatics/bty791

By:

Budiš, Jaroslav;
Kucharík, Marcel;
Ďuriš, František;
Gazdarica, Juraj;
Zrubcová, Michaela;
Ficek, Andrej;
Szemes, Tomáš;
Brejová, Broňa;
Radvanszky, Jan

Publication type:

Article

Combining count- and length-based z-scores leads to improved predictions in non-invasive prenatal testing.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1284, doi. 10.1093/bioinformatics/bty806

By:

Budis, Jaroslav;
Gazdarica, Juraj;
Radvanszky, Jan;
Szucs, Gabor;
Kucharik, Marcel;
Strieskova, Lucia;
Gazdaricova, Iveta;
Harsanyova, Maria;
Duris, Frantisek;
Minarik, Gabriel;
Sekelska, Martina;
Nagy, Balint;
Turna, Jan;
Szemes, Tomas

Publication type:

Article

A clustering linear combination approach to jointly analyze multiple phenotypes for GWAS.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1373, doi. 10.1093/bioinformatics/bty810

By:

Sha, Qiuying;
Wang, Zhenchuan;
Zhang, Xiao;
Zhang, Shuanglin

Publication type:

Article

CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1436, doi. 10.1093/bioinformatics/bty819

By:

Ashtiani, Minoo;
Mirzaie, Mehdi;
Jafari, Mohieddin

Publication type:

Article

CATANA: a tool for generating comprehensive annotations of alternative transcript events.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1414, doi. 10.1093/bioinformatics/bty795

By:

Shiau, Cheng-Kai;
Huang, Jia-Hsin;
Tsai, Huai-Kuang

Publication type:

Article

BhGLM: Bayesian hierarchical GLMs and survival models, with applications to genomics and epidemiology.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1419, doi. 10.1093/bioinformatics/bty803

By:

Yi, Nengjun;
Tang, Zaixiang;
Zhang, Xinyan;
Guo, Boyi

Publication type:

Article

bcGST—an interactive bias-correction method to identify over-represented gene-sets in boutique arrays.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1350, doi. 10.1093/bioinformatics/bty783

By:

Wang, Kevin Y X;
Menzies, Alexander M;
Silva, Ines P;
Wilmott, James S;
Yan, Yibing;
Wongchenko, Matthew;
Kefford, Richard F;
Scolyer, Richard A;
Long, Georgina V;
Tarr, Garth;
Mueller, Samuel;
Yang, Jean Y H

Publication type:

Article

A Bayesian framework for high-throughput T cell receptor pairing.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1318, doi. 10.1093/bioinformatics/bty801

By:

Holec, Patrick V;
Berleant, Joseph;
Bathe, Mark;
Birnbaum, Michael E

Publication type:

Article

Ambiguous splice sites distinguish circRNA and linear splicing in the human genome.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1263, doi. 10.1093/bioinformatics/bty785

By:

Dehghannasiri, Roozbeh;
Szabo, Linda;
Salzman, Julia

Publication type:

Article