Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 6

Results: 31

Adjutant: an R-based tool to support topic discovery for systematic and literature reviews.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1070, doi. 10.1093/bioinformatics/bty722

By:

Crisan, Anamaria;
Munzner, Tamara;
Gardy, Jennifer L

Publication type:

Article

FastSpar: rapid and scalable correlation estimation for compositional data.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1064, doi. 10.1093/bioinformatics/bty734

By:

Watts, Stephen C;
Ritchie, Scott C;
Inouye, Michael;
Holt, Kathryn E

Publication type:

Article

miES: predicting the essentiality of miRNAs with machine learning and sequence features.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1053, doi. 10.1093/bioinformatics/bty738

By:

Song, Fei;
Cui, Chunmei;
Gao, Lin;
Cui, Qinghua

Publication type:

Article

ISDB: a database toolkit for storing and analyzing viral integration site data.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1073, doi. 10.1093/bioinformatics/bty712

By:

Sibley, Thomas R;
Silberman, Evan J;
Mullins, James I

Publication type:

Article

Improving the prediction of protein–nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 930, doi. 10.1093/bioinformatics/bty756

By:

Su, Hong;
Liu, Mengchen;
Sun, Saisai;
Peng, Zhenling;
Yang, Jianyi

Publication type:

Article

DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1033, doi. 10.1093/bioinformatics/bty709

By:

Kuksa, Pavel P;
Amlie-Wolf, Alexandre;
Katanić, Živadin;
Valladares, Otto;
Wang, Li-San;
Leung, Yuk Yee

Publication type:

Article

Comparative analysis of methods for evaluation of protein models against native structures.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 937, doi. 10.1093/bioinformatics/bty760

By:

Olechnovič, Kliment;
Monastyrskyy, Bohdan;
Kryshtafovych, Andriy;
Venclovas, Česlovas

Publication type:

Article

A cluster robustness score for identifying cell subpopulations in single cell gene expression datasets from heterogeneous tissues and tumors.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 962, doi. 10.1093/bioinformatics/bty708

By:

Kanter, Itamar;
Dalerba, Piero;
Kalisky, Tomer

Publication type:

Article

Characterizing protein–DNA binding event subtypes in ChIP-exo data.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 903, doi. 10.1093/bioinformatics/bty703

By:

Yamada, Naomi;
Lai, William K M;
Farrell, Nina;
Pugh, B Franklin;
Mahony, Shaun

Publication type:

Article

Bigmelon: tools for analysing large DNA methylation datasets.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 981, doi. 10.1093/bioinformatics/bty713

By:

Gorrie-Stone, Tyler J;
Smart, Melissa C;
Saffari, Ayden;
Malki, Karim;
Hannon, Eilis;
Burrage, Joe;
Mill, Jonathan;
Kumari, Meena;
Schalkwyk, Leonard C

Publication type:

Article

A Bayesian model for single cell transcript expression analysis on MERFISH data.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 995, doi. 10.1093/bioinformatics/bty718

By:

Köster, Johannes;
Brown, Myles;
Liu, X Shirley

Publication type:

Article

Variable selection and validation in multivariate modelling.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 972, doi. 10.1093/bioinformatics/bty710

By:

Shi, Lin;
Westerhuis, Johan A;
Rosén, Johan;
Landberg, Rikard;
Brunius, Carl

Publication type:

Article

Traitpedia: a collaborative effort to gather species traits.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1079, doi. 10.1093/bioinformatics/bty743

By:

Mier, Pablo;
Andrade-Navarro, Miguel A

Publication type:

Article

admetSAR 2.0: web-service for prediction and optimization of chemical ADMET properties.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1067, doi. 10.1093/bioinformatics/bty707

By:

Yang, Hongbin;
Lou, Chaofeng;
Sun, Lixia;
Li, Jie;
Cai, Yingchun;
Wang, Zhuang;
Li, Weihua;
Liu, Guixia;
Tang, Yun

Publication type:

Article

ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1058, doi. 10.1093/bioinformatics/bty714

By:

Navarro, José Fernández;
Lundeberg, Joakim;
Ståhl, Patrik L

Publication type:

Article

Resolution-exchanged structural modeling and simulations jointly unravel that subunit rolling underlies the mechanism of programmed ribosomal frameshifting.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 945, doi. 10.1093/bioinformatics/bty762

By:

Chang, Kai-Chun;
Salawu, Emmanuel Oluwatobi;
Chang, Yuan-Yu;
Wen, Jin-Der;
Yang, Lee-Wei

Publication type:

Article

RepeatCraft: a meta-pipeline for repetitive element de-fragmentation and annotation.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1051, doi. 10.1093/bioinformatics/bty745

By:

Wong, Wai Yee;
Simakov, Oleg

Publication type:

Article

Protease target prediction via matrix factorization.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 923, doi. 10.1093/bioinformatics/bty746

By:

Marini, Simone;
Vitali, Francesca;
Rampazzi, Sara;
Demartini, Andrea;
Akutsu, Tatsuya

Publication type:

Article

PolyQTL: Bayesian multiple eQTL detection with control for population structure and sample relatedness.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1061, doi. 10.1093/bioinformatics/bty728

By:

Zeng, Biao;
Gibson, Greg

Publication type:

Article

Penalized co-inertia analysis with applications to -omics data.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1018, doi. 10.1093/bioinformatics/bty726

By:

Min, Eun Jeong;
Safo, Sandra E;
Long, Qi

Publication type:

Article

Parallel clustering of single cell transcriptomic data with split-merge sampling on Dirichlet process mixtures.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 953, doi. 10.1093/bioinformatics/bty702

By:

Duan, Tiehang;
Pinto, José P;
Xie, Xiaohui

Publication type:

Article

NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1040, doi. 10.1093/bioinformatics/bty741

By:

Tu, Qichao;
Lin, Lu;
Cheng, Lei;
Deng, Ye;
He, Zhili

Publication type:

Article

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1076, doi. 10.1093/bioinformatics/bty742

By:

Velde, K Joeri van der;
Imhann, Floris;
Charbon, Bart;
Pang, Chao;
Enckevort, David van;
Slofstra, Mariska;
Barbieri, Ruggero;
Alberts, Rudi;
Hendriksen, Dennis;
Kelpin, Fleur;
Haan, Mark de;
Boer, Tommy de;
Haakma, Sido;
Stroomberg, Connor;
Scholtens, Salome;
van de Geijn, Gert-Jan;
Festen, Eleonora A M;
Weersma, Rinse K;
Swertz, Morris A

Publication type:

Article

A generalized framework for controlling FDR in gene regulatory network inference.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1026, doi. 10.1093/bioinformatics/bty764

By:

Morgan, Daniel;
Tjärnberg, Andreas;
Nordling, Torbjörn E M;
Sonnhammer, Erik L L

Publication type:

Article

Efficient computation of the kinship coefficients.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1002, doi. 10.1093/bioinformatics/bty725

By:

Kirkpatrick, Brent;
Ge, Shufei;
Wang, Liangliang

Publication type:

Article

MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples.

Published in:

2019

By:

Asgari, Ehsaneddin;
Garakani, Kiavash;
McHardy, Alice C;
Mofrad, Mohammad R K

Publication type:

Correction Notice

Large-scale comparative analysis of microbial pan-genomes using PanOCT.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1049, doi. 10.1093/bioinformatics/bty744

By:

Inman, Jason M;
Sutton, Granger G;
Beck, Erin;
Brinkac, Lauren M;
Clarke, Thomas H;
Fouts, Derrick E

Publication type:

Article

Dot2dot: accurate whole-genome tandem repeats discovery.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 914, doi. 10.1093/bioinformatics/bty747

By:

Genovese, Loredana M;
Mosca, Marco M;
Pellegrini, Marco;
Geraci, Filippo

Publication type:

Article

Inferring gene expression networks with hubs using a degree weighted Lasso approach.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 987, doi. 10.1093/bioinformatics/bty716

By:

Sulaimanov, Nurgazy;
Kumar, Sunil;
Burdet, Frédéric;
Ibberson, Mark;
Pagni, Marco;
Koeppl, Heinz

Publication type:

Article

The Distance Precision Matrix: computing networks from non-linear relationships.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1009, doi. 10.1093/bioinformatics/bty724

By:

Ghanbari, Mahsa;
Lasserre, Julia;
Vingron, Martin

Publication type:

Article

WIlsON: Web-based Interactive Omics VisualizatioN.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1055, doi. 10.1093/bioinformatics/bty711

By:

Schultheis, Hendrik;
Kuenne, Carsten;
Preussner, Jens;
Wiegandt, Rene;
Fust, Annika;
Bentsen, Mette;
Looso, Mario

Publication type:

Article