Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 5

Results: 30

Clustering of temporal gene expression data with mixtures of mixed effects models with a penalized likelihood.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 778, doi. 10.1093/bioinformatics/bty696

By:

Lu, Darlene;
Tripodis, Yorghos;
Gerstenfeld, Louis C;
Demissie, Serkalem

Publication type:

Article

checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 901, doi. 10.1093/bioinformatics/bty706

By:

Varet, Hugo;
Coppée, Jean-Yves

Publication type:

Article

Cell membrane proteins with high N-glycosylation, high expression and multiple interaction partners are preferred by mammalian viruses as receptors.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 723, doi. 10.1093/bioinformatics/bty694

By:

Zhang, Zheng;
Zhu, Zhaozhong;
Chen, Wenjun;
Cai, Zena;
Xu, Beibei;
Tan, Zhiying;
Wu, Aiping;
Ge, Xingyi;
Guo, Xinhong;
Tan, Zhongyang;
Xia, Zanxian;
Zhu, Haizhen;
Jiang, Taijiao;
Peng, Yousong

Publication type:

Article

CharGer: clinical Characterization of Germline variants.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 865, doi. 10.1093/bioinformatics/bty649

By:

Scott, Adam D;
Huang, Kuan-Lin;
Weerasinghe, Amila;
Mashl, R Jay;
Gao, Qingsong;
Rodrigues, Fernanda Martins;
Wyczalkowski, Matthew A;
Ding, Li

Publication type:

Article

C3D: a tool to predict 3D genomic interactions between cis-regulatory elements.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 877, doi. 10.1093/bioinformatics/bty717

By:

Mehdi, Tahmid;
Bailey, Swneke D;
Guilhamon, Paul;
Lupien, Mathieu

Publication type:

Article

Benchmarking optimization methods for parameter estimation in large kinetic models.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 830, doi. 10.1093/bioinformatics/bty736

By:

Villaverde, Alejandro F;
Fröhlich, Fabian;
Weindl, Daniel;
Hasenauer, Jan;
Banga, Julio R

Publication type:

Article

StructureProfiler: an all-in-one tool for 3D protein structure profiling.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 874, doi. 10.1093/bioinformatics/bty692

By:

Meyder, Agnes;
Kampen, Stefanie;
Sieg, Jochen;
Fährrolfes, Rainer;
Friedrich, Nils-Ole;
Flachsenberg, Florian;
Rarey, Matthias

Publication type:

Article

Batch effects correction for microbiome data with Dirichlet-multinomial regression.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 807, doi. 10.1093/bioinformatics/bty729

By:

Dai, Zhenwei;
Wong, Sunny H;
Yu, Jun;
Wei, Yingying

Publication type:

Article

SpaRC: scalable sequence clustering using Apache Spark.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 760, doi. 10.1093/bioinformatics/bty733

By:

Shi, Lizhen;
Meng, Xiandong;
Tseng, Elizabeth;
Mascagni, Michael;
Wang, Zhong

Publication type:

Article

SKmDB: an integrated database of next generation sequencing information in skeletal muscle.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 847, doi. 10.1093/bioinformatics/bty705

By:

Yuan, Jie;
Zhou, Jiajian;
Wang, Huating;
Sun, Hao

Publication type:

Article

quantitative map of protein sequence space for the cis-defensin superfamily.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 743, doi. 10.1093/bioinformatics/bty697

By:

Shafee, Thomas;
Anderson, Marilyn A

Publication type:

Article

QuantiNemo 2: a Swiss knife to simulate complex demographic and genetic scenarios, forward and backward in time.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 886, doi. 10.1093/bioinformatics/bty737

By:

Neuenschwander, Samuel;
Michaud, Frédéric;
Goudet, Jérôme

Publication type:

Article

Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 729, doi. 10.1093/bioinformatics/bty688

By:

Masseroli, Marco;
Canakoglu, Arif;
Pinoli, Pietro;
Kaitoua, Abdulrahman;
Gulino, Andrea;
Horlova, Olha;
Nanni, Luca;
Bernasconi, Anna;
Perna, Stefano;
Stamoulakatou, Eirini;
Ceri, Stefano

Publication type:

Article

Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 753, doi. 10.1093/bioinformatics/bty704

By:

Jain, Aashish;
Kihara, Daisuke

Publication type:

Article

PathwayConnector: finding complementary pathways to enhance functional analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 889, doi. 10.1093/bioinformatics/bty693

By:

Minadakis, George;
Zachariou, Margarita;
Oulas, Anastasis;
Spyrou, George M

Publication type:

Article

MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 856, doi. 10.1093/bioinformatics/bty689

By:

Tierrafría, V H;
Mejía-Almonte, C;
Camacho-Zaragoza, J M;
Salgado, H;
Alquicira, K;
Ishida, C;
Gama-Castro, S;
Collado-Vides, J

Publication type:

Article

PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 898, doi. 10.1093/bioinformatics/bty727

By:

Chang, Cheng;
Li, Mansheng;
Guo, Chaoping;
Ding, Yuqing;
Xu, Kaikun;
Han, Mingfei;
He, Fuchu;
Zhu, Yunping

Publication type:

Article

PairedFB: a full hierarchical Bayesian model for paired RNA-seq data with heterogeneous treatment effects.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 787, doi. 10.1093/bioinformatics/bty731

By:

Bian, Yuanyuan;
He, Chong;
Hou, Jie;
Cheng, Jianlin;
Qiu, Jing

Publication type:

Article

AncestryView: data-driven visualization of whole-genome local-ancestry.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 883, doi. 10.1093/bioinformatics/bty732

By:

Zhao, Yan;
Ma, Li;
Jiang, Sukun;
Song, George D;
He, Shaohua;
Li, Hong;
Song, Qing

Publication type:

Article

MIPUP: minimum perfect unmixed phylogenies for multi-sampled tumors via branchings and ILP.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 769, doi. 10.1093/bioinformatics/bty683

By:

Husić, Edin;
Li, Xinyue;
Hujdurović, Ademir;
Mehine, Miika;
Rizzi, Romeo;
Mäkinen, Veli;
Milanič, Martin;
Tomescu, Alexandru I

Publication type:

Article

Haplotype matching in large cohorts using the Li and Stephens model.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 798, doi. 10.1093/bioinformatics/bty735

By:

Lunter, Gerton

Publication type:

Article

isiKnock: in silico knockouts in signaling pathways.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 892, doi. 10.1093/bioinformatics/bty700

By:

Hannig, Jennifer;
Giese, Heiko;
Schweizer, Börje;
Amstein, Leonie;
Ackermann, Jörg;
Koch, Ina

Publication type:

Article

On entropy and information in gene interaction networks.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 815, doi. 10.1093/bioinformatics/bty691

By:

Wallace, Z S;
Rosenthal, S B;
Fisch, K M;
Ideker, T;
Sasik, R

Publication type:

Article

ImaGEO: integrative gene expression meta-analysis from GEO database.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 880, doi. 10.1093/bioinformatics/bty721

By:

Toro-Domínguez, Daniel;
Martorell-Marugán, Jordi;
López-Domínguez, Raúl;
García-Moreno, Adrián;
González-Rumayor, Víctor;
Alarcón-Riquelme, Marta E;
Carmona-Sáez, Pedro

Publication type:

Article

Genome Detective: an automated system for virus identification from high-throughput sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 871, doi. 10.1093/bioinformatics/bty695

By:

Vilsker, Michael;
Moosa, Yumna;
Nooij, Sam;
Fonseca, Vagner;
Ghysens, Yoika;
Dumon, Korneel;
Pauwels, Raf;
Alcantara, Luiz Carlos;
Eynden, Ewout Vanden;
Vandamme, Anne-Mieke;
Deforche, Koen;
Oliveira, Tulio de

Publication type:

Article

gemBS: high throughput processing for DNA methylation data from bisulfite sequencing.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 737, doi. 10.1093/bioinformatics/bty690

By:

Merkel, Angelika;
Fernández-Callejo, Marcos;
Casals, Eloi;
Marco-Sola, Santiago;
Schuyler, Ronald;
Gut, Ivo G;
Heath, Simon C

Publication type:

Article

DCARS: differential correlation across ranked samples.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 823, doi. 10.1093/bioinformatics/bty698

By:

Ghazanfar, Shila;
Strbenac, Dario;
Ormerod, John T;
Yang, Jean Y H;
Patrick, Ellis

Publication type:

Article

Increased sensitivity with automated validation of XL-MS cleavable peptide crosslinks.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 895, doi. 10.1093/bioinformatics/bty720

By:

Keller, Andrew;
Chavez, Juan D;
Bruce, James E

Publication type:

Article

Container-based bioinformatics with Pachyderm.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 839, doi. 10.1093/bioinformatics/bty699

By:

Novella, Jon Ander;
Khoonsari, Payam Emami;
Herman, Stephanie;
Whitenack, Daniel;
Capuccini, Marco;
Burman, Joachim;
Kultima, Kim;
Spjuth, Ola

Publication type:

Article

VARAN-GIE: curation of genomic interval sets.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 868, doi. 10.1093/bioinformatics/bty723

By:

Popitsch, Niko

Publication type:

Article