Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 4

Results: 34

zfRegeneration: a database for gene expression profiling during regeneration.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 703, doi. 10.1093/bioinformatics/bty659

By:

Nieto-Arellano, Rocío;
Sánchez-Iranzo, Héctor

Publication type:

Article

WebMetabase: cleavage sites analysis tool for natural and unnatural substrates from diverse data source.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 650, doi. 10.1093/bioinformatics/bty667

By:

Radchenko, Tatiana;
Zamora, Ismael;
Fontaine, Fabien;
Morettoni, Luca

Publication type:

Article

VisioProt-MS: interactive 2D maps from intact protein mass spectrometry.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 679, doi. 10.1093/bioinformatics/bty680

By:

Locard-Paulet, Marie;
Parra, Julien;
Albigot, Renaud;
Mouton-Barbosa, Emmanuelle;
Bardi, Laurent;
Burlet-Schiltz, Odile;
Marcoux, Julien

Publication type:

Article

TIMING 2.0: high-throughput single-cell profiling of dynamic cell–cell interactions by time-lapse imaging microscopy in nanowell grids.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 706, doi. 10.1093/bioinformatics/bty676

By:

Lu, Hengyang;
Li, Jiabing;
Mayerich, David;
Roysam, Badrinath;
Martinez-Paniagua, Melisa A;
Bandey, Irfan N;
Varadarajan, Navin;
Amritkar, Amit;
Singh, Harjeet

Publication type:

Article

Terabase Search Engine: a large-scale relational database of short-read sequences.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 665, doi. 10.1093/bioinformatics/bty657

By:

Wilton, Richard;
Wheelan, Sarah J;
Szalay, Alexander S;
Salzberg, Steven L

Publication type:

Article

PrimedRPA: primer design for recombinase polymerase amplification assays.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 682, doi. 10.1093/bioinformatics/bty701

By:

Higgins, Matthew;
Ravenhall, Matt;
Ward, Daniel;
Phelan, Jody;
Ibrahim, Amy;
Campino, Susana;
Forrest, Matthew S;
Clark, Taane G

Publication type:

Article

HOGMMNC: a higher order graph matching with multiple network constraints model for gene–drug regulatory modules identification.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 602, doi. 10.1093/bioinformatics/bty662

By:

Chen, Jiazhou;
Cai, Hongmin;
Peng, Hong;
Han, Guoqiang;
Cai, Jiulun

Publication type:

Article

On the problem of confounders in modeling gene expression.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 711, doi. 10.1093/bioinformatics/bty674

By:

Schmidt, Florian;
Schulz, Marcel H

Publication type:

Article

Linkage disequilibrium maps to guide contig ordering for genome assembly.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 541, doi. 10.1093/bioinformatics/bty687

By:

Pengelly, Reuben J;
Collins, Andrew

Publication type:

Article

Quantifying the notions of canalizing and master genes in a gene regulatory network—a Boolean network modeling perspective.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 643, doi. 10.1093/bioinformatics/bty665

By:

Kim, Eunji;
Dougherty, Edward R;
Ivanov, Ivan

Publication type:

Article

KEDDY: a knowledge-based statistical gene set test method to detect differential functional protein–protein interactions.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 619, doi. 10.1093/bioinformatics/bty686

By:

Jung, Sungwon

Publication type:

Article

Quantifying heterogeneity of expression data based on principal components.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 553, doi. 10.1093/bioinformatics/bty671

By:

Yang, Zi;
Michailidis, George

Publication type:

Article

JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 546, doi. 10.1093/bioinformatics/bty669

By:

Miller, Justin B;
Pickett, Brandon D;
Ridge, Perry G

Publication type:

Article

PredMP: a web server for de novo prediction and visualization of membrane proteins.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 691, doi. 10.1093/bioinformatics/bty684

By:

Wang, Sheng;
Li, Yu;
Gao, Xin;
Fei, Shiyang;
Wang, Zongan;
Xu, Jinbo;
Zhao, Feng

Publication type:

Article

powerful conditional gene-based association approach implicated functionally important genes for schizophrenia.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 628, doi. 10.1093/bioinformatics/bty682

By:

Li, Miaoxin;
Sham, Pak Chung;
Jiang, Lin;
Mak, Timothy Shin Heng;
Kwan, Johnny Sheung Him;
Xue, Chao;
Chen, Peikai;
Leung, Henry Chi-Ming;
Cui, Liqian;
Li, Tao

Publication type:

Article

GPseudoRank: a permutation sampler for single cell orderings.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 611, doi. 10.1093/bioinformatics/bty664

By:

Strauß, Magdalena E;
Wernisch, Lorenz;
Reid, John E

Publication type:

Article

MR4Cancer: a web server prioritizing master regulators for cancer.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 636, doi. 10.1093/bioinformatics/bty658

By:

Ru, Beibei;
Tong, Yin;
Zhang, Jiangwen

Publication type:

Article

LipidIMMS Analyzer: integrating multi-dimensional information to support lipid identification in ion mobility—mass spectrometry based lipidomics.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 698, doi. 10.1093/bioinformatics/bty661

By:

Zhou, Zhiwei;
Shen, Xiaotao;
Chen, Xi;
Tu, Jia;
Xiong, Xin;
Zhu, Zheng-Jiang

Publication type:

Article

LipidFinder on LIPID MAPS: peak filtering, MS searching and statistical analysis for lipidomics.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 685, doi. 10.1093/bioinformatics/bty679

By:

Fahy, Eoin;
Alvarez-Jarreta, Jorge;
Brasher, Christopher J;
Hawksworth, Jade I;
Rodrigues, Patricia;
Meckelmann, Sven;
O'Donnell, Valerie B;
Nguyen, An;
Allen, Stuart M

Publication type:

Article

GlycanAnalyzer: software for automated interpretation of N -glycan profiles after exoglycosidase digestions.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 688, doi. 10.1093/bioinformatics/bty681

By:

Walsh, Ian;
Nguyen-Khuong, Terry;
Wongtrakul-Kish, Katherine;
Tay, Shi Jie;
Chew, Daniel;
Rudd, Pauline M;
José, Tasha;
Taron, Christopher H

Publication type:

Article

Global importance of RNA secondary structures in protein-coding sequences.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 579, doi. 10.1093/bioinformatics/bty678

By:

Fricke, Markus;
Ibrahim, Bashar;
Gerst, Ruman;
Niepmann, Michael;
Marz, Manja

Publication type:

Article

Genetic Simulation Resources and the GSR Certification Program.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 709, doi. 10.1093/bioinformatics/bty666

By:

Peng, Bo;
Leong, Man Chong;
Chen, Huann-Sheng;
Rotunno, Melissa;
Brignole, Katy R;
Mechanic, Leah E;
Clarke, John

Publication type:

Article

framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 584, doi. 10.1093/bioinformatics/bty663

By:

Masutani, Bansho;
Morishita, Shinichi

Publication type:

Article

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 560, doi. 10.1093/bioinformatics/bty675

By:

Peters, Timothy J;
Pidsley, Ruth;
Nair, Shalima;
Qu, Wenjia;
Song, Jenny;
Giles, Katherine A;
Statham, Aaron L;
French, Hugh J;
Bradford, Stephen T;
Stirzaker, Clare;
Clark, Susan J;
Varinli, Hilal;
Speirs, Helen;
Speed, Terence P

Publication type:

Article

epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 674, doi. 10.1093/bioinformatics/bty655

By:

Laperle, Jonathan;
Hébert-Deschamps, Simon;
Raby, Joanny;
Bastin, Charlotte;
Robert, Marc-Antoine;
Nadeau, Jean-François;
Harel, Marie;
Nordell-Markovits, Alexei;
Morais, David A de Lima;
Barrette, Michel;
Veilleux, Alain;
Bujold, David;
Bourque, Guillaume;
Jacques, Pierre-Étienne

Publication type:

Article

DoRes within CellMissy: dose-response analysis on cell migration and related data.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 696, doi. 10.1093/bioinformatics/bty634

By:

Sergeant, Gwendolien;
Martens, Lennart;
Masuzzo, Paola;
Troys, Marleen Van

Publication type:

Article

DiscoverSL: an R package for multi-omic data driven prediction of synthetic lethality in cancers.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 701, doi. 10.1093/bioinformatics/bty673

By:

Das, Shaoli;
Deng, Xiang;
Camphausen, Kevin;
Shankavaram, Uma

Publication type:

Article

Detection of de novo copy number deletions from targeted sequencing of trios.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 571, doi. 10.1093/bioinformatics/bty677

By:

Fu, Jack M;
Ruczinski, Ingo;
Leslie, Elizabeth J;
Scott, Alan F;
Murray, Jeffrey C;
Marazita, Mary L;
Beaty, Terri H;
Scharpf, Robert B

Publication type:

Article

copMEM: finding maximal exact matches via sampling both genomes.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 677, doi. 10.1093/bioinformatics/bty670

By:

Grabowski, Szymon;
Bieniecki, Wojciech

Publication type:

Article

CIRCOAST: a statistical hypothesis test for cellular colocalization with network structures.

Published in:

2019

By:

Corliss, Bruce A;
Ray, H Clifton;
Patrie, James T;
Mansour, Jennifer;
Kesting, Sam;
Park, Janice H;
Rohde, Gustavo;
Yates, Paul A;
Janes, Kevin A;
Peirce, Shayn M

Publication type:

Correction Notice

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 694, doi. 10.1093/bioinformatics/bty685

By:

Kurcinski, Mateusz;
Kuriata, Aleksander;
Kolinski, Andrzej;
Kmiecik, Sebastian;
Oleniecki, Tymoteusz;
Ciemny, Maciej Pawel

Publication type:

Article

BinDash, software for fast genome distance estimation on a typical personal laptop.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 671, doi. 10.1093/bioinformatics/bty651

By:

Zhao, XiaoFei

Publication type:

Article

Automated workflow composition in mass spectrometry-based proteomics.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 656, doi. 10.1093/bioinformatics/bty646

By:

Palmblad, Magnus;
Lamprecht, Anna-Lena;
Ison, Jon;
Schwämmle, Veit

Publication type:

Article

4mCPred: machine learning methods for DNA N 4 -methylcytosine sites prediction.

Published in:

Bioinformatics, 2019, v. 35, n. 4, p. 593, doi. 10.1093/bioinformatics/bty668

By:

He, Wenying;
Zou, Quan;
Jia, Cangzhi

Publication type:

Article