Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 3

Results: 28

TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 518, doi. 10.1093/bioinformatics/bty625

By:

Tang, Haiming;
Thomas, Paul D;
Finn, Robert D

Publication type:

Article

Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 415, doi. 10.1093/bioinformatics/bty641

By:

Sun, Chen;
Medvedev, Paul

Publication type:

Article

Systematic discovery of novel and valuable plant gene modules by large-scale RNA-seq samples.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 361, doi. 10.1093/bioinformatics/bty642

By:

Yu, Hua;
Jiao, Bingke;
Liang, Chengzhi;
Lu, Lu

Publication type:

Article

StackDPPred: a stacking based prediction of DNA-binding protein from sequence.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 433, doi. 10.1093/bioinformatics/bty653

By:

Mishra, Avdesh;
Pokhrel, Pujan;
Hoque, Md Tamjidul

Publication type:

Article

SMSSVD: SubMatrix Selection Singular Value Decomposition.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 478, doi. 10.1093/bioinformatics/bty566

By:

Henningsson, Rasmus;
Fontes, Magnus

Publication type:

Article

SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 462, doi. 10.1093/bioinformatics/bty635

By:

Jankauskaitė, Justina;
Dapkūnas, Justas;
Jiménez-García, Brian;
Fernández-Recio, Juan;
Moal, Iain H

Publication type:

Article

Simulating Illumina metagenomic data with InSilicoSeq.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 521, doi. 10.1093/bioinformatics/bty630

By:

Gourlé, Hadrien;
Hayer, Juliette;
Bongcam-Rudloff, Erik;
Karlsson-Lindsjö, Oskar

Publication type:

Article

Scaling read aligners to hundreds of threads on general-purpose processors.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 421, doi. 10.1093/bioinformatics/bty648

By:

Langmead, Ben;
Wilks, Christopher;
Antonescu, Valentin;
Charles, Rone

Publication type:

Article

Re-identification of individuals in genomic data-sharing beacons via allele inference.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 365, doi. 10.1093/bioinformatics/bty643

By:

Thenen, Nora von;
Ayday, Erman;
Cicek, A Ercument

Publication type:

Article

Random walk with restart on multiplex and heterogeneous biological networks.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 497, doi. 10.1093/bioinformatics/bty637

By:

Valdeolivas, Alberto;
Tichit, Laurent;
Remy, Elisabeth;
Baudot, Anaïs;
Navarro, Claire;
Perrin, Sophie;
Odelin, Gaëlle;
Cau, Pierre;
Levy, Nicolas

Publication type:

Article

polymapR—linkage analysis and genetic map construction from F 1 populations of outcrossing polyploids.

Published in:

2019

By:

Bourke, Peter M;
Geest, Geert van;
Voorrips, Roeland E;
Jansen, Johannes;
Kranenburg, Twan;
Shahin, Arwa;
Visser, Richard G F;
Arens, Paul;
Smulders, Marinus J M;
Maliepaard, Chris

Publication type:

Correction Notice

pLoc_bal-mAnimal: predict subcellular localization of animal proteins by balancing training dataset and PseAAC.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 398, doi. 10.1093/bioinformatics/bty628

By:

Cheng, Xiang;
Xiao, Xuan;
Lin, Wei-Zhong;
Chou, Kuo-Chen

Publication type:

Article

parallel computational framework for ultra-large-scale sequence clustering analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 380, doi. 10.1093/bioinformatics/bty617

By:

Zheng, Wei;
Mao, Qi;
Genco, Robert J;
Wactawski-Wende, Jean;
Buck, Michael;
Cai, Yunpeng;
Sun, Yijun

Publication type:

Article

MoDentify : phenotype-driven module identification in metabolomics networks at different resolutions.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 532, doi. 10.1093/bioinformatics/bty650

By:

Do, Kieu Trinh;
Rasp, David J N -P;
Kastenmüller, Gabi;
Suhre, Karsten;
Krumsiek, Jan

Publication type:

Article

MinIONQC: fast and simple quality control for MinION sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 523, doi. 10.1093/bioinformatics/bty654

By:

Lanfear, R;
Schalamun, M;
Kainer, D;
Wang, W;
Schwessinger, B

Publication type:

Article

MendelProb: probability and sample size calculations for Mendelian studies of exome and whole genome sequence data.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 529, doi. 10.1093/bioinformatics/bty542

By:

He, Zongxiao;
Leal, Suzanne M;
Wang, Lu;
DeWan, Andrew T

Publication type:

Article

MAVIS: merging, annotation, validation, and illustration of structural variants.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 515, doi. 10.1093/bioinformatics/bty621

By:

Reisle, Caralyn;
Mungall, Karen L;
Choo, Caleb;
Paulino, Daniel;
Bleile, Dustin W;
Muhammadzadeh, Amir;
Mungall, Andrew J;
Moore, Richard A;
Shlafman, Inna;
Coope, Robin;
Pleasance, Stephen;
Ma, Yussanne;
Jones, Steven J M

Publication type:

Article

Kinome-wide identification of phosphorylation networks in eukaryotic proteomes.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 372, doi. 10.1093/bioinformatics/bty545

By:

Parca, Luca;
Ariano, Bruno;
Cabibbo, Andrea;
Paoletti, Marco;
Tamburrini, Annalaura;
Palmeri, Antonio;
Ausiello, Gabriele;
Helmer-Citterich, Manuela

Publication type:

Article

iSwathX: an interactive web-based application for extension of DIA peptide reference libraries.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 538, doi. 10.1093/bioinformatics/bty660

By:

Noor, Zainab;
Mohamedali, Abidali;
Ranganathan, Shoba;
Wu, Jemma X;
Pascovici, Dana;
Molloy, Mark P;
Baker, Mark S

Publication type:

Article

Heritability estimation and differential analysis of count data with generalized linear mixed models in genomic sequencing studies.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 487, doi. 10.1093/bioinformatics/bty644

By:

Sun, Shiquan;
Zhu, Jiaqiang;
Mozaffari, Sahar;
Ober, Carole;
Chen, Mengjie;
Zhou, Xiang

Publication type:

Article

gMCS : fast computation of genetic minimal cut sets in large networks.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 535, doi. 10.1093/bioinformatics/bty656

By:

Apaolaza, Iñigo;
Planes, Francisco J;
Valcarcel, Luis Vitores

Publication type:

Article

Effusion: prediction of protein function from sequence similarity networks.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 442, doi. 10.1093/bioinformatics/bty672

By:

Yunes, Jeffrey M;
Babbitt, Patricia C

Publication type:

Article

Dynamic compression schemes for graph coloring.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 407, doi. 10.1093/bioinformatics/bty632

By:

Mustafa, Harun;
Karasikov, Mikhail;
Rätsch, Gunnar;
Kahles, André;
Schilken, Ingo;
Eickhoff, Carsten

Publication type:

Article

DMCM: a Data-adaptive Mutation Clustering Method to identify cancer-related mutation clusters.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 389, doi. 10.1093/bioinformatics/bty624

By:

Lu, Xinguo;
Qian, Xin;
Li, Xing;
Miao, Qiumai;
Peng, Shaoliang

Publication type:

Article

CIRCOAST: a statistical hypothesis test for cellular colocalization with network structures.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 506, doi. 10.1093/bioinformatics/bty638

By:

Corliss, Bruce A;
Ray, H Clifton;
Kesting, Sam;
Rohde, Gustavo;
Janes, Kevin A;
Peirce, Shayn M;
Patrie, James T;
Mansour, Jennifer;
Park, Janice H;
Yates, Paul A

Publication type:

Article

BIPSPI: a method for the prediction of partner-specific protein–protein interfaces.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 470, doi. 10.1093/bioinformatics/bty647

By:

Sanchez-Garcia, Ruben;
Sorzano, C O S;
Carazo, J M;
Segura, Joan

Publication type:

Article

Automatic recognition of ligands in electron density by machine learning.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 452, doi. 10.1093/bioinformatics/bty626

By:

Kowiel, Marcin;
Brzezinski, Dariusz;
Porebski, Przemyslaw J;
Shabalin, Ivan G;
Minor, Wladek;
Jaskolski, Mariusz

Publication type:

Article

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R.

Published in:

Bioinformatics, 2019, v. 35, n. 3, p. 526, doi. 10.1093/bioinformatics/bty633

By:

Paradis, Emmanuel;
Schliep, Klaus

Publication type:

Article