Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 20

Results: 52

relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4205, doi. 10.1093/bioinformatics/btz397

By:

Morin, Sébastien;
Linnet, Troels E;
Lescanne, Mathilde;
Schanda, Paul;
Thompson, Gary S;
Tollinger, Martin;
Teilum, Kaare;
Gagné, Stéphane;
Marion, Dominique;
Griesinger, Christian;
Blackledge, Martin;
d'Auvergne, Edward J

Publication type:

Article

Developing structural profile matrices for protein secondary structure and solvent accessibility prediction.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4004, doi. 10.1093/bioinformatics/btz238

By:

Aydin, Zafer;
Azginoglu, Nuh;
Bilgin, Halil Ibrahim;
Celik, Mete

Publication type:

Article

Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3923, doi. 10.1093/bioinformatics/btz237

By:

Soylev, Arda;
Le, Thong Minh;
Amini, Hajar;
Alkan, Can;
Hormozdiari, Fereydoun

Publication type:

Article

Sub-dominant principal components inform new vaccine targets for HIV Gag.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3884, doi. 10.1093/bioinformatics/btz524

By:

Ahmed, Syed Faraz;
Quadeer, Ahmed A;
Morales-Jimenez, David;
McKay, Matthew R

Publication type:

Article

Corrigendum to: A new cis-acting regulatory element driving gene expression in the zebrafish pineal gland.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4206, doi. 10.1093/bioinformatics/btz410

By:

Alon, Shahar;
Eisenberg, Eli;
Jacob-Hirsch, Jasmine;
Rechavi, Gideon;
Vatine, Gad;
Toyama, Reiko;
Coon, Steven L;
Klein, David C;
Gothilf, Yoav

Publication type:

Article

EPIP: a novel approach for condition-specific enhancer–promoter interaction prediction.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3877, doi. 10.1093/bioinformatics/btz641

By:

Talukder, Amlan;
Saadat, Samaneh;
Li, Xiaoman;
Hu, Haiyan

Publication type:

Article

Protein multiple alignments: sequence-based versus structure-based programs.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3970, doi. 10.1093/bioinformatics/btz236

By:

Carpentier, Mathilde;
Chomilier, Jacques

Publication type:

Article

Simultaneous clustering of multiview biomedical data using manifold optimization.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4029, doi. 10.1093/bioinformatics/btz217

By:

Yu, Yun;
Zhang, Lei-Hong;
Zhang, Shuqin

Publication type:

Article

SPRINT-Gly: predicting N- and O-linked glycosylation sites of human and mouse proteins by using sequence and predicted structural properties.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4140, doi. 10.1093/bioinformatics/btz215

By:

Taherzadeh, Ghazaleh;
Dehzangi, Abdollah;
Golchin, Maryam;
Zhou, Yaoqi;
Campbell, Matthew P

Publication type:

Article

PedigreeNet: a web-based pedigree viewer for biological databases.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4184, doi. 10.1093/bioinformatics/btz208

By:

Braun, Bremen L;
Schott, David A;
Portwood, John L;
Andorf, Carson M;
Sen, Taner Z

Publication type:

Article

Differential proteostatic regulation of insoluble and abundant proteins.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4098, doi. 10.1093/bioinformatics/btz214

By:

Ramakrishnan, Reshmi;
Houben, Bert;
Rousseau, Frederic;
Schymkowitz, Joost

Publication type:

Article

ORE identifies extreme expression effects enriched for rare variants.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3906, doi. 10.1093/bioinformatics/btz202

By:

Richter, F;
Hoffman, G E;
Manheimer, K B;
Patel, N;
Sharp, A J;
McKean, D;
Morton, S U;
DePalma, S;
Gorham, J;
Kitaygorodksy, A;
Porter, G A;
Giardini, A;
Shen, Y;
Chung, W K;
Seidman, J G;
Seidman, C E;
Schadt, E E;
Gelb, B D

Publication type:

Article

PgpRules: a decision tree based prediction server for P-glycoprotein substrates and inhibitors.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4193, doi. 10.1093/bioinformatics/btz213

By:

Wang, Pei-Hua;
Tu, Yi-Shu;
Tseng, Yufeng J

Publication type:

Article

TISIDB: an integrated repository portal for tumor–immune system interactions.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4200, doi. 10.1093/bioinformatics/btz210

By:

Ru, Beibei;
Wong, Ching Ngar;
Tong, Yin;
Zhong, Jia Yi;
Zhong, Sophia Shek Wa;
Wu, Wai Chung;
Chu, Ka Chi;
Wong, Choi Yiu;
Lau, Chit Ying;
Chen, Ian;
Chan, Nam Wai;
Zhang, Jiangwen

Publication type:

Article

CliqueMS: a computational tool for annotating in-source metabolite ions from LC-MS untargeted metabolomics data based on a coelution similarity network.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4089, doi. 10.1093/bioinformatics/btz207

By:

Senan, Oriol;
Aguilar-Mogas, Antoni;
Navarro, Miriam;
Capellades, Jordi;
Noon, Luke;
Burks, Deborah;
Yanes, Oscar;
Guimerà, Roger;
Sales-Pardo, Marta

Publication type:

Article

ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelization.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3961, doi. 10.1093/bioinformatics/btz211

By:

Yin, John;
Zhang, Chao;
Mirarab, Siavash

Publication type:

Article

CytoBackBone: an algorithm for merging of phenotypic information from different cytometric profiles.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4187, doi. 10.1093/bioinformatics/btz212

By:

Pereira, Adrien Leite;
Lambotte, Olivier;
Grand, Roger Le;
Cosma, Antonio;
Tchitchek, Nicolas

Publication type:

Article

ERVcaller: identifying polymorphic endogenous retrovirus and other transposable element insertions using whole-genome sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3913, doi. 10.1093/bioinformatics/btz205

By:

Chen, Xun;
Li, Dawei

Publication type:

Article

maTE: discovering expressed interactions between microRNAs and their targets.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4020, doi. 10.1093/bioinformatics/btz204

By:

Yousef, Malik;
Abdallah, Loai;
Allmer, Jens

Publication type:

Article

Pinetree: a step-wise gene expression simulator with codon-specific translation rates.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4176, doi. 10.1093/bioinformatics/btz203

By:

Jack, Benjamin R;
Wilke, Claus O

Publication type:

Article

Neural networks with circular filters enable data efficient inference of sequence motifs.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3937, doi. 10.1093/bioinformatics/btz194

By:

Blum, Christopher F;
Kollmann, Markus

Publication type:

Article

FLAS: fast and high-throughput algorithm for PacBio long-read self-correction.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3953, doi. 10.1093/bioinformatics/btz206

By:

Bao, Ergude;
Xie, Fei;
Song, Changjin;
Song, Dandan

Publication type:

Article

ScanNeo: identifying indel-derived neoantigens using RNA-Seq data.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4159, doi. 10.1093/bioinformatics/btz193

By:

Wang, Ting-You;
Wang, Li;
Alam, Sk Kayum;
Hoeppner, Luke H;
Yang, Rendong

Publication type:

Article

Enhanced Waddington landscape model with cell–cell communication can explain molecular mechanisms of self-organization.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4081, doi. 10.1093/bioinformatics/btz201

By:

Fooladi, Hosein;
Moradi, Parsa;
Sharifi-Zarchi, Ali;
Khalaj, Babak Hosein

Publication type:

Article

SArKS: de novo discovery of gene expression regulatory motif sites and domains by suffix array kernel smoothing.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3944, doi. 10.1093/bioinformatics/btz198

By:

Wylie, Dennis C;
Hofmann, Hans A;
Zemelman, Boris V

Publication type:

Article

Dissecting differential signals in high-throughput data from complex tissues.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3898, doi. 10.1093/bioinformatics/btz196

By:

Li, Ziyi;
Wu, Zhijin;
Jin, Peng;
Wu, Hao

Publication type:

Article

Health assistant: answering your questions anytime from biomedical literature.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4129, doi. 10.1093/bioinformatics/btz195

By:

Jin, Zan-Xia;
Zhang, Bo-Wen;
Fang, Fan;
Zhang, Le-Le;
Yin, Xu-Cheng

Publication type:

Article

Simulation-assisted machine learning.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4072, doi. 10.1093/bioinformatics/btz199

By:

Deist, Timo M;
Patti, Andrew;
Wang, Zhaoqi;
Krane, David;
Sorenson, Taylor;
Craft, David

Publication type:

Article

Modelling G × E with historical weather information improves genomic prediction in new environments.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4045, doi. 10.1093/bioinformatics/btz197

By:

Gillberg, Jussi;
Marttinen, Pekka;
Mamitsuka, Hiroshi;
Kaski, Samuel

Publication type:

Article

Compressed filesystem for managing large genome collections.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4120, doi. 10.1093/bioinformatics/btz192

By:

Navarro, Gonzalo;
Sepúlveda, Víctor;
Marín, Mauricio;
González, Senén

Publication type:

Article

onlineFDR: an R package to control the false discovery rate for growing data repositories.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4196, doi. 10.1093/bioinformatics/btz191

By:

Robertson, David S;
Wildenhain, Jan;
Javanmard, Adel;
Karp, Natasha A

Publication type:

Article

BrAPI—an application programming interface for plant breeding applications.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4147, doi. 10.1093/bioinformatics/btz190

By:

Selby, Peter;
Abbeloos, Rafael;
Backlund, Jan Erik;
Salido, Martin Basterrechea;
Bauchet, Guillaume;
Benites-Alfaro, Omar E;
Birkett, Clay;
Calaminos, Viana C;
Carceller, Pierre;
Cornut, Guillaume;
Costa, Bruno Vasques;
Edwards, Jeremy D;
Finkers, Richard;
Gao, Star Yanxin;
Ghaffar, Mehmood;
Glaser, Philip;
Guignon, Valentin;
Hok, Puthick;
Kilian, Andrzej;
König, Patrick

Publication type:

Article

Significance tests for analyzing gene expression data with small sample sizes.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3996, doi. 10.1093/bioinformatics/btz189

By:

Ullah, Insha;
Paul, Sudhir;
Hong, Zhenjie;
Wang, You-Gan

Publication type:

Article

GToTree: a user-friendly workflow for phylogenomics.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4162, doi. 10.1093/bioinformatics/btz188

By:

Lee, Michael D

Publication type:

Article

CABS-dock standalone: a toolbox for flexible protein–peptide docking.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4170, doi. 10.1093/bioinformatics/btz185

By:

Kurcinski, Mateusz;
Ciemny, Maciej Pawel;
Oleniecki, Tymoteusz;
Kuriata, Aleksander;
Badaczewska-Dawid, Aleksandra E;
Kolinski, Andrzej;
Kmiecik, Sebastian

Publication type:

Article

Classical scoring functions for docking are unable to exploit large volumes of structural and interaction data.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3989, doi. 10.1093/bioinformatics/btz183

By:

Li, Hongjian;
Peng, Jiangjun;
Sidorov, Pavel;
Leung, Yee;
Leung, Kwong-Sak;
Wong, Man-Hon;
Lu, Gang;
Ballester, Pedro J

Publication type:

Article

GladiaTOX: GLobal Assessment of Dose-IndicAtor in TOXicology.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4190, doi. 10.1093/bioinformatics/btz187

By:

Belcastro, Vincenzo;
Cano, Stephane;
Marescotti, Diego;
Acali, Stefano;
Poussin, Carine;
Gonzalez-Suarez, Ignacio;
Martin, Florian;
Bonjour, Filipe;
Ivanov, Nikolai V;
Peitsch, Manuel C;
Hoeng, Julia

Publication type:

Article

Lemon: a framework for rapidly mining structural information from the Protein Data Bank.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4165, doi. 10.1093/bioinformatics/btz178

By:

Fine, Jonathan;
Chopra, Gaurav

Publication type:

Article

PleioNet: a web-based visualization tool for exploring pleiotropy across complex traits.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4179, doi. 10.1093/bioinformatics/btz179

By:

Gao, X Raymond;
Huang, Hua

Publication type:

Article

CyTOFmerge: integrating mass cytometry data across multiple panels.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4063, doi. 10.1093/bioinformatics/btz180

By:

Abdelaal, Tamim;
Höllt, Thomas;
Unen, Vincent van;
Lelieveldt, Boudewijn P F;
Koning, Frits;
Reinders, Marcel J T;
Mahfouz, Ahmed

Publication type:

Article

ECOGEMS: efficient compression and retrieve of SNP data of 2058 rice accessions with integer sparse matrices.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4181, doi. 10.1093/bioinformatics/btz186

By:

Yao, Wen;
Huang, Fangfang;
Zhang, Xuehai;
Tang, Jihua

Publication type:

Article

Probabilistic count matrix factorization for single cell expression data analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4011, doi. 10.1093/bioinformatics/btz177

By:

Durif, Ghislain;
Modolo, Laurent;
Mold, Jeff E;
Lambert-Lacroix, Sophie;
Picard, Franck

Publication type:

Article

FoldX 5.0: working with RNA, small molecules and a new graphical interface.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4168, doi. 10.1093/bioinformatics/btz184

By:

Delgado, Javier;
Radusky, Leandro G;
Cianferoni, Damiano;
Serrano, Luis

Publication type:

Article

SummaryAUC: a tool for evaluating the performance of polygenic risk prediction models in validation datasets with only summary level statistics.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4038, doi. 10.1093/bioinformatics/btz176

By:

Song, Lei;
Liu, Aiyi;
Shi, Jianxin;
Consortium, Molecular Genetics of Schizophrenia

Publication type:

Article

Drug repositioning through integration of prior knowledge and projections of drugs and diseases.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4108, doi. 10.1093/bioinformatics/btz182

By:

Xuan, Ping;
Cao, Yangkun;
Zhang, Tiangang;
Wang, Xiao;
Pan, Shuxiang;
Shen, Tonghui

Publication type:

Article

SCL: a lattice-based approach to infer 3D chromosome structures from single-cell Hi-C data.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3981, doi. 10.1093/bioinformatics/btz181

By:

Zhu, Hao;
Wang, Zheng

Publication type:

Article

SodaPop: a forward simulation suite for the evolutionary dynamics of asexual populations on protein fitness landscapes.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4053, doi. 10.1093/bioinformatics/btz175

By:

Gauthier, Louis;
Franco, Rémicia Di;
Serohijos, Adrian W R

Publication type:

Article

Multiresolution correction of GC bias and application to identification of copy number alterations.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3890, doi. 10.1093/bioinformatics/btz174

By:

Jang, Ho;
Lee, Hyunju

Publication type:

Article

Stable H3K4me3 is associated with transcription initiation during early embryo development.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3931, doi. 10.1093/bioinformatics/btz173

By:

Huang, Xin;
Gao, Xudong;
Li, Wanying;
Jiang, Shuai;
Li, Ruijiang;
Hong, Hao;
Zhao, Chenghui;
Zhou, Pingkun;
Chen, Hebing;
Bo, Xiaochen;
Li, Hao

Publication type:

Article

Holistic optimization of an RNA-seq workflow for multi-threaded environments.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 4173, doi. 10.1093/bioinformatics/btz169

By:

Hung, Ling-Hong;
Lloyd, Wes;
Sridhar, Radhika Agumbe;
Ravishankar, Saranya Devi Athmalingam;
Xiong, Yuguang;
Sobie, Eric;
Yeung, Ka Yee

Publication type:

Article