Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 15

Results: 33

Computing irreversible minimal cut sets in genome-scale metabolic networks via flux cone projection.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2618, doi. 10.1093/bioinformatics/bty1027

By:

Röhl, Annika;
Riou, Tanguy;
Bockmayr, Alexander

Publication type:

Article

Commonly misunderstood parameters of NCBI BLAST and important considerations for users.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2697, doi. 10.1093/bioinformatics/bty1018

By:

González-Pech, Raúl A;
Stephens, Timothy G;
Chan, Cheong Xin

Publication type:

Article

Comment on: 'Empirical comparison of web-based antimicrobial peptide prediction tools'.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2692, doi. 10.1093/bioinformatics/bty1023

By:

Vishnepolsky, Boris;
Pirtskhalava, Malak

Publication type:

Article

CNValidator: validating somatic copy-number inference.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2660, doi. 10.1093/bioinformatics/bty1022

By:

Smith, Lucian P;
Yamato, Jon A;
Kuhner, Mary K

Publication type:

Article

CASMAP: detection of statistically significant combinations of SNPs in association mapping.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2680, doi. 10.1093/bioinformatics/bty1020

By:

Llinares-López, Felipe;
Papaxanthos, Laetitia;
Roqueiro, Damian;
Bodenham, Dean;
Borgwardt, Karsten

Publication type:

Article

atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2657, doi. 10.1093/bioinformatics/bty1010

By:

Shin, Sunyoung;
Hudson, Rebecca;
Harrison, Christopher;
Craven, Mark;
Keleş, Sündüz

Publication type:

Article

TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2686, doi. 10.1093/bioinformatics/bty998

By:

Thibodeau, Asa;
Shin, Dong-Guk

Publication type:

Article

Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2634, doi. 10.1093/bioinformatics/bty1035

By:

Alazmi, Meshari;
Kuwahara, Hiroyuki;
Soufan, Othman;
Ding, Lizhong;
Gao, Xin

Publication type:

Article

Systematic characterization and prediction of post-translational modification cross-talk between proteins.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2626, doi. 10.1093/bioinformatics/bty1033

By:

Huang, Rongting;
Huang, Yuanhua;
Guo, Yubin;
Ji, Shangwei;
Lu, Ming;
Li, Tingting

Publication type:

Article

SPRING: a next-generation compressor for FASTQ data.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2674, doi. 10.1093/bioinformatics/bty1015

By:

Chandak, Shubham;
Tatwawadi, Kedar;
Ochoa, Idoia;
Hernaez, Mikel;
Weissman, Tsachy

Publication type:

Article

AStrap: identification of alternative splicing from transcript sequences without a reference genome.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2654, doi. 10.1093/bioinformatics/bty1008

By:

Ji, Guoli;
Ye, Wenbin;
Su, Yaru;
Chen, Moliang;
Huang, Guangzao;
Wu, Xiaohui

Publication type:

Article

Response to comments on 'Empirical comparison of web-based antimicrobial peptide prediction tools'.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2695, doi. 10.1093/bioinformatics/bty1024

By:

Gabere, Musa Nur

Publication type:

Article

Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2699, doi. 10.1093/bioinformatics/bty1026

By:

Madden, Thomas L;
Busby, Ben;
Ye, Jian

Publication type:

Article

poreTally: run and publish de novo nanopore assembler benchmarks.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2663, doi. 10.1093/bioinformatics/bty1045

By:

Lannoy, Carlos de;
Risse, Judith;
Ridder, Dick de

Publication type:

Article

PconsC4: fast, accurate and hassle-free contact predictions.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2677, doi. 10.1093/bioinformatics/bty1036

By:

Michel, Mirco;
Hurtado, David Menéndez;
Elofsson, Arne

Publication type:

Article

On what to permute in test-based approaches for variable importance measures in Random Forests.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2701, doi. 10.1093/bioinformatics/bty1025

By:

Nembrini, Stefano

Publication type:

Article

Increasing the accuracy of protein loop structure prediction with evolutionary constraints.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2585, doi. 10.1093/bioinformatics/bty996

By:

Marks, Claire;
Deane, Charlotte M

Publication type:

Article

DeepIsoFun: a deep domain adaptation approach to predict isoform functions.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2535, doi. 10.1093/bioinformatics/bty1017

By:

Shaw, Dipan;
Chen, Hao;
Jiang, Tao

Publication type:

Article

Deciphering the complexity of human non-coding promoter-proximal transcriptome.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2529, doi. 10.1093/bioinformatics/bty981

By:

Mapelli, Sarah N;
Napoli, Sara;
Pisignano, Giuseppina;
Garcia-Escudero, Ramon;
Carbone, Giuseppina M;
Catapano, Carlo V

Publication type:

Article

Pathogen–Host Analysis Tool (PHAT): an integrative platform to analyze next-generation sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2665, doi. 10.1093/bioinformatics/bty1003

By:

Gibb, Christopher M;
Jackson, Robert;
Mohammed, Sabah;
Fiaidhi, Jinan;
Zehbe, Ingeborg

Publication type:

Article

Optimal Gene Filtering for Single-Cell data (OGFSC)—a gene filtering algorithm for single-cell RNA-seq data.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2602, doi. 10.1093/bioinformatics/bty1016

By:

Hao, Jie;
Cao, Wei;
Huang, Jian;
Zou, Xin;
Han, Ze-Guang

Publication type:

Article

MapOptics: a light-weight, cross-platform visualization tool for optical mapping alignment.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2671, doi. 10.1093/bioinformatics/bty1013

By:

Burgin, Josephine;
Molitor, Corentin;
Mohareb, Fady

Publication type:

Article

ModL: exploring and restoring regularity when testing for positive selection.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2545, doi. 10.1093/bioinformatics/bty1019

By:

Mingrone, Joseph;
Susko, Edward;
Bielawski, Joseph P

Publication type:

Article

KinVis: a visualization tool to detect cryptic relatedness in genetic datasets.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2683, doi. 10.1093/bioinformatics/bty1028

By:

Ullah, Ehsan;
Aupetit, Michaël;
Das, Arun;
Patil, Abhishek;
Muftah, Noora Al;
Rawi, Reda;
Saad, Mohamad;
Bensmail, Halima

Publication type:

Article

Very low-depth whole-genome sequencing in complex trait association studies.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2555, doi. 10.1093/bioinformatics/bty1032

By:

Gilly, Arthur;
Southam, Lorraine;
Suveges, Daniel;
Kuchenbaecker, Karoline;
Moore, Rachel;
Melloni, Giorgio E M;
Hatzikotoulas, Konstantinos;
Farmaki, Aliki-Eleni;
Ritchie, Graham;
Schwartzentruber, Jeremy;
Danecek, Petr;
Kilian, Britt;
Pollard, Martin O;
Ge, Xiangyu;
Tsafantakis, Emmanouil;
Dedoussis, George;
Zeggini, Eleftheria

Publication type:

Article

Ancestral sequence reconstruction: accounting for structural information by averaging over replacement matrices.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2562, doi. 10.1093/bioinformatics/bty1031

By:

Moshe, Asher;
Pupko, Tal

Publication type:

Article

Inter-residue interactions in alpha-helical transmembrane proteins.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2578, doi. 10.1093/bioinformatics/bty978

By:

Mayol, Eduardo;
Campillo, Mercedes;
Cordomí, Arnau;
Olivella, Mireia

Publication type:

Article

Insights on protein thermal stability: a graph representation of molecular interactions.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2569, doi. 10.1093/bioinformatics/bty1011

By:

Miotto, Mattia;
Olimpieri, Pier Paolo;
Rienzo, Lorenzo Di;
Ambrosetti, Francesco;
Corsi, Pietro;
Lepore, Rosalba;
Tartaglia, Gian Gaetano;
Milanetti, Edoardo

Publication type:

Article

Implementation of a Stirling number estimator enables direct calculation of population genetics tests for large sequence datasets.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2668, doi. 10.1093/bioinformatics/bty1012

By:

Chen, Swaine L

Publication type:

Article

Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2610, doi. 10.1093/bioinformatics/bty992

By:

Shi, Wenqiang;
Fornes, Oriol;
Wasserman, Wyeth W

Publication type:

Article

Fully unsupervised symmetry-based mitosis detection in time-lapse cell microscopy.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2644, doi. 10.1093/bioinformatics/bty1034

By:

Gilad, Topaz;
Reyes, Jose;
Chen, Jia-Yun;
Lahav, Galit;
Raviv, Tammy Riklin

Publication type:

Article

DNABarcodeCompatibility: an R-package for optimizing DNA-barcode combinations in multiplex sequencing experiments.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2690, doi. 10.1093/bioinformatics/bty1030

By:

Trébeau, Céline;
Monvel, Jacques Boutet de;
Tai, Fabienne Wong Jun;
Petit, Christine;
Etournay, Raphaël

Publication type:

Article

DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 15, p. 2593, doi. 10.1093/bioinformatics/bty1009

By:

Chen, Ziwei;
An, Shaokun;
Bai, Xiangqi;
Gong, Fuzhou;
Ma, Liang;
Wan, Lin

Publication type:

Article