Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 13

Results: 36

equivariant Bayesian convolutional network predicts recombination hotspots and accurately resolves binding motifs.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2177, doi. 10.1093/bioinformatics/bty964

By:

Brown, Richard C;
Lunter, Gerton

Publication type:

Article

DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2216, doi. 10.1093/bioinformatics/bty953

By:

Elbasir, Abdurrahman;
Moovarkumudalvan, Balasubramanian;
Kunji, Khalid;
Kolatkar, Prasanna R;
Mall, Raghvendra;
Bensmail, Halima

Publication type:

Article

BlendMol: advanced macromolecular visualization in Blender.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2323, doi. 10.1093/bioinformatics/bty968

By:

Durrant, Jacob D

Publication type:

Article

EpistasisRank and EpistasisKatz: interaction network centrality methods that integrate prior knowledge networks.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2329, doi. 10.1093/bioinformatics/bty965

By:

Parvandeh, Saeid;
McKinney, Brett A

Publication type:

Article

Genome-wide search of nucleosome patterns using visual analytics.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2185, doi. 10.1093/bioinformatics/bty971

By:

Santamaría, Rodrigo;
Therón, Roberto;
Durán, Laura;
García, Alicia;
González, Sara;
Sánchez, Mar;
Antequera, Francisco

Publication type:

Article

Integrate multiple traits to detect novel trait–gene association using GWAS summary data with an adaptive test approach.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2251, doi. 10.1093/bioinformatics/bty961

By:

Guo, Bin;
Wu, Baolin

Publication type:

Article

Computational modeling reveals MAP3K8 as mediator of resistance to vemurafenib in thyroid cancer stem cells.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2267, doi. 10.1093/bioinformatics/bty969

By:

Gianì, Fiorenza;
Russo, Giulia;
Pennisi, Marzio;
Sciacca, Laura;
Frasca, Francesco;
Pappalardo, Francesco

Publication type:

Article

GenCoF: a graphical user interface to rapidly remove human genome contaminants from metagenomic datasets.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2318, doi. 10.1093/bioinformatics/bty963

By:

Czajkowski, Matthew D;
Vance, Daniel P;
Frese, Steven A;
Casaburi, Giorgio

Publication type:

Article

PhastWeb: a web interface for evolutionary conservation scoring of multiple sequence alignments using phastCons and phyloP.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2320, doi. 10.1093/bioinformatics/bty966

By:

Ramani, Ritika;
Krumholz, Katie;
Huang, Yi-Fei;
Siepel, Adam

Publication type:

Article

DiPhiSeq: robust comparison of expression levels on RNA-Seq data with large sample sizes.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2235, doi. 10.1093/bioinformatics/bty952

By:

Li, Jun;
Lamere, Alicia T

Publication type:

Article

pyNVR: investigating factors affecting feature selection from scRNA-seq data for lineage reconstruction.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2335, doi. 10.1093/bioinformatics/bty950

By:

Chen, Bob;
Herring, Charles A;
Lau, Ken S

Publication type:

Article

GUV-AP: multifunctional FIJI-based tool for quantitative image analysis of Giant Unilamellar Vesicles.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2340, doi. 10.1093/bioinformatics/bty962

By:

Sych, Taras;
Schubert, Thomas;
Vauchelles, Romain;
Madl, Josef;
Omidvar, Ramin;
Thuenauer, Roland;
Richert, Ludovic;
Mély, Yves;
Römer, Winfried

Publication type:

Article

G4HunterApps.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2311, doi. 10.1093/bioinformatics/bty951

By:

Lacroix, Laurent

Publication type:

Article

plugin for the Ensembl Variant Effect Predictor that uses MaxEntScan to predict variant spliceogenicity.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2315, doi. 10.1093/bioinformatics/bty960

By:

Shamsani, Jannah;
Kazakoff, Stephen H;
Armean, Irina M;
McLaren, Will;
Parsons, Michael T;
Thompson, Bryony A;
O'Mara, Tracy A;
Hunt, Sarah E;
Waddell, Nicola;
Spurdle, Amanda B

Publication type:

Article

Bias in the intervention in prediction measure in random forests: illustrations and recommendations.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2343, doi. 10.1093/bioinformatics/bty959

By:

Nembrini, Stefano

Publication type:

Article

ProteomicsBrowser: MS/proteomics data visualization and investigation.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2313, doi. 10.1093/bioinformatics/bty958

By:

Peng, Gang;
Wilson, Rashaun;
Tang, Yishuo;
Lam, TuKiet T;
Nairn, Angus C;
Williams, Kenneth;
Zhao, Hongyu

Publication type:

Article

RT States: systematic annotation of the human genome using cell type-specific replication timing programs.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2167, doi. 10.1093/bioinformatics/bty957

By:

Poulet, Axel;
Li, Ben;
Dubos, Tristan;
Rivera-Mulia, Juan Carlos;
Gilbert, David M;
Qin, Zhaohui S

Publication type:

Article

SGTK: a toolkit for visualization and assessment of scaffold graphs.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2303, doi. 10.1093/bioinformatics/bty956

By:

Kunyavskaya, Olga;
Prjibelski, Andrey D

Publication type:

Article

TAIJI: approaching experimental replicates-level accuracy for drug synergy prediction.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2338, doi. 10.1093/bioinformatics/bty955

By:

Li, Hongyang;
Hu, Shuai;
Neamati, Nouri;
Guan, Yuanfang

Publication type:

Article

Application of machine learning techniques to tuberculosis drug resistance analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2276, doi. 10.1093/bioinformatics/bty949

By:

Kouchaki, Samaneh;
Yang, Yang;
Walker, Timothy M;
Walker, A Sarah;
Wilson, Daniel J;
Peto, Timothy E A;
Crook, Derrick W;
Consortium, CRyPTIC;
Clifton, David A

Publication type:

Article

circtools—a one-stop software solution for circular RNA research.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2326, doi. 10.1093/bioinformatics/bty948

By:

Jakobi, Tobias;
Uvarovskii, Alexey;
Dieterich, Christoph

Publication type:

Article

SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2283, doi. 10.1093/bioinformatics/bty947

By:

Soul, Jamie;
Hardingham, Tim E;
Boot-Handford, Ray P;
Schwartz, Jean-Marc

Publication type:

Article

Pair Matcher (PaM): fast model-based optimization of treatment/case-control matches.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2243, doi. 10.1093/bioinformatics/bty946

By:

Elhaik, Eran;
Ryan, Desmond M

Publication type:

Article

Genetic Neural Networks: an artificial neural network architecture for capturing gene expression relationships.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2226, doi. 10.1093/bioinformatics/bty945

By:

Eetemadi, Ameen;
Tagkopoulos, Ilias

Publication type:

Article

Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2332, doi. 10.1093/bioinformatics/bty941

By:

Baldini, Federico;
Heinken, Almut;
Heirendt, Laurent;
Magnusdottir, Stefania;
Fleming, Ronan M T;
Thiele, Ines

Publication type:

Article

Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2291, doi. 10.1093/bioinformatics/bty939

By:

Failmezger, Henrik;
Dursun, Ezgi;
Dümcke, Sebastian;
Endele, Max;
Poron, Don;
Schroeder, Timm;
Krug, Anne;
Tresch, Achim

Publication type:

Article

PAVOOC: designing CRISPR sgRNAs using 3D protein structures and functional domain annotations.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2309, doi. 10.1093/bioinformatics/bty935

By:

Schaefer, Moritz;
Clevert, Djork-Arné;
Weiss, Bertram;
Steffen, Andreas

Publication type:

Article

BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2306, doi. 10.1093/bioinformatics/bty930

By:

Zhang, Jikai;
Lan, Haidong;
Chan, Yuandong;
Shang, Yuan;
Schmidt, Bertil;
Liu, Weiguo

Publication type:

Article

Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2258, doi. 10.1093/bioinformatics/bty929

By:

Tran, Van Du T;
Moretti, Sébastien;
Coste, Alix T;
Amorim-Vaz, Sara;
Sanglard, Dominique;
Pagni, Marco

Publication type:

Article

Semi-supervised learning of Hidden Markov Models for biological sequence analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2208, doi. 10.1093/bioinformatics/bty910

By:

Tamposis, Ioannis A;
Tsirigos, Konstantinos D;
Theodoropoulou, Margarita C;
Kontou, Panagiota I;
Bagos, Pantelis G

Publication type:

Article

CAARS: comparative assembly and annotation of RNA-Seq data.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2199, doi. 10.1093/bioinformatics/bty903

By:

Rey, Carine;
Veber, Philippe;
Boussau, Bastien;
Sémon, Marie

Publication type:

Article

Directional allelic imbalance profiling and visualization from multi-sample data with RECUR.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2300, doi. 10.1093/bioinformatics/bty885

By:

Jakubek, Yasminka A;
Lucas, F Anthony San;
Scheet, Paul

Publication type:

Article

Batch effects correction for microbiome data with Dirichlet-multinomial regression.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2348, doi. 10.1093/bioinformatics/bty874

By:

Dai, Zhenwei;
Wong, Sunny H;
Yu, Jun;
Wei, Yingying

Publication type:

Article

Bayesian model for single cell transcript expression analysis on MERFISH data.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2347, doi. 10.1093/bioinformatics/bty857

By:

Köster, Johannes;
Brown, Myles;
Liu, X Shirley

Publication type:

Article

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2193, doi. 10.1093/bioinformatics/bty841

By:

Payne, Alexander;
Holmes, Nadine;
Rakyan, Vardhman;
Loose, Matthew

Publication type:

Article

Bayesian negative binomial regression for differential expression with confounding factors.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2346, doi. 10.1093/bioinformatics/bty808

By:

Dadaneh, Siamak Zamani;
Zhou, Mingyuan;
Qian, Xiaoning

Publication type:

Article