Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 12

Results: 27

FactorialHMM: fast and exact inference in factorial hidden Markov models.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2162, doi. 10.1093/bioinformatics/bty944

By:

Schweiger, Regev;
Erlich, Yaniv;
Carmi, Shai

Publication type:

Article

Identify origin of replication in Saccharomyces cerevisiae using two-step feature selection technique.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2075, doi. 10.1093/bioinformatics/bty943

By:

Dao, Fu-Ying;
Lv, Hao;
Wang, Fang;
Feng, Chao-Qin;
Ding, Hui;
Chen, Wei;
Lin, Hao

Publication type:

Article

Metrics for regulated biochemical pathway systems.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2118, doi. 10.1093/bioinformatics/bty942

By:

Davis, Jacob D;
Voit, Eberhard O

Publication type:

Article

SeQuiLa: an elastic, fast and scalable SQL-oriented solution for processing and querying genomic intervals.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2156, doi. 10.1093/bioinformatics/bty940

By:

Wiewiórka, Marek;
Leśniewska, Anna;
Szmurło, Agnieszka;
Stępień, Kacper;
Borowiak, Mateusz;
Okoniewski, Michał;
Gambin, Tomasz

Publication type:

Article

Pan-genomic analysis provides novel insights into the association of E.coli with human host and its minimal genome.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 1987, doi. 10.1093/bioinformatics/bty938

By:

Yang, Zhi-Kai;
Luo, Hao;
Zhang, Yanming;
Wang, Baijing;
Gao, Feng

Publication type:

Article

Identifying antimicrobial peptides using word embedding with deep recurrent neural networks.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2009, doi. 10.1093/bioinformatics/bty937

By:

Hamid, Md-Nafiz;
Friedberg, Iddo

Publication type:

Article

Index suffix–prefix overlaps by (w , k)-minimizer to generate long contigs for reads compression.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2066, doi. 10.1093/bioinformatics/bty936

By:

Liu, Yuansheng;
Yu, Zuguo;
Dinger, Marcel E;
Li, Jinyan

Publication type:

Article

High efficiency referential genome compression algorithm.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2058, doi. 10.1093/bioinformatics/bty934

By:

Shi, Wei;
Chen, Jianhua;
Luo, Mao;
Chen, Min

Publication type:

Article

OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2133, doi. 10.1093/bioinformatics/bty933

By:

Smaili, Fatima Zohra;
Gao, Xin;
Hoehndorf, Robert

Publication type:

Article

Clusterdv: a simple density-based clustering method that is robust, general and automatic.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2125, doi. 10.1093/bioinformatics/bty932

By:

Marques, João C;
Orger, Michael B

Publication type:

Article

DeepT3: deep convolutional neural networks accurately identify Gram-negative bacterial type III secreted effectors using the N-terminal sequence.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2051, doi. 10.1093/bioinformatics/bty931

By:

Xue, Li;
Tang, Bin;
Chen, Wei;
Luo, Jiesi

Publication type:

Article

BacPaCS—Bacterial Pathogenicity Classification via Sparse-SVM.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2001, doi. 10.1093/bioinformatics/bty928

By:

Barash, Eran;
Sal-Man, Neta;
Sabato, Sivan;
Ziv-Ukelson, Michal

Publication type:

Article

Whisper: read sorting allows robust mapping of DNA sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2043, doi. 10.1093/bioinformatics/bty927

By:

Deorowicz, Sebastian;
Debudaj-Grabysz, Agnieszka;
Gudyś, Adam;
Grabowski, Szymon

Publication type:

Article

dtangle: accurate and robust cell type deconvolution.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2093, doi. 10.1093/bioinformatics/bty926

By:

Hunt, Gregory J;
Freytag, Saskia;
Bahlo, Melanie;
Gagnon-Bartsch, Johann A

Publication type:

Article

Improved inference of intermolecular contacts through protein–protein interaction prediction using coevolutionary analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2036, doi. 10.1093/bioinformatics/bty924

By:

Marrero, Miguel Correa;
Immink, Richard G H;
Ridder, Dick de;
Dijk, Aalt D J van

Publication type:

Article

Computational modeling of cellular structures using conditional deep generative networks.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2141, doi. 10.1093/bioinformatics/bty923

By:

Yuan, Hao;
Cai, Lei;
Wang, Zhengyang;
Hu, Xia;
Zhang, Shaoting;
Ji, Shuiwang

Publication type:

Article

Measurement error and variant-calling in deep Illumina sequencing of HIV.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2029, doi. 10.1093/bioinformatics/bty919

By:

Howison, Mark;
Coetzer, Mia;
Kantor, Rami

Publication type:

Article

Partially non-homogeneous dynamic Bayesian networks based on Bayesian regression models with partitioned design matrices.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2108, doi. 10.1093/bioinformatics/bty917

By:

Kamalabad, Mahdi Shafiee;
Heberle, Alexander Martin;
Thedieck, Kathrin;
Grzegorczyk, Marco

Publication type:

Article

GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2159, doi. 10.1093/bioinformatics/bty916

By:

Moerman, Thomas;
Santos, Sara Aibar;
González-Blas, Carmen Bravo;
Simm, Jaak;
Moreau, Yves;
Aerts, Jan;
Aerts, Stein

Publication type:

Article

wgd—simple command line tools for the analysis of ancient whole-genome duplications.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2153, doi. 10.1093/bioinformatics/bty915

By:

Zwaenepoel, Arthur;
Peer, Yves Van de

Publication type:

Article

Bastion3: a two-layer ensemble predictor of type III secreted effectors.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2017, doi. 10.1093/bioinformatics/bty914

By:

Wang, Jiawei;
Li, Jiahui;
Yang, Bingjiao;
Xie, Ruopeng;
Marquez-Lago, Tatiana T;
Leier, André;
Hayashida, Morihiro;
Akutsu, Tatsuya;
Zhang, Yanju;
Chou, Kuo-Chen;
Selkrig, Joel;
Zhou, Tieli;
Song, Jiangning;
Lithgow, Trevor

Publication type:

Article

SJARACNe: a scalable software tool for gene network reverse engineering from big data.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2165, doi. 10.1093/bioinformatics/bty907

By:

Khatamian, Alireza;
Paull, Evan O;
Califano, Andrea;
Yu, Jiyang

Publication type:

Article

Drug-Side Effect Context-Sensitive Network approach for drug target prediction.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2100, doi. 10.1093/bioinformatics/bty906

By:

Zhou, Mengshi;
Chen, Yang;
Xu, Rong

Publication type:

Article

MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs).

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2150, doi. 10.1093/bioinformatics/bty905

By:

Stewart, Robert D;
Auffret, Marc D;
Snelling, Timothy J;
Roehe, Rainer;
Watson, Mick

Publication type:

Article

BayMAP: a Bayesian hierarchical model for the analysis of PAR-CLIP data.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 1992, doi. 10.1093/bioinformatics/bty904

By:

Huessler, Eva-Maria;
Schäfer, Martin;
Schwender, Holger;
Landgraf, Pablo

Publication type:

Article

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. 2084, doi. 10.1093/bioinformatics/bty895

By:

Zhu, Anqi;
Ibrahim, Joseph G;
Love, Michael I

Publication type:

Article

RETRACTED: Analysis and prediction of β-turn types using multinomial logistic regression and artificial neural network.

Published in:

Bioinformatics, 2019, v. 35, n. 12, p. e8, doi. 10.1093/bioinformatics/btm094

By:

Mehdi, Poursheikhali Asgary;
Parviz, Abdolmaleki;
Anoshirvan, Kazemnejad;
Samad, Jahandidehs

Publication type:

Article