Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 11

Results: 29

VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1985, doi. 10.1093/bioinformatics/btz216

By:

Leung, Yuk Yee;
Valladares, Otto;
Chou, Yi-Fan;
Lin, Han-Jen;
Kuzma, Amanda B;
Cantwell, Laura;
Qu, Liming;
Gangadharan, Prabhakaran;
Salerno, William J;
Schellenberg, Gerard D;
Wang, Li-San

Publication type:

Article

VarSome: the human genomic variant search engine.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1978, doi. 10.1093/bioinformatics/bty897

By:

Kopanos, Christos;
Tsiolkas, Vasilis;
Kouris, Alexandros;
Chapple, Charles E;
Aguilera, Monica Albarca;
Meyer, Richard;
Massouras, Andreas

Publication type:

Article

ukbREST: efficient and streamlined data access for reproducible research in large biobanks.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1971, doi. 10.1093/bioinformatics/bty925

By:

Pividori, Milton;
Im, Hae Kyung

Publication type:

Article

TPMCalculator: one-step software to quantify mRNA abundance of genomic features.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1960, doi. 10.1093/bioinformatics/bty896

By:

Alvarez, Roberto Vera;
Pongor, Lorinc Sandor;
Mariño-Ramírez, Leonardo;
Landsman, David

Publication type:

Article

TissueEnrich: Tissue-specific gene enrichment analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1966, doi. 10.1093/bioinformatics/bty890

By:

Jain, Ashish;
Tuteja, Geetu

Publication type:

Article

Supervised non-negative matrix factorization methods for MALDI imaging applications.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1940, doi. 10.1093/bioinformatics/bty909

By:

Leuschner, Johannes;
Schmidt, Maximilian;
Fernsel, Pascal;
Lachmund, Delf;
Boskamp, Tobias;
Maass, Peter

Publication type:

Article

Statistical inference of the rate of RNA polymerase II elongation by total RNA sequencing.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1877, doi. 10.1093/bioinformatics/bty886

By:

Kawamura, Yumi;
Koyama, Shinsuke;
Yoshida, Ryo

Publication type:

Article

Simple tricks of convolutional neural network architectures improve DNA–protein binding prediction.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1837, doi. 10.1093/bioinformatics/bty893

By:

Cao, Zhen;
Zhang, Shihua

Publication type:

Article

simGWAS: a fast method for simulation of large scale case–control GWAS summary statistics.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1901, doi. 10.1093/bioinformatics/bty898

By:

Fortune, Mary D;
Wallace, Chris

Publication type:

Article

Set of approaches based on 3D structure and position specific-scoring matrix for predicting DNA-binding proteins.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1844, doi. 10.1093/bioinformatics/bty912

By:

Nanni, Loris;
Brahnam, Sheryl

Publication type:

Article

SENSE: Siamese neural network for sequence embedding and alignment-free comparison.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1820, doi. 10.1093/bioinformatics/bty887

By:

Zheng, Wei;
Yang, Le;
Genco, Robert J;
Wactawski-Wende, Jean;
Buck, Michael;
Sun, Yijun

Publication type:

Article

gwasurvivr: an R package for genome-wide survival analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1968, doi. 10.1093/bioinformatics/bty920

By:

Rizvi, Abbas A;
Karaesmen, Ezgi;
Morgan, Martin;
Preus, Leah;
Wang, Junke;
Sovic, Michael;
Hahn, Theresa;
Sucheston-Campbell, Lara E

Publication type:

Article

methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1958, doi. 10.1093/bioinformatics/bty892

By:

Ren, Xu;
Kuan, Pei Fen

Publication type:

Article

Measuring phylogenetic signal between categorical traits and phylogenies.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1862, doi. 10.1093/bioinformatics/bty800

By:

Borges, Rui;
Machado, João Paulo;
Gomes, Cidália;
Rocha, Ana Paula;
Antunes, Agostinho

Publication type:

Article

Long-term context-dependent genetic adaptation of the viral genetic cloud.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1907, doi. 10.1093/bioinformatics/bty891

By:

Braun, Tzipi;
Bordería, Antonio V;
Barbezange, Cyril;
Vignuzzi, Marco;
Louzoun, Yoram

Publication type:

Article

High-complexity regions in mammalian genomes are enriched for developmental genes.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1813, doi. 10.1093/bioinformatics/bty922

By:

Pirogov, Anton;
Pfaffelhuber, Peter;
Börsch-Haubold, Angelika;
Haubold, Bernhard

Publication type:

Article

pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1 H NMR spectra.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1916, doi. 10.1093/bioinformatics/bty837

By:

Rodriguez-Martinez, Andrea;
Ayala, Rafael;
Posma, Joram M;
Harvey, Nikita;
Jiménez, Beatriz;
Sonomura, Kazuhiro;
Sato, Taka-Aki;
Matsuda, Fumihiko;
Zalloua, Pierre;
Gauguier, Dominique;
Nicholson, Jeremy K;
Dumas, Marc-Emmanuel

Publication type:

Article

framework for identifying dysregulated chromatin regulators as master regulators in human cancer.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1805, doi. 10.1093/bioinformatics/bty836

By:

Ru, Beibei;
Sun, Jianlong;
Kang, Qingzheng;
Tong, Yin;
Zhang, Jiangwen

Publication type:

Article

Clustermatch: discovering hidden relations in highly diverse kinds of qualitative and quantitative data without standardization.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1931, doi. 10.1093/bioinformatics/bty899

By:

Pividori, Milton;
Cernadas, Andres;
Haro, Luis A de;
Carrari, Fernando;
Stegmayer, Georgina;
Milone, Diego H

Publication type:

Article

BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1893, doi. 10.1093/bioinformatics/bty908

By:

Zheng, Ruiqing;
Li, Min;
Chen, Xiang;
Wu, Fang-Xiang;
Pan, Yi;
Wang, Jianxin

Publication type:

Article

BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1885, doi. 10.1093/bioinformatics/bty900

By:

Papiez, Anna;
Marczyk, Michal;
Polanska, Joanna;
Polanski, Andrzej

Publication type:

Article

Antibody interface prediction with 3D Zernike descriptors and SVM.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1870, doi. 10.1093/bioinformatics/bty918

By:

Daberdaku, Sebastian;
Ferrari, Carlo

Publication type:

Article

Flexible design of multiple metagenomics classification pipelines with UGENE.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1963, doi. 10.1093/bioinformatics/bty901

By:

Rose, Rebecca;
Golosova, Olga;
Sukhomlinov, Dmitrii;
Tiunov, Aleksey;
Prosperi, Mattia

Publication type:

Article

Discovering network phenotype between genetic risk factors and disease status via diagnosis-aligned multi-modality regression method in Alzheimer's disease.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1948, doi. 10.1093/bioinformatics/bty911

By:

Wang, Meiling;
Hao, Xiaoke;
Huang, Jiashuang;
Shao, Wei;
Zhang, Daoqiang

Publication type:

Article

FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequences.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1852, doi. 10.1093/bioinformatics/bty921

By:

Moshiri, Niema;
Ragonnet-Cronin, Manon;
Wertheim, Joel O;
Mirarab, Siavash

Publication type:

Article

ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1974, doi. 10.1093/bioinformatics/bty902

By:

Silva, Tiago C;
Coetzee, Simon G;
Gull, Nicole;
Yao, Lijing;
Hazelett, Dennis J;
Noushmehr, Houtan;
Lin, De-Chen;
Berman, Benjamin P

Publication type:

Article

DrugThatGene: integrative analysis to streamline the identification of druggable genes, pathways and protein complexes from CRISPR screens.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1981, doi. 10.1093/bioinformatics/bty913

By:

Canver, Matthew C;
Bauer, Daniel E;
Maeda, Takahiro;
Pinello, Luca

Publication type:

Article

Disease gene identification based on generic and disease-specific genome networks.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1923, doi. 10.1093/bioinformatics/bty882

By:

Nam, Yonghyun;
Jhee, Jong Ho;
Cho, Junhee;
Lee, Ji-Hyun;
Shin, Hyunjung

Publication type:

Article

Alignment-free clustering of UMI tagged DNA molecules.

Published in:

Bioinformatics, 2019, v. 35, n. 11, p. 1829, doi. 10.1093/bioinformatics/bty888

By:

Orabi, Baraa;
Erhan, Emre;
McConeghy, Brian;
Volik, Stanislav V;
Bihan, Stephane Le;
Bell, Robert;
Collins, Colin C;
Chauve, Cedric;
Hach, Faraz

Publication type:

Article