Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 10

Results: 32

DeepHINT: understanding HIV-1 integration via deep learning with attention.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1660, doi. 10.1093/bioinformatics/bty842

By:

Hu, Hailin;
Xiao, An;
Zhang, Sai;
Li, Yangyang;
Shi, Xuanling;
Jiang, Tao;
Zhang, Linqi;
Zhang, Lei;
Zeng, Jianyang

Publication type:

Article

CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1634, doi. 10.1093/bioinformatics/bty861

By:

Svetlitsky, Dina;
Dagan, Tal;
Chalifa-Caspi, Vered;
Ziv-Ukelson, Michal

Publication type:

Article

Cross-type biomedical named entity recognition with deep multi-task learning.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1745, doi. 10.1093/bioinformatics/bty869

By:

Wang, Xuan;
Zhang, Yu;
Ren, Xiang;
Zhang, Yuhao;
Zitnik, Marinka;
Shang, Jingbo;
Langlotz, Curtis;
Han, Jiawei

Publication type:

Article

CoMM: a collaborative mixed model to dissecting genetic contributions to complex traits by leveraging regulatory information.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1644, doi. 10.1093/bioinformatics/bty865

By:

Yang, Can;
Wan, Xiang;
Lin, Xinyi;
Chen, Mengjie;
Zhou, Xiang;
Liu, Jin

Publication type:

Article

cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1766, doi. 10.1093/bioinformatics/bty863

By:

Lewis, T E;
Sillitoe, I;
Lees, J G

Publication type:

Article

BMDExpress 2: enhanced transcriptomic dose-response analysis workflow.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1780, doi. 10.1093/bioinformatics/bty878

By:

Phillips, Jason R;
Svoboda, Daniel L;
Tandon, Arpit;
Patel, Shyam;
Sedykh, Alex;
Mav, Deepak;
Kuo, Byron;
Yauk, Carole L;
Yang, Longlong;
Thomas, Russell S;
Gift, Jeff S;
Davis, J Allen;
Olszyk, Louis;
Merrick, B Alex;
Paules, Richard S;
Parham, Fred;
Saddler, Trey;
Shah, Ruchir R;
Auerbach, Scott S

Publication type:

Article

VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1768, doi. 10.1093/bioinformatics/bty894

By:

Leung, Yuk Yee;
Valladares, Otto;
Chou, Yi-Fan;
Lin, Han-Jen;
Kuzma, Amanda B;
Cantwell, Laura;
Qu, Liming;
Gangadharan, Prabhakaran;
Salerno, William J;
Schellenberg, Gerard D;
Wang, Li-San

Publication type:

Article

Towards region-specific propagation of protein functions.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1737, doi. 10.1093/bioinformatics/bty834

By:

Koo, Da Chen Emily;
Bonneau, Richard

Publication type:

Article

Thalia: semantic search engine for biomedical abstracts.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1799, doi. 10.1093/bioinformatics/bty871

By:

Soto, Axel J;
Przybyła, Piotr;
Ananiadou, Sophia

Publication type:

Article

Accurate detection of chimeric contigs via Bionano optical maps.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1760, doi. 10.1093/bioinformatics/bty850

By:

Pan, Weihua;
Lonardi, Stefano

Publication type:

Article

systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1668, doi. 10.1093/bioinformatics/bty832

By:

Crisan, Anamaria;
Gardy, Jennifer L;
Munzner, Tamara

Publication type:

Article

Strain-GeMS: optimized subspecies identification from microbiome data based on accurate variant modeling.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1789, doi. 10.1093/bioinformatics/bty844

By:

Tan, Chongyang;
Cui, Wei;
Cui, Xinping;
Ning, Kang

Publication type:

Article

SeeVis—3D space-time cube rendering for visualization of microfluidics image data.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1802, doi. 10.1093/bioinformatics/bty889

By:

Hattab, Georges;
Nattkemper, Tim W

Publication type:

Article

SCALOP: sequence-based antibody canonical loop structure annotation.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1774, doi. 10.1093/bioinformatics/bty877

By:

Wong, Wing Ki;
Georges, Guy;
Ros, Francesca;
Kelm, Sebastian;
Lewis, Alan P;
Taddese, Bruck;
Leem, Jinwoo;
Deane, Charlotte M

Publication type:

Article

RMTL: an R library for multi-task learning.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1797, doi. 10.1093/bioinformatics/bty831

By:

Cao, Han;
Zhou, Jiayu;
Schwarz, Emanuel

Publication type:

Article

Quality assessment for the putative intrinsic disorder in proteins.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1692, doi. 10.1093/bioinformatics/bty881

By:

Hu, Gang;
Wu, Zhonghua;
Oldfield, Christopher J;
Wang, Chen;
Kurgan, Lukasz

Publication type:

Article

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1786, doi. 10.1093/bioinformatics/bty875

By:

Zhang, Chi;
Dong, Shan-Shan;
Xu, Jun-Yang;
He, Wei-Ming;
Yang, Tie-Lin

Publication type:

Article

ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1771, doi. 10.1093/bioinformatics/bty839

By:

Morel, Benoit;
Kozlov, Alexey M;
Stamatakis, Alexandros

Publication type:

Article

Multi-insight visualization of multi-omics data via ensemble dimension reduction and tensor factorization.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1625, doi. 10.1093/bioinformatics/bty847

By:

Fanaee-T, Hadi;
Thoresen, Magne

Publication type:

Article

MetWork: a web server for natural products anticipation.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1795, doi. 10.1093/bioinformatics/bty864

By:

Beauxis, Yann;
Genta-Jouve, Grégory

Publication type:

Article

ABC random forests for Bayesian parameter inference.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1720, doi. 10.1093/bioinformatics/bty867

By:

Raynal, Louis;
Marin, Jean-Michel;
Pudlo, Pierre;
Ribatet, Mathieu;
Robert, Christian P;
Estoup, Arnaud

Publication type:

Article

MetaSMC: a coalescent-based shotgun sequence simulator for evolving microbial populations.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1677, doi. 10.1093/bioinformatics/bty840

By:

Liao, Ki-Hok;
Hon, Wing-Kai;
Tang, Chuan-Yi;
Hsieh, Wen-Ping

Publication type:

Article

Landscape of multi-tissue global gene expression reveals the regulatory signatures of feed efficiency in beef cattle.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1712, doi. 10.1093/bioinformatics/bty883

By:

Sun, Hui-Zeng;
Zhao, Ke;
Zhou, Mi;
Chen, Yanhong;
Guan, Le Luo

Publication type:

Article

Joint analysis of individual-level and summary-level GWAS data by leveraging pleiotropy.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1729, doi. 10.1093/bioinformatics/bty870

By:

Dai, Mingwei;
Wan, Xiang;
Peng, Hao;
Wang, Yao;
Liu, Yue;
Liu, Jin;
Xu, Zongben;
Yang, Can

Publication type:

Article

Integrative cancer patient stratification via subspace merging.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1653, doi. 10.1093/bioinformatics/bty866

By:

Ding, Hao;
Sharpnack, Michael;
Wang, Chao;
Huang, Kun;
Machiraju, Raghu

Publication type:

Article

global transcriptomic pipeline decoding core network of genes involved in stages leading to acquisition of drug-resistance to cisplatin in osteosarcoma cells.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1701, doi. 10.1093/bioinformatics/bty868

By:

Niveditha, Divya;
Mukherjee, Sudeshna;
Majumder, Syamantak;
Chowdhury, Rajdeep;
Chowdhury, Shibasish

Publication type:

Article

GeneLab: Omics database for spaceflight experiments.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1753, doi. 10.1093/bioinformatics/bty884

By:

Ray, Shayoni;
Gebre, Samrawit;
Fogle, Homer;
Berrios, Daniel C;
Tran, Peter B;
Galazka, Jonathan M;
Costes, Sylvain V

Publication type:

Article

farPPI: a webserver for accurate prediction of protein-ligand binding structures for small-molecule PPI inhibitors by MM/PB(GB)SA methods.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1777, doi. 10.1093/bioinformatics/bty879

By:

Wang, Zhe;
Wang, Xuwen;
Li, Youyong;
Lei, Tailong;
Wang, Ercheng;
Li, Dan;
Kang, Yu;
Zhu, Feng;
Hou, Tingjun

Publication type:

Article

Expanded functionality, increased accuracy, and enhanced speed in the de novo genotyping-by-sequencing pipeline GBS-SNP-CROP.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1783, doi. 10.1093/bioinformatics/bty873

By:

Melo, Arthur T O;
Hale, Iago

Publication type:

Article

Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1686, doi. 10.1093/bioinformatics/bty876

By:

Sun, Saisai;
Wu, Qi;
Peng, Zhenling;
Yang, Jianyi

Publication type:

Article

DIGREM: an integrated web-based platform for detecting effective multi-drug combinations.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1792, doi. 10.1093/bioinformatics/bty860

By:

Zhang, Minzhe;
Lee, Sangin;
Yao, Bo;
Xiao, Guanghua;
Xu, Lin;
Xie, Yang

Publication type:

Article

VIRULIGN: fast codon-correct alignment and annotation of viral genomes.

Published in:

Bioinformatics, 2019, v. 35, n. 10, p. 1763, doi. 10.1093/bioinformatics/bty851

By:

Libin, Pieter J K;
Deforche, Koen;
Abecasis, Ana B;
Theys, Kristof

Publication type:

Article