Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 1

Results: 33

lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 20, doi. 10.1093/bioinformatics/bty544

By:

Haghshenas, Ehsan;
Sahinalp, S Cenk;
Hach, Faraz

Publication type:

Article

Seave: a comprehensive web platform for storing and interrogating human genomic variation.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 122, doi. 10.1093/bioinformatics/bty540

By:

Gayevskiy, Velimir;
Roscioli, Tony;
Dinger, Marcel E;
Cowley, Mark J

Publication type:

Article

Kmer-db: instant evolutionary distance estimation.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 133, doi. 10.1093/bioinformatics/bty610

By:

Deorowicz, Sebastian;
Gudyś, Adam;
Długosz, Maciej;
Kokot, Marek;
Danek, Agnieszka

Publication type:

Article

WAVES: a web application for versatile enhanced bioinformatic services.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 140, doi. 10.1093/bioinformatics/bty639

By:

Chakiachvili, Marc;
Milanesi, Sylvain;
Chifolleau, Anne-Muriel Arigon;
Lefort, Vincent

Publication type:

Article

SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 178, doi. 10.1093/bioinformatics/bty622

By:

Inglese, Paolo;
Correia, Gonçalo;
Takats, Zoltan;
Nicholson, Jeremy K;
Glen, Robert C

Publication type:

Article

Unraveling the role of low-frequency mutated genes in breast cancer.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 36, doi. 10.1093/bioinformatics/bty520

By:

Lusito, Eleonora;
Felice, Barbara;
D'Ario, Giovanni;
Montani, Francesca;
Ogier, Alessandro;
Fiore, Pier Paolo Di;
Bianchi, Fabrizio

Publication type:

Article

Tightly integrated genomic and epigenomic data mining using tensor decomposition.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 112, doi. 10.1093/bioinformatics/bty513

By:

Fang, Jianwen

Publication type:

Article

SonicParanoid: fast, accurate and easy orthology inference.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 149, doi. 10.1093/bioinformatics/bty631

By:

Cosentino, Salvatore;
Iwasaki, Wataru

Publication type:

Article

pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 167, doi. 10.1093/bioinformatics/bty499

By:

Salvy, Pierre;
Fengos, Georgios;
Ataman, Meric;
Soh, Keng C;
Hatzimanikatis, Vassily;
Pathier, Thomas

Publication type:

Article

PepBDB: a comprehensive structural database of biological peptide–protein interactions.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 175, doi. 10.1093/bioinformatics/bty579

By:

Wen, Zeyu;
He, Jiahua;
Tao, Huanyu;
Huang, Sheng-You

Publication type:

Article

ShinyCNV: a Shiny/R application to view and annotate DNA copy number variations.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 126, doi. 10.1093/bioinformatics/bty546

By:

Gu, Zhaohui;
Mullighan, Charles G

Publication type:

Article

NeoDTI: neural integration of neighbor information from a heterogeneous network for discovering new drug–target interactions.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 104, doi. 10.1093/bioinformatics/bty543

By:

Wan, Fangping;
Hong, Lixiang;
Xiao, An;
Zeng, Jianyang;
Jiang, Tao

Publication type:

Article

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 152, doi. 10.1093/bioinformatics/bty609

By:

Antczak, Maciej;
Rybarczyk, Agnieszka;
Blazewicz, Jacek;
Szachniuk, Marta;
Zablocki, Marcin;
Zok, Tomasz

Publication type:

Article

Reproducible and replicable comparisons using SummarizedBenchmark.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 137, doi. 10.1093/bioinformatics/bty627

By:

Kimes, Patrick K;
Reyes, Alejandro

Publication type:

Article

htsget: a protocol for securely streaming genomic data.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 119, doi. 10.1093/bioinformatics/bty492

By:

Team, GA4GH Streaming Task;
Kelleher, Jerome;
Lin, Mike;
Albach, C H;
Glazer, David;
Birney, Ewan;
Gonzalez, Cristina Y;
Senf, Alexander;
Vikhorev, Alexander;
Keane, Thomas M;
Davies, Robert;
Gourtovaia, Marina;
Jackson, David K;
Nowak, Andrew;
Tovar-Corona, Jaime M;
Kemp, Aaron;
Marshall, John

Publication type:

Article

A network-based zoning for parallel whole-cell simulation.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 88, doi. 10.1093/bioinformatics/bty530

By:

Das, Barnali;
Patil, Abhijeet Rajendra;
Mitra, Pralay

Publication type:

Article

GWASinlps: non-local prior based iterative SNP selection tool for genome-wide association studies.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 1, doi. 10.1093/bioinformatics/bty472

By:

Sanyal, Nilotpal;
Lo, Min-Tzu;
Chen, Chi-Hua;
Kauppi, Karolina;
Djurovic, Srdjan;
Andreassen, Ole A;
Johnson, Valen E

Publication type:

Article

Graph-guided multi-task sparse learning model: a method for identifying antigenic variants of influenza A(H3N2) virus.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 77, doi. 10.1093/bioinformatics/bty457

By:

Han, Lei;
Li, Lei;
Wen, Feng;
Zhong, Lei;
Wan, Xiu-Feng;
Zhang, Tong

Publication type:

Article

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 95, doi. 10.1093/bioinformatics/bty537

By:

Ghaemi, Mohammad Sajjad;
Culos, Anthony;
Stanley, Natalie;
Tanada, Athena;
Tsai, Amy;
Gaudilliere, Dyani;
Ganio, Edward;
Han, Xiaoyuan;
Ando, Kazuo;
McNeil, Leslie;
Tingle, Martha;
Angst, Martin S;
Gaudilliere, Brice;
Aghaeepour, Nima;
Sirota, Marina;
Winn, Virginia D;
Druzin, Maurice L;
Gibbs, Ronald;
Nia, Vahid Partovi;
Agard, Bruno

Publication type:

Article

Matt: Unix tools for alternative splicing analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 130, doi. 10.1093/bioinformatics/bty606

By:

Gohr, André;
Irimia, Manuel

Publication type:

Article

GrandPrix: scaling up the Bayesian GPLVM for single-cell data.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 47, doi. 10.1093/bioinformatics/bty533

By:

Ahmed, Sumon;
Rattray, Magnus;
Boukouvalas, Alexis

Publication type:

Article

GIGSEA: genotype imputed gene set enrichment analysis using GWAS summary level data.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 160, doi. 10.1093/bioinformatics/bty529

By:

Zhu, Shijia;
Qian, Tongqi;
Hoshida, Yujin;
Shen, Yuan;
Yu, Jing;
Hao, Ke

Publication type:

Article

GECO: gene expression correlation analysis after genetic algorithm-driven deconvolution.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 156, doi. 10.1093/bioinformatics/bty623

By:

Najafov, Jamil;
Najafov, Ayaz

Publication type:

Article

Exploring drivers of gene expression in the Cancer Genome Atlas.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 62, doi. 10.1093/bioinformatics/bty551

By:

Rau, Andrea;
Flister, Michael;
Rui, Hallgeir;
Auer, Paul L

Publication type:

Article

emeraLD: rapid linkage disequilibrium estimation with massive datasets.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 164, doi. 10.1093/bioinformatics/bty547

By:

Quick, Corbin;
Taliun, Daniel;
Abecasis, Gonçalo;
Boehnke, Michael;
Kang, Hyun Min;
Fuchsberger, Christian

Publication type:

Article

Differential coexpression in human tissues and the confounding effect of mean expression levels.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 55, doi. 10.1093/bioinformatics/bty538

By:

Farahbod, Marjan;
Pavlidis, Paul

Publication type:

Article

BrainEXP: a database featuring with spatiotemporal expression variations and co-expression organizations in human brains.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 172, doi. 10.1093/bioinformatics/bty576

By:

Jiao, Chuan;
Xia, Cuihua;
Wang, Kangli;
Jiang, Yi;
Huang, Lingling;
Dai, Rujia;
Wei, Yu;
Xia, Yan;
Meng, Qingtuan;
Yi, Liu;
Duan, Fangyuan;
Dai, Jiacheng;
Zhao, Shunan;
Yan, Pengpeng;
Shen, Zhaoming;
Tan, Zexi;
Tan, Yanyan;
Ouyang, Yanmei;
Liu, Chunyu;
Chen, Chao

Publication type:

Article

A descriptive marker gene approach to single-cell pseudotime inference.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 28, doi. 10.1093/bioinformatics/bty498

By:

Campbell, Kieran R;
Yau, Christopher

Publication type:

Article

The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 12, doi. 10.1093/bioinformatics/bty523

By:

Gil, Nelson;
Fiser, Andras

Publication type:

Article

Broom: application for non-redundant storage of high throughput sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 143, doi. 10.1093/bioinformatics/bty580

By:

Albayrak, Levent;
Golovko, George;
Fofanov, Yuriy;
Khanipov, Kamil

Publication type:

Article

ACDtool: a web-server for the generic analysis of large data sets of counts.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 170, doi. 10.1093/bioinformatics/bty640

By:

Claverie, Jean-Michel;
Ta, Thi Ngan

Publication type:

Article

Cryfa: a secure encryption tool for genomic data.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 146, doi. 10.1093/bioinformatics/bty645

By:

Hosseini, Morteza;
Pratas, Diogo;
Pinho, Armando J

Publication type:

Article

Comparative assessment of different familial aggregation methods in the context of large and unstructured pedigrees.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 69, doi. 10.1093/bioinformatics/bty541

By:

Weichenberger, Christian X;
Rainer, Johannes;
Pattaro, Cristian;
Pramstaller, Peter P;
Domingues, Francisco S

Publication type:

Article