Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 9

Results: 35

DiffGraph: an R package for identifying gene network rewiring using differential graphical models.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1571, doi. 10.1093/bioinformatics/btx836

By:

Zhang, Xiao-Fei;
Ou-Yang, Le;
Yang, Shuo;
Hu, Xiaohua;
Yan, Hong

Publication type:

Article

myTAI: evolutionary transcriptomics with R.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1589, doi. 10.1093/bioinformatics/btx835

By:

Drost, Hajk-Georg;
Gabel, Alexander;
Liu, Jialin;
Quint, Marcel;
Grosse, Ivo

Publication type:

Article

Mustguseal: a server for multiple structure-guided sequence alignment of protein families.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1583, doi. 10.1093/bioinformatics/btx831

By:

Suplatov, Dmitry A;
Kopylov, Kirill E;
Popova, Nina N;
Voevodin, Vladimir V;
Švedas, Vytas K

Publication type:

Article

DPMIND: degradome-based plant miRNA--target interaction and network database.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1618, doi. 10.1093/bioinformatics/btx824

By:

Fei, Yuhan;
Wang, Rui;
Li, Haoyuan;
Liu, Shu;
Zhang, Hongsheng;
Huang, Ji

Publication type:

Article

fMLC: fast multi-level clustering and visualization of large molecular datasets.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1577, doi. 10.1093/bioinformatics/btx810

By:

Vu, D;
Georgievska, S;
Szoke, S;
Kuzniar, A;
Robert, V

Publication type:

Article

Analyzing large scale genomic data on the cloud with Sparkhit.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1457, doi. 10.1093/bioinformatics/btx808

By:

Huang, Liren;
Krüger, Jan;
Sczyrba, Alexander

Publication type:

Article

DeepSynergy: predicting anti-cancer drug synergy with Deep Learning.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1538, doi. 10.1093/bioinformatics/btx806

By:

Preuer, Kristina;
Lewis, Richard P I;
Hochreiter, Sepp;
Bender, Andreas;
Bulusu, Krishna C;
Klambauer, Günter

Publication type:

Article

PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1580, doi. 10.1093/bioinformatics/btx830

By:

Gao, Yubang;
Wang, Huiyuan;
Zhang, Hangxiao;
Wang, Yongsheng;
Chen, Jinfeng;
Gu, Lianfeng

Publication type:

Article

CGManalyzer: an R package for analyzing continuous glucose monitoring studies.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1609, doi. 10.1093/bioinformatics/btx826

By:

Zhang, Xiaohua Douglas;
Zhang, Zhaozhi;
Wang, Dandan

Publication type:

Article

JASPAR RESTful API: accessing JASPAR data from any programming language.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1612, doi. 10.1093/bioinformatics/btx804

By:

Khan, Aziz;
Mathelier, Anthony

Publication type:

Article

Protein classification using modified n-grams and skip-grams.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1481, doi. 10.1093/bioinformatics/btx823

By:

Islam, S M Ashiqul;
Heil, Benjamin J;
Kearney, Christopher Michel;
Baker, Erich J

Publication type:

Article

Computational identification of binding energy hot spots in protein--RNA complexes using an ensemble approach.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1473, doi. 10.1093/bioinformatics/btx822

By:

Pan, Yuliang;
Wang, Zixiang;
Zhan, Weihua;
Deng, Lei

Publication type:

Article

DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1597, doi. 10.1093/bioinformatics/btx821

By:

Li, Min;
Yang, Jie;
Wu, Fang-Xiang;
Pan, Yi;
Wang, Jianxin

Publication type:

Article

An automated benchmarking platform for MHC class II binding prediction methods.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1522, doi. 10.1093/bioinformatics/btx820

By:

Andreatta, Massimo;
Trolle, Thomas;
Yan, Zhen;
Greenbaum, Jason A;
Peters, Bjoern;
Nielsen, Morten

Publication type:

Article

Missing value imputation for LC-MS metabolomics data by incorporating metabolic network and adduct ion relations.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1555, doi. 10.1093/bioinformatics/btx816

By:

Jin, Zhuxuan;
Kang, Jian;
Yu, Tianwei

Publication type:

Article

TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1615, doi. 10.1093/bioinformatics/btx812

By:

Wei, Lin;
Jin, Zhilin;
Yang, Shengjie;
Xu, Yanxun;
Zhu, Yitan;
Ji, Yuan

Publication type:

Article

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1547, doi. 10.1093/bioinformatics/btx815

By:

Zhu, Qile;
Li, Xiaolin;
Conesa, Ana;
Pereira, Cécile

Publication type:

Article

CscoreTool: fast Hi-C compartment analysis at high resolution.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1568, doi. 10.1093/bioinformatics/btx802

By:

Zheng, Xiaobin;
Zheng, Yixian

Publication type:

Article

gene2drug: a computational tool for pathway-based rational drug repositioning.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1498, doi. 10.1093/bioinformatics/btx800

By:

Napolitano, Francesco;
Carrella, Diego;
Mandriani, Barbara;
Pisonero-Vaquero, Sandra;
Sirci, Francesco;
Medina, Diego L;
Brunetti-Pierri, Nicola;
Bernardo, Diego di

Publication type:

Article

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1606, doi. 10.1093/bioinformatics/btx799

By:

Tahsin, Tasnia;
Weissenbacher, Davy;
O'Connor, Karen;
Magge, Arjun;
Scotch, Matthew;
Gonzalez-Hernandez, Graciela

Publication type:

Article

IndeCut evaluates performance of network motif discovery algorithms.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1514, doi. 10.1093/bioinformatics/btx798

By:

Ansariola, Mitra;
Megraw, Molly;
Koslicki, David

Publication type:

Article

TarHunter, a tool for predicting conserved microRNA targets and target mimics in plants.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1574, doi. 10.1093/bioinformatics/btx797

By:

Ma, Xuan;
Liu, Chunyan;
Gu, Lianfeng;
Mo, Beixin;
Cao, Xiaofeng;
Chen, Xuemei

Publication type:

Article

ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1594, doi. 10.1093/bioinformatics/btx796

By:

King, Brendan;
Farrah, Terry;
Richards, Matthew A;
Mundy, Michael;
Simeonidis, Evangelos;
Price, Nathan D

Publication type:

Article

Matrix factorization-based data fusion for the prediction of lncRNA--disease associations.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1529, doi. 10.1093/bioinformatics/btx794

By:

Fu, Guangyuan;
Wang, Jun;
Domeniconi, Carlotta;
Yu, Guoxian

Publication type:

Article

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1488, doi. 10.1093/bioinformatics/btx790

By:

Norton, Scott S;
Vaquero-Garcia, Jorge;
Lahens, Nicholas F;
Grant, Gregory R;
Barash, Yoseph

Publication type:

Article

Aether: leveraging linear programming for optimal cloud computing in genomics.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1565, doi. 10.1093/bioinformatics/btx787

By:

Luber, Jacob M;
Tierney, Braden T;
Cofer, Evan M;
Patel, Chirag J;
Kostic, Aleksandar D

Publication type:

Article

PINE-SPARKY.2 for automated NMR-based protein structure research.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1596, doi. 10.1093/bioinformatics/btx785

By:

Lee, Woonghee;
Markley, John L

Publication type:

Article

GIGI-Quick: a fast approach to impute missing genotypes in genome-wide association family data.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1591, doi. 10.1093/bioinformatics/btx782

By:

Kunji, Khalid;
Ullah, Ehsan;
Nato, Alejandro Q;
Wijsman, Ellen M;
Saad, Mohamad

Publication type:

Article

DNCON2: improved protein contact prediction using two-level deep convolutional neural networks.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1466, doi. 10.1093/bioinformatics/btx781

By:

Adhikari, Badri;
Hou, Jie;
Cheng, Jianlin

Publication type:

Article

Integrating 5hmC and gene expression data to infer regulatory mechanisms.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1441, doi. 10.1093/bioinformatics/btx777

By:

Mitrea, Cristina;
Wijesinghe, Priyanga;
Dyson, Greg;
Kruger, Adéle;
Ruden, Douglas M;
Drăghici, Sorin;
Bollig-Fischer, Aliccia

Publication type:

Article

Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1506, doi. 10.1093/bioinformatics/btx770

By:

Derkach, Andriy;
Zhang, Haoyu;
Chatterjee, Nilanjan

Publication type:

Article

PipelineDog: a simple and flexible graphic pipeline construction and maintenance tool.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1603, doi. 10.1093/bioinformatics/btx759

By:

Zhou, Anbo;
Zhang, Yeting;
Sun, Yazhou;
Xing, Jinchuan

Publication type:

Article

Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1562, doi. 10.1093/bioinformatics/btx757

By:

Cleary, Alan;
Farmer, Andrew

Publication type:

Article

pLoc-mHum: predict subcellular localization of multi-location human proteins via general PseAAC to winnow out the crucial GO information.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1448, doi. 10.1093/bioinformatics/btx711

By:

Cheng, Xiang;
Xiao, Xuan;
Chou, Kuo-Chen

Publication type:

Article

heatmaply: an R package for creating interactive cluster heatmaps for online publishing.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1600, doi. 10.1093/bioinformatics/btx657

By:

Galili, Tal;
O'Callaghan, Alan;
Sidi, Jonathan;
Sievert, Carson

Publication type:

Article