Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 8

Results: 33

Corrigendum.

Published in:

2018

By:

Kofler, Robert

Publication type:

Correction Notice

Delta: a new web-based 3D genome visualization and analysis platform.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1409, doi. 10.1093/bioinformatics/btx805

By:

Tang, Bixia;
Li, Feifei;
Li, Jing;
Zhao, Wenming;
Zhang, Zhihua

Publication type:

Article

DaMiRseq--an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1416, doi. 10.1093/bioinformatics/btx795

By:

Chiesa, Mattia;
Colombo, Gualtiero I;
Piacentini, Luca

Publication type:

Article

Gene Graphics: a genomic neighborhood data visualization web application.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1405, doi. 10.1093/bioinformatics/btx793

By:

Harrison, Katherine J;
Crécy-Lagard, Valérie de;
Zallot, Rémi

Publication type:

Article

FROGS: Find, Rapidly, OTUs with Galaxy Solution.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1287, doi. 10.1093/bioinformatics/btx791

By:

Escudié, Frédéric;
Auer, Lucas;
Bernard, Maria;
Mariadassou, Mahendra;
Cauquil, Laurent;
Vidal, Katia;
Maman, Sarah;
Hernandez-Raquet, Guillermina;
Combes, Sylvie;
Pascal, Géraldine

Publication type:

Article

Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1431, doi. 10.1093/bioinformatics/btx788

By:

Gutiérrez-Sacristán, Alba;
Guedj, Romain;
Korodi, Gabor;
Stedman, Jason;
Furlong, Laura I;
Patel, Chirag J;
Kohane, Isaac S;
Avillach, Paul

Publication type:

Article

Curatr: a web application for creating, curating and sharing a mass spectral library.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1436, doi. 10.1093/bioinformatics/btx786

By:

Palmer, Andrew;
Phapale, Prasad;
Fay, Dominik;
Alexandrov, Theodore

Publication type:

Article

Sequential feature selection and inference using multi-variate random forests.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1336, doi. 10.1093/bioinformatics/btx784

By:

Mayer, Joshua;
Rahman, Raziur;
Ghosh, Souparno;
Pal, Ranadip

Publication type:

Article

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1304, doi. 10.1093/bioinformatics/btx783

By:

Antczak, Maciej;
Popenda, Mariusz;
Zok, Tomasz;
Zurkowski, Michal;
Adamiak, Ryszard W;
Szachniuk, Marta

Publication type:

Article

DeepSF: deep convolutional neural network for mapping protein sequences to folds.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1295, doi. 10.1093/bioinformatics/btx780

By:

Hou, Jie;
Adhikari, Badri;
Cheng, Jianlin

Publication type:

Article

Identifying functionally informative evolutionary sequence profiles.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1278, doi. 10.1093/bioinformatics/btx779

By:

Gil, Nelson;
Fiser, Andras

Publication type:

Article

Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1414, doi. 10.1093/bioinformatics/btx778

By:

Graña, Osvaldo;
López-Fernández, Hugo;
Fdez-Riverola, Florentino;
Pisano, David González;
Glez-Peña, Daniel

Publication type:

Article

ASAR: visual analysis of metagenomes in R.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1404, doi. 10.1093/bioinformatics/btx775

By:

Orakov, Askarbek N;
Sakenova, Nazgul K;
Sorokin, Anatoly;
Goryanin, Igor I

Publication type:

Article

LitPathExplorer: a confidence-based visual text analytics tool for exploring literature-enriched pathway models.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1389, doi. 10.1093/bioinformatics/btx774

By:

Soto, Axel J;
Zerva, Chrysoula;
Batista-Navarro, Riza;
Ananiadou, Sophia

Publication type:

Article

Erratum.

Published in:

2018

By:

Chen, Xing;
Huang, Yu-An;
You, Zhu-Hong;
Yan, Gui-Ying;
Wang, Xue-Song

Publication type:

Correction Notice

SimulaTE: simulating complex landscapes of transposable elements of populations.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1419, doi. 10.1093/bioinformatics/btx772

By:

Kofler, Robert

Publication type:

Article

Model-based design of bistable cell factories for metabolic engineering.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1363, doi. 10.1093/bioinformatics/btx769

By:

Srinivasan, Shyam;
Cluett, William R;
Mahadevan, Radhakrishnan

Publication type:

Article

Classifying next-generation sequencing data using a zero-inflated Poisson model.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1329, doi. 10.1093/bioinformatics/btx768

By:

Zhou, Yan;
Wan, Xiang;
Zhang, Baoxue;
Tong, Tiejun

Publication type:

Article

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1401, doi. 10.1093/bioinformatics/btx767

By:

Koehorst, Jasper J;
Dam, Jesse C J van;
Saccenti, Edoardo;
Santos, Vitor A P Martins dos;
Suarez-Diez, Maria;
Schaap, Peter J

Publication type:

Article

Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1353, doi. 10.1093/bioinformatics/btx766

By:

Ali, Mehreen;
Khan, Suleiman A;
Wennerberg, Krister;
Aittokallio, Tero

Publication type:

Article

Meta-analytic principal component analysis in integrative omics application.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1321, doi. 10.1093/bioinformatics/btx765

By:

Kim, SungHwan;
Kang, Dongwan;
Huo, Zhiguang;
Park, Yongseok;
Tseng, George C

Publication type:

Article

CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1428, doi. 10.1093/bioinformatics/btx764

By:

Wu, Lin;
Li, Min;
Wang, Jianxin;
Wu, Fang-Xiang

Publication type:

Article

ASElux: an ultra-fast and accurate allelic reads counter.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1313, doi. 10.1093/bioinformatics/btx762

By:

Miao, Zong;
Alvarez, Marcus;
Pajukanta, Päivi;
Ko, Arthur

Publication type:

Article

An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1381, doi. 10.1093/bioinformatics/btx761

By:

Luo, Ling;
Yang, Zhihao;
Yang, Pei;
Zhang, Yin;
Wang, Lei;
Lin, Hongfei;
Wang, Jian

Publication type:

Article

FUn: a framework for interactive visualizations of large, high-dimensional datasets on the web.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1433, doi. 10.1093/bioinformatics/btx760

By:

Probst, Daniel;
Reymond, Jean-Louis

Publication type:

Article

Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equations.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1372, doi. 10.1093/bioinformatics/btx758

By:

Melckenbeeck, Ine;
Audenaert, Pieter;
Colle, Didier;
Pickavet, Mario

Publication type:

Article

MOCASSIN-prot: a multi-objective clustering approach for protein similarity networks.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1270, doi. 10.1093/bioinformatics/btx755

By:

Keel, Brittney N;
Deng, Bo;
Moriyama, Etsuko N

Publication type:

Article

glactools: a command-line toolset for the management of genotype likelihoods and allele counts.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1398, doi. 10.1093/bioinformatics/btx749

By:

Renaud, Gabriel

Publication type:

Article

Reproducible and flexible simulation experiments with ML-Rules and SESSL.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1424, doi. 10.1093/bioinformatics/btx741

By:

Warnke, T;
Helms, T;
Uhrmacher, A M

Publication type:

Article

GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1421, doi. 10.1093/bioinformatics/btx735

By:

Ligon, Thomas S;
Fröhlich, Fabian;
Chiş, Oana T;
Banga, Julio R;
Balsa-Canto, Eva;
Hasenauer, Jan

Publication type:

Article

Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1261, doi. 10.1093/bioinformatics/btx727

By:

Avsec, Žiga;
Barekatain, Mohammadamin;
Cheng, Jun;
Gagneur, Julien

Publication type:

Article

SANA NetGO: a combinatorial approach to using Gene Ontology (GO) terms to score network alignments.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1345, doi. 10.1093/bioinformatics/btx716

By:

Hayes, Wayne B;
Mamano, Nil

Publication type:

Article

Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1411, doi. 10.1093/bioinformatics/btx617

By:

Weber, Nick;
Liou, David;
Dommer, Jennifer;
MacMenamin, Philip;
Quiñones, Mariam;
Misner, Ian;
Oler, Andrew J;
Wan, Joe;
Kim, Lewis;
McCarthy, Meghan Coakley

Publication type:

Article