Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 7

Results: 30

SPRING: a kinetic interface for visualizing high dimensional single-cell expression data.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1246, doi. 10.1093/bioinformatics/btx792

By:

Weinreb, Caleb;
Wolock, Samuel;
Klein, Allon M

Publication type:

Article

NGLview-interactive molecular graphics for Jupyter notebooks.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1241, doi. 10.1093/bioinformatics/btx789

By:

Nguyen, Hai;
Case, David A;
Rose, Alexander S

Publication type:

Article

PEITH(Θ): perfecting experiments with information theory in Python with GPU support.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1249, doi. 10.1093/bioinformatics/btx776

By:

Dony, Leander;
Mackerodt, Jonas;
Ward, Scott;
Filippi, Sarah;
Stumpf, Michael P H;
Liepe, Juliane

Publication type:

Article

RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1125, doi. 10.1093/bioinformatics/btx771

By:

Rangavittal, Samarth;
Harris, Robert S;
Cechova, Monika;
Tomaszkiewicz, Marta;
Chikhi, Rayan;
Makova, Kateryna D;
Medvedev, Paul

Publication type:

Article

shinyCircos: an R/Shiny application for interactive creation of Circos plot.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1229, doi. 10.1093/bioinformatics/btx763

By:

Yu, Yiming;
Ouyang, Yidan;
Yao, Wen

Publication type:

Article

Accurate mapping of tRNA reads.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1116, doi. 10.1093/bioinformatics/btx756

By:

Hoffmann, Anne;
Fallmann, Jörg;
Vilardo, Elisa;
Mörl, Mario;
Stadler, Peter F;
Amman, Fabian

Publication type:

Article

BioBakery: a meta'omic analysis environment.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1235, doi. 10.1093/bioinformatics/btx754

By:

McIver, Lauren J;
Abu-Ali, Galeb;
Franzosa, Eric A;
Schwager, Randall;
Morgan, Xochitl C;
Waldron, Levi;
Segata, Nicola;
Huttenhower, Curtis

Publication type:

Article

Reactome diagram viewer: data structures and strategies to boost performance.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1208, doi. 10.1093/bioinformatics/btx752

By:

Fabregat, Antonio;
Sidiropoulos, Konstantinos;
Viteri, Guilherme;
Marin-Garcia, Pablo;
Ping, Peipei;
Stein, Lincoln;
D'Eustachio, Peter;
Hermjakob, Henning

Publication type:

Article

IDINGO--integrative differential network analysis in genomics with Shiny application.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1243, doi. 10.1093/bioinformatics/btx750

By:

Class, Caleb A;
Ha, Min Jin;
Baladandayuthapani, Veerabhadran;
Do, Kim-Anh

Publication type:

Article

Semi-supervised network inference using simulated gene expression dynamics.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1148, doi. 10.1093/bioinformatics/btx748

By:

Nguyen, Phan;
Braun, Rosemary

Publication type:

Article

GDSCTools for mining pharmacogenomic interactions in cancer.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1226, doi. 10.1093/bioinformatics/btx744

By:

Cokelaer, Thomas;
Chen, Elisabeth;
Iorio, Francesco;
Menden, Michael P;
Lightfoot, Howard;
Saez-Rodriguez, Julio;
Garnett, Mathew J

Publication type:

Article

The OncoPPi Portal: an integrative resource to explore and prioritize protein-protein interactions for cancer target discovery.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1183, doi. 10.1093/bioinformatics/btx743

By:

Ivanov, Andrei A;
Revennaugh, Brian;
Rusnak, Lauren;
Gonzalez-Pecchi, Valentina;
Mo, Xiulei;
Johns, Margaret A;
Du, Yuhong;
Cooper, Lee A D;
Moreno, Carlos S;
Khuri, Fadlo R

Publication type:

Article

3dRPC: a web server for 3D RNA-protein structure prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1238, doi. 10.1093/bioinformatics/btx742

By:

Huang, Yangyu;
Li, Haotian;
Xiao, Yi

Publication type:

Article

SATORI: a system for ontology-guided visual exploration of biomedical data repositories.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1200, doi. 10.1093/bioinformatics/btx739

By:

Lekschas, Fritz;
Gehlenborg, Nils

Publication type:

Article

Phenotypic stability and plasticity in GMP-derived cells as determined by their underlying regulatory network.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1174, doi. 10.1093/bioinformatics/btx736

By:

Ramírez, Carlos;
Mendoza, Luis

Publication type:

Article

Bioalcidae, samjs and vcffilterjs: object-oriented formatters and filters for bioinformatics files.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1224, doi. 10.1093/bioinformatics/btx734

By:

Lindenbaum, Pierre;
Redon, Richard

Publication type:

Article

MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1251, doi. 10.1093/bioinformatics/btx732

By:

Nelson, Justin;
Simpkins, Scott W;
Safizadeh, Hamid;
Li, Sheena C;
Piotrowski, Jeff S;
Hirano, Hiroyuki;
Yashiroda, Yoko;
Osada, Hiroyuki;
Yoshida, Minoru;
Boone, Charles

Publication type:

Article

DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1164, doi. 10.1093/bioinformatics/btx731

By:

Olayan, Rawan S;
Ashoor, Haitham;
Bajic, Vladimir B

Publication type:

Article

Extreme learning machines for reverse engineering of gene regulatory networks from expression time series.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1253, doi. 10.1093/bioinformatics/btx730

By:

Rubiolo, M;
Milone, D H;
Stegmayer, G

Publication type:

Article

Complex analyses of inverted repeats in mitochondrial genomes revealed their importance and variability.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1081, doi. 10.1093/bioinformatics/btx729

By:

Čechová, Jana;
Lýsek, Jiří;
Bartas, Martin;
Brázda, Václav

Publication type:

Article

Cost-effective and accurate method of measuring fetal fraction using SNP imputation.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1086, doi. 10.1093/bioinformatics/btx728

By:

Kim, Minjeong;
Kim, Jai-Hoon;
Kim, Kangseok;
Kim, Sunshin

Publication type:

Article

MicroRPM: a microRNA prediction model based only on plant small RNA sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1108, doi. 10.1093/bioinformatics/btx725

By:

Tseng, Kuan-Chieh;
Chiang-Hsieh, Yi-Fan;
Pai, Hsuan;
Chow, Chi-Nga;
Lee, Shu-Chuan;
Zheng, Han-Qin;
Kuo, Po-Li;
Li, Guan-Zhen;
Hung, Yu-Cheng;
Lin, Na-Sheng

Publication type:

Article

Deep learning for tumor classification in imaging mass spectrometry.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1215, doi. 10.1093/bioinformatics/btx724

By:

Behrmann, Jens;
Etmann, Christian;
Boskamp, Tobias;
Casadonte, Rita;
Kriegsmann, Jörg;
Maaβ, Peter

Publication type:

Article

Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1132, doi. 10.1093/bioinformatics/btx722

By:

Oliveira, Saulo H P de;
Law, Eleanor C;
Shi, Jiye;
Deane, Charlotte M

Publication type:

Article

AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1232, doi. 10.1093/bioinformatics/btx719

By:

Shin, Sunguk;
Lee, Hanna;
Son, Hyeonju;
Paik, Soonmyung;
Kim, Sangwoo

Publication type:

Article

RepLong: de novo repeat identification using long read sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1099, doi. 10.1093/bioinformatics/btx717

By:

Guo, Rui;
Li, Yan-Ran;
He, Shan;
Ou-Yang, Le;
Sun, Yiwen;
Zhu, Zexuan

Publication type:

Article

Robust inference of population structure from next-genergation sequencing data with systematic differences in sequencing.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1157, doi. 10.1093/bioinformatics/btx708

By:

Liao, Peizhou;
Satten, Glen A;
Hu, Yi-Juan

Publication type:

Article

PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1092, doi. 10.1093/bioinformatics/btx662

By:

Rawi, Reda;
Mall, Raghvendra;
Kunji, Khalid;
Shen, Chen-Hsiang;
Kwong, Peter D;
Chuang, Gwo-Yu

Publication type:

Article

Detecting hidden batch factors through data-adaptive adjustment for biological effects.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1141, doi. 10.1093/bioinformatics/btx635

By:

Yi, Haidong;
Raman, Ayush T;
Zhang, Han;
Allen, Genevera I;
Liu, Zhandong

Publication type:

Article

Compound image segmentation of published biomedical figures.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1192, doi. 10.1093/bioinformatics/btx611

By:

Li, Pengyuan;
Jiang, Xiangying;
Kambhamettu, Chandra;
Shatkay, Hagit

Publication type:

Article