Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 6

Results: 35

scHiCNorm: a software package to eliminate systematic biases in single-cell Hi-C data.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1046, doi. 10.1093/bioinformatics/btx747

By:

Liu, Tong;
Wang, Zheng

Publication type:

Article

Myriads: P-value-based multiple testing correction.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1043, doi. 10.1093/bioinformatics/btx746

By:

Carvajal-Rodríguez, Antonio

Publication type:

Article

SPECTRE: a suite of phylogenetic tools for reticulate evolution.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1056, doi. 10.1093/bioinformatics/btx740

By:

Bastkowski, Sarah;
Mapleson, Daniel;
Spillner, Andreas;
Wu, Taoyang;
Balvočiūtė, Monika;
Moulton, Vincent

Publication type:

Article

PlanNET: homology-based predicted interactome for multiple planarian transcriptomes.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1016, doi. 10.1093/bioinformatics/btx738

By:

Castillo-Lara, S;
Abril, J F

Publication type:

Article

ThetaMater: Bayesian estimation of population size parameter ϑ from genomic data.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1072, doi. 10.1093/bioinformatics/btx733

By:

Adams, Richard H;
Schield, Drew R;
Card, Daren C;
Corbin, Andrew;
Castoe, Todd A

Publication type:

Article

PREFMD: a web server for protein structure refinement via molecular dynamics simulations.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1063, doi. 10.1093/bioinformatics/btx726

By:

Heo, Lim;
Feig, Michael

Publication type:

Article

Identification of topological features in renal tumor microenvironment associated with patient survival.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1024, doi. 10.1093/bioinformatics/btx723

By:

Cheng, Jun;
Mo, Xiaokui;
Wang, Xusheng;
Parwani, Anil;
Feng, Qianjin;
Huang, Kun

Publication type:

Article

PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 943, doi. 10.1093/bioinformatics/btx721

By:

Avvaru, Akshay Kumar;
Sowpati, Divya Tej;
Mishra, Rakesh Kumar

Publication type:

Article

Membranome 2.0: database for proteome-wide profiling of bitopic proteins and their dimers.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1061, doi. 10.1093/bioinformatics/btx720

By:

Lomize, Andrei L;
Hage, Jacob M;
Pogozheva, Irina D

Publication type:

Article

Predicting loop conformational ensembles.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 949, doi. 10.1093/bioinformatics/btx718

By:

Marks, Claire;
Shi, Jiye;
Deane, Charlotte M

Publication type:

Article

TabPath: interactive tables for metabolic pathway analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1040, doi. 10.1093/bioinformatics/btx714

By:

Moraes, Lauro Ângelo Gonçalves de;
Felestrino, Érica Barbosa;
Assis, Renata de Almeida Barbosa;
Matos, Diogo;
Lima, Joubert de Castro;
Lima, Leandro de Araújo;
Almeida, Nalvo Franco;
Setubal, João Carlos;
Garcia, Camila Carrião Machado;
Moreira, Leandro Marcio

Publication type:

Article

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1037, doi. 10.1093/bioinformatics/btx713

By:

Tanizawa, Yasuhiro;
Fujisawa, Takatomo;
Nakamura, Yasukazu

Publication type:

Article

Orchid: a novel management, annotation and machine learning framework for analyzing cancer mutations.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 936, doi. 10.1093/bioinformatics/btx709

By:

Cario, Clinton L;
Witte, John S

Publication type:

Article

NanoStringNormCNV: pre-processing of NanoString CNV data.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1034, doi. 10.1093/bioinformatics/btx707

By:

Sendorek, Dorota H;
Lalonde, Emilie;
Yao, Cindy Q;
Sabelnykova, Veronica Y;
Bristow, Robert G;
Boutros, Paul C

Publication type:

Article

CommWalker: correctly evaluating modules in molecular networks in light of annotation bias.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 994, doi. 10.1093/bioinformatics/btx706

By:

Luecken, M D;
Page, M J T;
Crosby, A J;
Mason, S;
Reinert, G;
Deane, C M

Publication type:

Article

pedigreejs: a web-based graphical pedigree editor.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1069, doi. 10.1093/bioinformatics/btx705

By:

Carver, Tim;
Cunningham, Alex P;
Villiers, Chantal Babb de;
Lee, Andrew;
Hartley, Simon;
Tischkowitz, Marc;
Walter, Fiona M;
Easton, Douglas F;
Antoniou, Antonis C

Publication type:

Article

BEAM web server: a tool for structural RNA motif discovery.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1058, doi. 10.1093/bioinformatics/btx704

By:

Pietrosanto, Marco;
Adinolfi, Marta;
Casula, Riccardo;
Ausiello, Gabriele;
Ferrè, Fabrizio;
Helmer-Citterich, Manuela

Publication type:

Article

Estimation of QTL heritability based on pooled sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 978, doi. 10.1093/bioinformatics/btx703

By:

Tang, Weiqi;
Huang, Likun;
Bu, Suhong;
Zhang, Xuzhang;
Wu, Weiren

Publication type:

Article

ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 928, doi. 10.1093/bioinformatics/btx702

By:

Maarala, Altti Ilari;
Bzhalava, Zurab;
Dillner, Joakim;
Heljanko, Keijo;
Bzhalava, Davit

Publication type:

Article

Efficient comparative phylogenetics on large trees.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1053, doi. 10.1093/bioinformatics/btx701

By:

Louca, Stilianos;
Doebeli, Michael

Publication type:

Article

MOAT: efficient detection of highly mutated regions with the Mutations Overburdening Annotations Tool.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1031, doi. 10.1093/bioinformatics/btx700

By:

Lochovsky, Lucas;
Zhang, Jing;
Gerstein, Mark

Publication type:

Article

GRASS: semi-automated NMR-based structure elucidation of saccharides.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 957, doi. 10.1093/bioinformatics/btx696

By:

Kapaev, Roman R;
Toukach, Philip V

Publication type:

Article

Cpf1-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cpf1.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1077, doi. 10.1093/bioinformatics/btx695

By:

Park, Jeongbin;
Bae, Sangsu

Publication type:

Article

Visualization portal for genetic variation (VizGVar): a tool for interactive visualization of SNPs and somatic mutations in exons, genes and protein domains.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1048, doi. 10.1093/bioinformatics/btx694

By:

Solano-Román, Antonio;
Alfaro-Arias, Verónica;
Cruz-Castillo, Carlos;
Orozco-Solano, Allan

Publication type:

Article

An exact test for comparing a fixed quantitative property between gene sets.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 971, doi. 10.1093/bioinformatics/btx693

By:

Parks, Matthew M

Publication type:

Article

DIEGO: detection of differential alternative splicing using Aitchison's geometry.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1066, doi. 10.1093/bioinformatics/btx690

By:

Doose, Gero;
Bernhart, Stephan H;
Wagener, Rabea;
Hoffmann, Steve

Publication type:

Article

Machine learning annotation of human branchpoints.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 920, doi. 10.1093/bioinformatics/btx688

By:

Signal, Bethany;
Gloss, Brian S;
Dinger, Marcel E;
Mercer, Tim R

Publication type:

Article

Dynamic assessment of microbial ecology (DAME): a web app for interactive analysis and visualization of microbial sequencing data.

Published in:

2018

By:

Piccolo, Brian D;
Wankhade, Umesh D;
Chintapalli, Sree V;
Bhattacharyya, Sudeepa;
Chunqiao, Luo;
Shankar, Kartik

Publication type:

Product Review

ChIPWig: a random access-enabling lossless and lossy compression method for ChIP-seq data.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 911, doi. 10.1093/bioinformatics/btx685

By:

Ravanmehr, Vida;
Kim, Minji;
Wang, Zhiying;
Milenković, Olgica

Publication type:

Article

Group spike-and-slab lasso generalized linear models for disease prediction and associated genes detection by incorporating pathway information.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 901, doi. 10.1093/bioinformatics/btx684

By:

Tang, Zaixiang;
Shen, Yueping;
Li, Yan;
Zhang, Xinyan;
Wen, Jia;
Qian, Chen'ao;
Zhuang, Wenzhuo;
Shi, Xinghua;
Yi, Nengjun

Publication type:

Article

Unsupervised multiple kernel learning for heterogeneous data integration.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1009, doi. 10.1093/bioinformatics/btx682

By:

Mariette, Jérôme;
Villa-Vialaneix, Nathalie

Publication type:

Article

ArachnoServer 3.0: an online resource for automated discovery, analysis and annotation of spider toxins.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1074, doi. 10.1093/bioinformatics/btx661

By:

Pineda, Sandy S;
Chaumeil, Pierre-Alain;
Kunert, Anne;
Kaas, Quentin;
Thang, Mike W C;
Le, Lien;
Nuhn, Michael;
Herzig, Volker;
Saez, Natalie J;
Cristofori-Armstrong, Ben

Publication type:

Article

A probabilistic pathway score (PROPS) for classification with applications to inflammatory bowel disease.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 985, doi. 10.1093/bioinformatics/btx651

By:

Han, Lichy;
Maciejewski, Mateusz;
Brockel, Christoph;
Gordon, William;
Snapper, Scott B;
Korzenik, Joshua R;
Afzelius, Lovisa;
Altman, Russ B

Publication type:

Article

Quantifying biological samples using Linear Poisson Independent Component Analysis for MALDI-ToF mass spectra.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1001, doi. 10.1093/bioinformatics/btx630

By:

Deepaisarn, S;
Tar, P D;
Thacker, N A;
Seepujak, A;
McMahon, A W

Publication type:

Article

A Bayesian framework for the inference of gene regulatory networks from time and pseudo-time series data.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 964, doi. 10.1093/bioinformatics/btx605

By:

Sanchez-Castillo, M;
Blanco, D;
Tienda-Luna, I M;
Carrion, M C;
Huang, Yufei

Publication type:

Article