Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 24

Results: 30

GIFT: Guided and Interpretable Factorization for Tensors with an application to large-scale multi-platform cancer analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4151, doi. 10.1093/bioinformatics/bty490

By:

Lee, Jungwoo;
Oh, Sejoon;
Sael, Lee

Publication type:

Article

Database of evidence for precision oncology portal.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4315, doi. 10.1093/bioinformatics/bty531

By:

Sun, Sam Q;
Mashl, R Jay;
Sengupta, Sohini;
Scott, Adam D;
Wang, Weihua;
Wang, Liang-Bo;
Wyczalkowski, Matthew A;
Batra, Prag;
Ding, Li

Publication type:

Article

RiboSketch: versatile visualization of multi-stranded RNA and DNA secondary structure.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4297, doi. 10.1093/bioinformatics/bty468

By:

Lu, Jacob S;
Shapiro, Bruce A;
Bindewald, Eckart;
Kasprzak, Wojciech K

Publication type:

Article

Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4223, doi. 10.1093/bioinformatics/bty522

By:

Li, Fuyi;
Purcell, Anthony W;
Daly, Roger J;
Li, Chen;
Marquez-Lago, Tatiana T;
Leier, André;
Akutsu, Tatsuya;
Smith, A Ian;
Lithgow, Trevor;
Song, Jiangning;
Chou, Kuo-Chen

Publication type:

Article

GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4287, doi. 10.1093/bioinformatics/bty501

By:

Walker, Mark A;
Sharpe, Ted;
Whelan, Christopher W;
Pedamallu, Chandra Sekhar;
Bullman, Susan;
Meyerson, Matthew;
Ojesina, Akinyemi I

Publication type:

Article

Prediction of human-Bacillus anthracis protein–protein interactions using multi-layer neural network.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4159, doi. 10.1093/bioinformatics/bty504

By:

Ahmed, Ibrahim;
Christoffels, Alan;
Witbooi, Peter

Publication type:

Article

Predicting miRNA–disease association based on inductive matrix completion.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4256, doi. 10.1093/bioinformatics/bty503

By:

Chen, Xing;
Wang, Lei;
Qu, Jia;
Guan, Na-Na;
Li, Jian-Qiang

Publication type:

Article

AA9int: SNP interaction pattern search using non-hierarchical additive model set.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4141, doi. 10.1093/bioinformatics/bty461

By:

Consortium, The PRACTICAL;
Lin, Hui-Yi;
Tung, Heng-Yuan;
Giles, Graham G;
Wiklund, Fredrik;
Gronberg, Henrik;
Haiman, Christopher A;
Schleutker, Johanna;
Nordestgaard, Børge G;
Travis, Ruth C;
Hamdy, Freddie;
Neal, David E;
Pashayan, Nora;
Khaw, Kay-Tee;
Huang, Po-Yu;
Stanford, Janet L;
Blot, William J;
Thibodeau, Stephen N;
Maier, Christiane;
Kibel, Adam S

Publication type:

Article

Comparing complex variants in family trios.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4241, doi. 10.1093/bioinformatics/bty443

By:

Toptaş, Berke Ç;
Rakocevic, Goran;
Kómár, Péter;
Kural, Deniz

Publication type:

Article

BMC3C: binning metagenomic contigs using codon usage, sequence composition and read coverage.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4172, doi. 10.1093/bioinformatics/bty519

By:

Yu, Guoxian;
Jiang, Yuan;
Wang, Jun;
Zhang, Hao;
Luo, Haiwei

Publication type:

Article

appreci8: a pipeline for precise variant calling integrating 8 tools.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4205, doi. 10.1093/bioinformatics/bty518

By:

Sandmann, Sarah;
Varghese, Julian;
Ernsting, Jan;
Dugas, Martin;
Karimi, Mohsen;
Graaf, Aniek O de;
Reijden, Bert A van der;
Jansen, Joop H;
Rohde, Christian;
Göllner, Stefanie;
Müller-Tidow, Carsten;
Walldin, Gunilla;
Hellström-Lindberg, Eva;
Malcovati, Luca

Publication type:

Article

SOPanG: online text searching over a pan-genome.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4290, doi. 10.1093/bioinformatics/bty506

By:

Cisłak, Aleksander;
Grabowski, Szymon;
Holub, Jan

Publication type:

Article

Accelerating flux balance calculations in genome-scale metabolic models by localizing the application of loopless constraints.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4248, doi. 10.1093/bioinformatics/bty446

By:

Chan, Siu H J;
Wang, Lin;
Dash, Satyakam;
Maranas, Costas D

Publication type:

Article

snpAD: an ancient DNA genotype caller.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4165, doi. 10.1093/bioinformatics/bty507

By:

Prüfer, Kay

Publication type:

Article

SCIP: a single-cell image processor toolbox.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4318, doi. 10.1093/bioinformatics/bty505

By:

Martins, Leonardo;
Ribeiro, Andre S;
Neeli-Venkata, Ramakanth;
Oliveira, Samuel M D;
Häkkinen, Antti;
Fonseca, José M

Publication type:

Article

runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4302, doi. 10.1093/bioinformatics/bty512

By:

Orzechowski, Patryk;
Pańszczyk, Artur;
Huang, Xiuzhen;
Moore, Jason H

Publication type:

Article

Practical dynamic de Bruijn graphs.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4189, doi. 10.1093/bioinformatics/bty500

By:

Crawford, Victoria G;
Kuhnle, Alan;
Boucher, Christina;
Chikhi, Rayan;
Gagie, Travis

Publication type:

Article

PopViz: a webserver for visualizing minor allele frequencies and damage prediction scores of human genetic variations.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4307, doi. 10.1093/bioinformatics/bty536

By:

Zhang, Peng;
Bigio, Benedetta;
Rapaport, Franck;
Zhang, Shen-Ying;
Casanova, Jean-Laurent;
Abel, Laurent;
Boisson, Bertrand;
Itan, Yuval

Publication type:

Article

pyseer: a comprehensive tool for microbial pangenome-wide association studies.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4310, doi. 10.1093/bioinformatics/bty539

By:

Lees, John A;
Weiser, Jeffrey N;
Galardini, Marco;
Bentley, Stephen D;
Corander, Jukka

Publication type:

Article

Noise peak filtering in multi-dimensional NMR spectra using convolutional neural networks.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4300, doi. 10.1093/bioinformatics/bty581

By:

Kobayashi, Naohiro;
Shinya, Shoko;
Fujiwara, Toshimichi;
Hattori, Yoshikazu;
Nagata, Takashi;
Güntert, Peter;
Kojima, Chojiro

Publication type:

Article

SpliceRover: interpretable convolutional neural networks for improved splice site prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4180, doi. 10.1093/bioinformatics/bty497

By:

Zuallaert, Jasper;
Kim, Mijung;
Neve, Wesley De;
Godin, Fréderic;
Soete, Arne;
Saeys, Yvan

Publication type:

Article

LncmiRSRN: identification and analysis of long non-coding RNA related miRNA sponge regulatory network in human cancer.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4232, doi. 10.1093/bioinformatics/bty525

By:

Zhang, Junpeng;
Liu, Lin;
Li, Jiuyong;
Le, Thuc Duy

Publication type:

Article

MrBait: universal identification and design of targeted-enrichment capture probes.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4293, doi. 10.1093/bioinformatics/bty548

By:

Chafin, Tyler K;
Douglas, Marlis R;
Douglas, Michael E

Publication type:

Article

MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4284, doi. 10.1093/bioinformatics/bty510

By:

Ward, Lewis M;
Shih, Patrick M;
Fischer, Woodward W

Publication type:

Article

MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4313, doi. 10.1093/bioinformatics/bty528

By:

Chong, Jasmine;
Xia, Jianguo

Publication type:

Article

HUME: large-scale detection of causal genetic factors of adverse drug reactions.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4274, doi. 10.1093/bioinformatics/bty475

By:

Mansouri, Mehrdad;
Yuan, Bowei;
Ester, Martin;
Ross, Colin J D;
Carleton, Bruce C

Publication type:

Article

Hierarchical optimization for the efficient parametrization of ODE models.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4266, doi. 10.1093/bioinformatics/bty514

By:

Loos, Carolin;
Krause, Sabrina;
Hasenauer, Jan

Publication type:

Article

iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4196, doi. 10.1093/bioinformatics/bty508

By:

Su, Zhen-Dong;
Zhang, Zhao-Yue;
Zhao, Ya-Wei;
Huang, Yan;
Wang, Dong;
Chen, Wei;
Chou, Kuo-Chen;
Lin, Hao

Publication type:

Article

iS-CellR: a user-friendly tool for analyzing and visualizing single-cell RNA sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4305, doi. 10.1093/bioinformatics/bty517

By:

Patel, Mitulkumar V

Publication type:

Article

Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4213, doi. 10.1093/bioinformatics/bty521

By:

Morisse, Pierre;
Lecroq, Thierry;
Lefebvre, Arnaud

Publication type:

Article