Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 23

Results: 31

GateFinder: projection-based gating strategy optimization for flow and mass cytometry.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4131, doi. 10.1093/bioinformatics/bty430

By:

Aghaeepour, Nima;
Simonds, Erin F;
Knapp, David J H F;
Bruggner, Robert V;
Sachs, Karen;
Culos, Anthony;
Gherardini, Pier Federico;
Samusik, Nikolay;
Fragiadakis, Gabriela K;
Bendall, Sean C

Publication type:

Article

Estimating pseudocounts and fold changes for digital expression measurements.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4054, doi. 10.1093/bioinformatics/bty471

By:

Erhard, Florian

Publication type:

Article

ACPred-FL: a sequence-based predictor using effective feature representation to improve the prediction of anti-cancer peptides.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4007, doi. 10.1093/bioinformatics/bty451

By:

Wei, Leyi;
Zhou, Chen;
Chen, Huangrong;
Song, Jiangning;
Su, Ran

Publication type:

Article

Prioritizing predictive biomarkers for gene essentiality in cancer cells with mRNA expression data and DNA copy number profile.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 3975, doi. 10.1093/bioinformatics/bty467

By:

Guan, Yuanfang;
Li, Tingyang;
Zhang, Hongjiu;
Zhu, Fan;
Omenn, Gilbert S

Publication type:

Article

Distinguishing prognostic and predictive biomarkers: an information theoretic approach.

Published in:

2018

By:

Sechidis, Konstantinos;
Papangelou, Konstantinos;
Metcalfe, Paul D;
Svensson, David;
Weatherall, James;
Brown, Gavin

Publication type:

Correction Notice

SSMART: sequence-structure motif identification for RNA-binding proteins.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 3990, doi. 10.1093/bioinformatics/bty404

By:

Munteanu, Alina;
Mukherjee, Neelanjan;
Ohler, Uwe

Publication type:

Article

Deep convolutional networks for quality assessment of protein folds.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4046, doi. 10.1093/bioinformatics/bty494

By:

Derevyanko, Georgy;
Grudinin, Sergei;
Bengio, Yoshua;
Lamoureux, Guillaume

Publication type:

Article

Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4118, doi. 10.1093/bioinformatics/bty496

By:

Taboada, Blanca;
Estrada, Karel;
Ciria, Ricardo;
Merino, Enrique

Publication type:

Article

SONiCS: PCR stutter noise correction in genome-scale microsatellites.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4115, doi. 10.1093/bioinformatics/bty485

By:

Kedzierska, Katarzyna Z;
Gerber, Livia;
Cagnazzi, Daniele;
Krützen, Michael;
Ratan, Aakrosh;
Kistler, Logan

Publication type:

Article

The ancestral KH peptide at the root of a domain family with three different folds.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 3961, doi. 10.1093/bioinformatics/bty480

By:

Pereira, Joana;
Lupas, Andrei N

Publication type:

Article

Prediction of kinetics of protein folding with non-redundant contact information.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4034, doi. 10.1093/bioinformatics/bty478

By:

Censoni, Luciano;
Martínez, Leandro

Publication type:

Article

Predicting clone genotypes from tumor bulk sequencing of multiple samples.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4017, doi. 10.1093/bioinformatics/bty469

By:

Miura, Sayaka;
Gomez, Karen;
Murillo, Oscar;
Huuki, Louise A;
Vu, Tracy;
Buturla, Tiffany;
Kumar, Sudhir

Publication type:

Article

Accurate prediction of protein contact maps by coupling residual two-dimensional bidirectional long short-term memory with convolutional neural networks.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4039, doi. 10.1093/bioinformatics/bty481

By:

Hanson, Jack;
Paliwal, Kuldip;
Litfin, Thomas;
Yang, Yuedong;
Zhou, Yaoqi

Publication type:

Article

snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4112, doi. 10.1093/bioinformatics/bty460

By:

Nousiainen, Kari;
Kanduri, Kartiek;
Ricaño-Ponce, Isis;
Wijmenga, Cisca;
Lahesmaa, Riitta;
Kumar, Vinod;
Lähdesmäki, Harri

Publication type:

Article

Robust clustering of noisy high-dimensional gene expression data for patients subtyping.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4064, doi. 10.1093/bioinformatics/bty502

By:

Coretto, Pietro;
Serra, Angela;
Tagliaferri, Roberto

Publication type:

Article

The Rényi divergence enables accurate and precise cluster analysis for localization microscopy.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4102, doi. 10.1093/bioinformatics/bty403

By:

Staszowska, Adela D;
Fox-Roberts, Patrick;
Hirvonen, Liisa M;
Peddie, Christopher J;
Collinson, Lucy M;
Jones, Gareth E;
Cox, Susan

Publication type:

Article

ProAcePred: prokaryote lysine acetylation sites prediction based on elastic net feature optimization.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 3999, doi. 10.1093/bioinformatics/bty444

By:

Chen, Guodong;
Cao, Man;
Luo, Kun;
Wang, Lina;
Wen, Pingping;
Shi, Shaoping

Publication type:

Article

ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms' proteomes.

Published in:

2018

By:

Razban, Rostam M;
Gilson, Amy I;
Durfee, Niamh;
Strobelt, Hendrik;
Dinkla, Kasper;
Choi, Jeong-Mo;
Pfister, Hanspeter;
Shakhnovich, Eugene I

Publication type:

Correction Notice

On the power of epigenome-wide association studies using a disease-discordant twin design.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4073, doi. 10.1093/bioinformatics/bty532

By:

Li, Weilong;
Christiansen, Lene;
Hjelmborg, Jacob;
Baumbach, Jan;
Tan, Qihua

Publication type:

Article

13Check_RNA: a tool to evaluate 13C chemical shift assignments of RNA.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4124, doi. 10.1093/bioinformatics/bty470

By:

Icazatti, A A;
Martin, O A;
Villegas, M;
Szleifer, I;
Vila, J A

Publication type:

Article

Nextstrain: real-time tracking of pathogen evolution.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4121, doi. 10.1093/bioinformatics/bty407

By:

Hadfield, James;
Megill, Colin;
Bell, Sidney M;
Huddleston, John;
Potter, Barney;
Callender, Charlton;
Sagulenko, Pavel;
Bedford, Trevor;
Neher, Richard A

Publication type:

Article

MolArt: a molecular structure annotation and visualization tool.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4127, doi. 10.1093/bioinformatics/bty489

By:

Hoksza, David;
Gawron, Piotr;
Ostaszewski, Marek;
Schneider, Reinhard

Publication type:

Article

Modelling signalling networks from perturbation data.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4079, doi. 10.1093/bioinformatics/bty473

By:

Dorel, Mathurin;
Klinger, Bertram;
Gross, Torsten;
Sieber, Anja;
Prahallad, Anirudh;
Bosdriesz, Evert;
Wessels, Lodewyk F A;
Blüthgen, Nils

Publication type:

Article

Improved design and analysis of CRISPR knockout screens.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4095, doi. 10.1093/bioinformatics/bty450

By:

Chen, Chen-Hao;
Xiao, Tengfei;
Xu, Han;
Jiang, Peng;
Meyer, Clifford A;
Li, Wei;
Brown, Myles;
Liu, X Shirley

Publication type:

Article

MetQy—an R package to query metabolic functions of genes and genomes.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4134, doi. 10.1093/bioinformatics/bty447

By:

Martinez-Vernon, Andrea S;
Farrell, Frederick;
Soyer, Orkun S

Publication type:

Article

Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4027, doi. 10.1093/bioinformatics/bty482

By:

Bengtsson-Palme, Johan;
Richardson, Rodney T;
Meola, Marco;
Wurzbacher, Christian;
Tremblay, Émilie D;
Thorell, Kaisa;
Kanger, Kärt;
Eriksson, K Martin;
Bilodeau, Guillaume J;
Johnson, Reed M

Publication type:

Article

Learned protein embeddings for machine learning.

Published in:

2018

By:

Yang, Kevin K;
Wu, Zachary;
Bedbrook, Claire N;
Arnold, Frances H

Publication type:

Correction Notice

Modelling BioNano optical data and simulation study of genome map assembly.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 3966, doi. 10.1093/bioinformatics/bty456

By:

Chen, Ping;
Jing, Xinyun;
Ren, Jian;
Cao, Han;
Hao, Pei;
Li, Xuan

Publication type:

Article

GeneCT: a generalizable cancerous status and tissue origin classifier for pan-cancer biopsies.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4129, doi. 10.1093/bioinformatics/bty524

By:

Sun, Kun;
Wang, Jiguang;
Wang, Huating;
Sun, Hao

Publication type:

Article

Transfer learning for biomedical named entity recognition with neural networks.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 4087, doi. 10.1093/bioinformatics/bty449

By:

Giorgi, John M;
Bader, Gary D

Publication type:

Article

Meffil: efficient normalization and analysis of very large DNA methylation datasets.

Published in:

Bioinformatics, 2018, v. 34, n. 23, p. 3983, doi. 10.1093/bioinformatics/bty476

By:

Min, J L;
Hemani, G;
Smith, G Davey;
Relton, C;
Suderman, M

Publication type:

Article