Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 22

Results: 33

TriPoly: haplotype estimation for polyploids using sequencing data of related individuals.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3864, doi. 10.1093/bioinformatics/bty442

By:

Motazedi, Ehsan;
Ridder, Dick de;
Finkers, Richard;
Maliepaard, Chris;
Baldwin, Samantha;
Thomson, Susan;
Monaghan, Katrina

Publication type:

Article

TEcandidates: prediction of genomic origin of expressed transposable elements using RNA-seq data.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3915, doi. 10.1093/bioinformatics/bty423

By:

Valdebenito-Maturana, Braulio;
Riadi, Gonzalo

Publication type:

Article

The size matters? A computational tool to design bivalent ligands.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3857, doi. 10.1093/bioinformatics/bty422

By:

Pérez-Benito, Laura;
Lopez, Laura;
Cordomí, Arnau;
Pardo, Leonardo;
Henry, Andrew;
Matsoukas, Minos-Timotheos;
Pulido, Daniel;
Royo, Miriam;
Tresadern, Gary

Publication type:

Article

SciApps: a cloud-based platform for reproducible bioinformatics workflows.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3917, doi. 10.1093/bioinformatics/bty439

By:

Wang, Liya;
Lu, Zhenyuan;
Buren, Peter Van;
Ware, Doreen

Publication type:

Article

RIFRAF: a frame-resolving consensus algorithm.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3817, doi. 10.1093/bioinformatics/bty426

By:

Eren, Kemal;
Murrell, Ben

Publication type:

Article

PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3929, doi. 10.1093/bioinformatics/bty448

By:

Whelan, Simon;
Irisarri, Iker;
Burki, Fabien

Publication type:

Article

PASTA for proteins.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3939, doi. 10.1093/bioinformatics/bty495

By:

Collins, Kodi;
Warnow, Tandy

Publication type:

Article

Predicting Cancer Drug Response using a Recommender System.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3907, doi. 10.1093/bioinformatics/bty452

By:

Suphavilai, Chayaporn;
Bertrand, Denis;
Nagarajan, Niranjan

Publication type:

Article

panISa: ab initio detection of insertion sequences in bacterial genomes from short read sequence data.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3795, doi. 10.1093/bioinformatics/bty479

By:

Treepong, Panisa;
Guyeux, Christophe;
Meunier, Alexandre;
Hocquet, Didier;
Couchoud, Charlotte;
Valot, Benoit

Publication type:

Article

Motif scraper: a cross-platform, open-source tool for identifying degenerate nucleotide motif matches in FASTA files.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3926, doi. 10.1093/bioinformatics/bty437

By:

Roberson, Elisha D O

Publication type:

Article

Knotty: efficient and accurate prediction of complex RNA pseudoknot structures.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3849, doi. 10.1093/bioinformatics/bty420

By:

Jabbari, Hosna;
Wark, Ian;
Montemagno, Carlo;
Will, Sebastian

Publication type:

Article

mol2sphere: spherical decomposition of multi-domain molecules for visualization and coarse grained spatial modeling.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3948, doi. 10.1093/bioinformatics/bty487

By:

Masison, Joseph;
Michalski, Paul J;
Loew, Leslie M;
Schuyler, Adam D

Publication type:

Article

MASCOT: parameter and state inference under the marginal structured coalescent approximation.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3843, doi. 10.1093/bioinformatics/bty406

By:

Müller, Nicola F;
Stadler, Tanja;
Rasmussen, David

Publication type:

Article

Lost in translation: bioinformatic analysis of variations affecting the translation initiation codon in the human genome.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3788, doi. 10.1093/bioinformatics/bty453

By:

Abad-Navarro, Francisco;
Fernández-Breis, Jesualdo Tomás;
Morena-Barrio, María Eugenia de la;
Corral, Javier

Publication type:

Article

LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3825, doi. 10.1093/bioinformatics/bty428

By:

Yang, Cheng;
Yang, Longshu;
Zhou, Man;
Zhang, Chengjiu;
Xie, Haoling;
Zhu, Huaiqiu;
Wang, May D

Publication type:

Article

Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3882, doi. 10.1093/bioinformatics/bty445

By:

Tian, Mingyuan;
Reed, Jennifer L

Publication type:

Article

An in silico proteomics screen to predict and prioritize protein–protein interactions dependent on post-translationally modified motifs.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3898, doi. 10.1093/bioinformatics/bty434

By:

Schmoker, Anna M;
Geiger, Stefanie R;
Ebert, Alicia M;
Ballif, Bryan A;
Driscoll, Heather E;
Vincent, James J

Publication type:

Article

ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3931, doi. 10.1093/bioinformatics/bty463

By:

Dhanda, Sandeep Kumar;
Vita, Randi;
Ha, Brendan;
Grifoni, Alba;
Peters, Bjoern;
Sette, Alessandro

Publication type:

Article

LncRNAnet: long non-coding RNA identification using deep learning.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3889, doi. 10.1093/bioinformatics/bty418

By:

Baek, Junghwan;
Lee, Byunghan;
Kwon, Sunyoung;
Yoon, Sungroh

Publication type:

Article

iMetaLab 1.0: a web platform for metaproteomics data analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3954, doi. 10.1093/bioinformatics/bty466

By:

Liao, Bo;
Ning, Zhibin;
Cheng, Kai;
Zhang, Xu;
Li, Leyuan;
Mayne, Janice;
Figeys, Daniel

Publication type:

Article

iEnhancer-EL: identifying enhancers and their strength with ensemble learning approach.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3835, doi. 10.1093/bioinformatics/bty458

By:

Liu, Bin;
Li, Kai;
Huang, De-Shuang;
Chou, Kuo-Chen

Publication type:

Article

ICBdocker: a Docker image for proteome annotation and visualization.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3937, doi. 10.1093/bioinformatics/bty493

By:

Bordin, Nicola;
Devos, Damien P

Publication type:

Article

Grimon: graphical interface to visualize multi-omics networks.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3934, doi. 10.1093/bioinformatics/bty488

By:

Kanai, Masahiro;
Maeda, Yuichi;
Okada, Yukinori

Publication type:

Article

gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3945, doi. 10.1093/bioinformatics/bty484

By:

Irrgang, M Eric;
Hays, Jennifer M;
Kasson, Peter M

Publication type:

Article

ggCyto: next generation open-source visualization software for cytometry.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3951, doi. 10.1093/bioinformatics/bty441

By:

Van, Phu;
Jiang, Wenxin;
Gottardo, Raphael;
Finak, Greg

Publication type:

Article

ePCR: an R-package for survival and time-to-event prediction in advanced prostate cancer, applied to real-world patient cohorts.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3957, doi. 10.1093/bioinformatics/bty477

By:

Laajala, Teemu D;
Aittokallio, Tero;
Murtojärvi, Mika;
Virkki, Arho

Publication type:

Article

Bayesian integrative model for multi-omics data with missingness.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3801, doi. 10.1093/bioinformatics/bty775

By:

Fang, Zhou;
Tang, Gong;
Zhu, Li;
Tseng, George C;
Ma, Tianzhou;
Yan, Qi;
Wang, Ting;
Celedón, Juan C;
Chen, Wei

Publication type:

Article

deepNF: deep network fusion for protein function prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3873, doi. 10.1093/bioinformatics/bty440

By:

Gligorijević, Vladimir;
Barot, Meet;
Bonneau, Richard

Publication type:

Article

ClusterScan: simple and generalistic identification of genomic clusters.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3921, doi. 10.1093/bioinformatics/bty486

By:

Volpe, Massimiliano;
Miralto, Marco;
Gustincich, Stefano;
Sanges, Remo

Publication type:

Article

BioStructMap: a Python tool for integration of protein structure and sequence-based features.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3942, doi. 10.1093/bioinformatics/bty474

By:

Guy, Andrew J;
Irani, Vashti;
Richards, Jack S;
Ramsland, Paul A

Publication type:

Article

DeepMirTar: a deep-learning approach for predicting human miRNA targets.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3781, doi. 10.1093/bioinformatics/bty424

By:

Wen, Ming;
Zhang, Zhimin;
Lu, Hongmei;
Cong, Peisheng;
Li, Tonghua

Publication type:

Article

Axe: rapid, competitive sequence read demultiplexing using a trie.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3924, doi. 10.1093/bioinformatics/bty432

By:

Murray, Kevin D;
Borevitz, Justin O

Publication type:

Article

An automated method for detecting alternatively spliced protein domains.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3809, doi. 10.1093/bioinformatics/bty425

By:

Coelho, Vitor;
Sammeth, Michael

Publication type:

Article