Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 21

Results: 33

EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3719, doi. 10.1093/bioinformatics/bty401

By:

Orzechowski, Patryk;
Sipper, Moshe;
Huang, Xiuzhen;
Moore, Jason H

Publication type:

Article

Development and evaluation of a deep learning model for protein–ligand binding affinity prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3666, doi. 10.1093/bioinformatics/bty374

By:

Stepniewska-Dziubinska, Marta M;
Zielenkiewicz, Piotr;
Siedlecki, Pawel

Publication type:

Article

Detection of multi-dimensional co-exclusion patterns in microbial communities.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3695, doi. 10.1093/bioinformatics/bty414

By:

Albayrak, Levent;
Golovko, George;
Fofanov, Yuriy;
Khanipov, Kamil

Publication type:

Article

DDR: efficient computational method to predict drug–target interactions using graph mining and machine learning approaches.

Published in:

2018

By:

Olayan, Rawan S;
Ashoor, Haitham;
Bajic, Vladimir B

Publication type:

Correction Notice

ConSpeciFix: classifying prokaryotic species based on gene flow.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3738, doi. 10.1093/bioinformatics/bty400

By:

Bobay, Louis-Marie;
Ellis, Brian Shin-Hua;
Ochman, Howard

Publication type:

Article

Combining probabilistic alignments with read pair information improves accuracy of split-alignments.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3631, doi. 10.1093/bioinformatics/bty398

By:

Shrestha, Anish M S;
Yoshikawa, Naruki;
Asai, Kiyoshi

Publication type:

Article

TomoEED: fast edge-enhancing denoising of tomographic volumes.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3776, doi. 10.1093/bioinformatics/bty435

By:

Moreno, J J;
Martínez, J A;
Garzón, E M;
Martínez-Sánchez, A;
Fernández, J J

Publication type:

Article

TimeXNet Web: identifying cellular response networks from diverse omics time-course data.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3764, doi. 10.1093/bioinformatics/bty393

By:

Tan, Phit Ling;
Nakai, Kenta;
Patil, Ashwini;
López, Yosvany

Publication type:

Article

SoS Notebook: an interactive multi-language data analysis environment.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3768, doi. 10.1093/bioinformatics/bty405

By:

Peng, Bo;
Ma, Jun;
Wakefield, Chris;
Melott, James;
Chiu, Yulun;
Du, Di;
Weinstein, John N;
Wang, Gao;
Leong, Man Chong

Publication type:

Article

Single cell clustering based on cell-pair differentiability correlation and variance analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3684, doi. 10.1093/bioinformatics/bty390

By:

Jiang, Hao;
Sohn, Lydia L;
Huang, Haiyan;
Chen, Luonan

Publication type:

Article

Bio-knowledge-based filters improve residue–residue contact prediction accuracy.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3675, doi. 10.1093/bioinformatics/bty416

By:

Wozniak, P P;
Pelc, J;
Skrzypecki, M;
Kotulska, M;
Vriend, G

Publication type:

Article

Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3653, doi. 10.1093/bioinformatics/bty340

By:

Usmanova, Dinara R;
Bogatyreva, Natalya S;
Bernad, Joan Ariño;
Eremina, Aleksandra A;
Gorshkova, Anastasiya A;
Yakupova, Alisa G;
Kanevskiy, German M;
Lonishin, Lyubov R;
Meister, Alexander V;
Kondrashov, Fyodor A

Publication type:

Article

The revival of the Gini importance?

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3711, doi. 10.1093/bioinformatics/bty373

By:

Nembrini, Stefano;
König, Inke R;
Wright, Marvin N

Publication type:

Article

RecPhyloXML: a format for reconciled gene trees.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3646, doi. 10.1093/bioinformatics/bty389

By:

Duchemin, Wandrille;
Gence, Guillaume;
Boussau, Bastien;
Chifolleau, Anne-Muriel Arigon;
Arvestad, Lars;
Bansal, Mukul S;
Berry, Vincent;
Chevenet, François;
Comte, Nicolas;
Davín, Adrián A

Publication type:

Article

Quantification of biases in predictions of protein stability changes upon mutations.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3659, doi. 10.1093/bioinformatics/bty348

By:

Pucci, Fabrizio;
Kwasigroch, Jean Marc;
Rooman, Marianne;
Bernaerts, Katrien V

Publication type:

Article

PyCoTools: a Python toolbox for COPASI.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3702, doi. 10.1093/bioinformatics/bty409

By:

Welsh, Ciaran M;
Martinez-Guimera, Alvaro;
Shanley, Daryl P;
Fullard, Nicola;
Przyborski, Stefan A;
Proctor, Carole J;
Isfort, Robert J;
Bascom, Charles C;
Tasseff, Ryan

Publication type:

Article

Predicting gene structure changes resulting from genetic variants via exon definition features.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3616, doi. 10.1093/bioinformatics/bty324

By:

Majoros, William H;
Holt, Carson;
Yandell, Mark;
Campbell, Michael S;
Ware, Doreen;
Reddy, Timothy E

Publication type:

Article

PEA: an integrated R toolkit for plant epitranscriptome analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3747, doi. 10.1093/bioinformatics/bty421

By:

Zhai, Jingjing;
Cheng, Qian;
Tang, Yunjia;
Ma, Chuang;
Song, Jie

Publication type:

Article

Pathway-structured predictive modeling for multi-level drug response in multiple myeloma.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3609, doi. 10.1093/bioinformatics/bty436

By:

Zhang, Xinyan;
Li, Bingzong;
Hong, Yating;
Han, Huiying;
Song, Sha;
Xu, Hongxia;
Zhuang, Wenzhuo;
Yi, Zixuan;
Yi, Nengjun

Publication type:

Article

Optimality and identification of dynamic models in systems biology: an inverse optimal control framework.

Published in:

2018

By:

Tsiantis, Nikolaos;
Balsa-Canto, Eva;
Banga, Julio R

Publication type:

Correction Notice

NGL viewer: web-based molecular graphics for large complexes.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3755, doi. 10.1093/bioinformatics/bty419

By:

Rose, Alexander S;
Bradley, Anthony R;
Duarte, Jose M;
Prlić, Andreas;
Rose, Peter W;
Valasatava, Yana

Publication type:

Article

AC-DIAMOND v1: accelerating large-scale DNA–protein alignment.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3744, doi. 10.1093/bioinformatics/bty391

By:

Mai, Huijun;
Li, Dinghua;
Ting, Hing-Fung;
Zhang, Yifan;
Wong, Chi-Kwong;
Leung, Henry Chi-Ming;
Luo, Ruibang;
Lam, Tak-Wah

Publication type:

Article

MODE-TASK: large-scale protein motion tools.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3759, doi. 10.1093/bioinformatics/bty427

By:

Ross, Caroline;
Nizami, Bilal;
Glenister, Michael;
Amamuddy, Olivier Sheik;
Bishop, Özlem Tastan;
Atilgan, Ali Rana;
Atilgan, Canan

Publication type:

Article

MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3753, doi. 10.1093/bioinformatics/bty454

By:

Leray, Matthieu;
Ho, Shian-Lei;
Lin, I-Jeng;
Machida, Ryuji J

Publication type:

Article

mEBT: multiple-matching evidence-based translator of murine genomic responses for human immunity studies.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3741, doi. 10.1093/bioinformatics/bty431

By:

Tae, Donghyun;
Seok, Junhee

Publication type:

Article

LiveKraken––real-time metagenomic classification of illumina data.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3750, doi. 10.1093/bioinformatics/bty433

By:

Tausch, Simon H;
Andrusch, Andreas;
Strauch, Benjamin;
Loka, Tobias P;
Lindner, Martin S;
Renard, Bernhard Y;
Nitsche, Andreas

Publication type:

Article

Lineage-associated underrepresented permutations (LAUPs) of mammalian genomic sequences based on a Jellyfish-based LAUPs analysis application (JBLA).

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3624, doi. 10.1093/bioinformatics/bty392

By:

Zhang, Le;
Xiao, Ming;
Zhou, Jingsong;
Yu, Jun

Publication type:

Article

Indexed variation graphs for efficient and accurate resistome profiling.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3601, doi. 10.1093/bioinformatics/bty387

By:

Rowe, Will P M;
Winn, Martyn D

Publication type:

Article

GSCALite: a web server for gene set cancer analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3771, doi. 10.1093/bioinformatics/bty411

By:

Liu, Chun-Jie;
Hu, Fei-Fei;
Xia, Meng-Xuan;
Zhang, Qiong;
Guo, An-Yuan;
Han, Leng

Publication type:

Article

A graph-embedded deep feedforward network for disease outcome classification and feature selection using gene expression data.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3727, doi. 10.1093/bioinformatics/bty429

By:

Kong, Yunchuan;
Yu, Tianwei

Publication type:

Article

Exploring drug space with ChemMaps.com.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3773, doi. 10.1093/bioinformatics/bty412

By:

Borrel, Alexandre;
Kleinstreuer, Nicole C;
Fourches, Denis

Publication type:

Article

Exact Bayesian inference for phylogenetic birth-death models.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3638, doi. 10.1093/bioinformatics/bty337

By:

Parag, Kris V;
Pybus, Oliver G

Publication type:

Article

Using meshes for MeSH term enrichment and semantic analyses.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3766, doi. 10.1093/bioinformatics/bty410

By:

Yu, Guangchuang

Publication type:

Article