Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 2

Results: 31

TROVE: a user-friendly tool for visualizing and analyzing cancer hallmarks in signaling networks.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 314, doi. 10.1093/bioinformatics/btx600

By:

Chua, Huey Eng;
Bhowmick, Sourav S;
Zheng, Jie

Publication type:

Article

HoTResDB: host transcriptional response database for viral hemorrhagic fevers.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 321, doi. 10.1093/bioinformatics/btx599

By:

Lo, Jonathan;
Zhang, Deric;
Speranza, Emily;
Negron, Jose A;
Connor, John H

Publication type:

Article

Identifying simultaneous rearrangements in cancer genomes.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 346, doi. 10.1093/bioinformatics/btx745

By:

Oesper, Layla;
Dantas, Simone;
Raphael, Benjamin J

Publication type:

Article

A novel SCCA approach via truncated ℓ<sub>1</sub>-norm and truncated group lasso for brain imaging genetics.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 278, doi. 10.1093/bioinformatics/btx594

By:

Du, Lei;
Liu, Kefei;
Zhang, Tuo;
Yao, Xiaohui;
Yan, Jingwen;
Risacher, Shannon L;
Han, Junwei;
Guo, Lei;
Saykin, Andrew J;
Shen, Li

Publication type:

Article

Identifying structural variants using linked-read sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 353, doi. 10.1093/bioinformatics/btx712

By:

Elyanow, Rebecca;
Wu, Hsin-Ta;
Raphael, Benjamin J

Publication type:

Article

Identification of copy number variations and translocations in cancer cells from Hi-C data.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 338, doi. 10.1093/bioinformatics/btx664

By:

Chakraborty, Abhijit;
Ay, Ferhat

Publication type:

Article

MemBrain-contact 2.0: a new two-stage machine learning model for the prediction enhancement of transmembrane protein residue contacts in the full chain.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 230, doi. 10.1093/bioinformatics/btx593

By:

Yang, Jing;
Shen, Hong-Bin

Publication type:

Article

Phandango: an interactive viewer for bacterial population genomics.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 292, doi. 10.1093/bioinformatics/btx610

By:

Hadfield, James;
Croucher, Nicholas J;
Goater, Richard J;
Abudahab, Khalil;
Aanensen, David M;
Harris, Simon R

Publication type:

Article

Meta-server for automatic analysis, scoring and ranking of docking models.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 297, doi. 10.1093/bioinformatics/btx591

By:

Anashkina, Anastasia A;
Kravatsky, Yuri;
Kuznetsov, Eugene;
Makarov, Alexander A;
Adzhubei, Alexei A

Publication type:

Article

CCmiR: a computational approach for competitive and cooperative microRNA binding prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 198, doi. 10.1093/bioinformatics/btx606

By:

Ding, Jun;
Li, Xiaoman;
Hu, Haiyan

Publication type:

Article

MetExploreViz: web component for interactive metabolic network visualization.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 312, doi. 10.1093/bioinformatics/btx588

By:

Chazalviel, Maxime;
Frainay, Clément;
Poupin, Nathalie;
Vinson, Florence;
Merlet, Benjamin;
Gloaguen, Yoann;
Cottret, Ludovic;
Jourdan, Fabien

Publication type:

Article

RINspector: a Cytoscape app for centrality analyses and DynaMine flexibility prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 294, doi. 10.1093/bioinformatics/btx586

By:

Brysbaert, Guillaume;
Lorgouilloux, Kevin;
Vranken, Wim F;
Lensink, Marc F

Publication type:

Article

Detecting presence of mutational signatures in cancer with confidence.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 330, doi. 10.1093/bioinformatics/btx604

By:

Huang, Xiaoqing;
Wojtowicz, Damian;
Przytycka, Teresa M

Publication type:

Article

IntPred: a structure-based predictor of protein–protein interaction sites.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 223, doi. 10.1093/bioinformatics/btx585

By:

Northey, Thomas C;
Barešić, Anja;
Martin, Andrew C R

Publication type:

Article

SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 289, doi. 10.1093/bioinformatics/btx583

By:

Alvarez, Roberto Vera;
Li, Shan;
Landsman, David;
Ovcharenko, Ivan

Publication type:

Article

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 317, doi. 10.1093/bioinformatics/btx582

By:

Wandy, Joe;
Zhu, Yunfeng;
Hooft, Justin J J van der;
Daly, Rónán;
Barrett, Michael P;
Rogers, Simon

Publication type:

Article

LinkageMapView—rendering high-resolution linkage and QTL maps.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 306, doi. 10.1093/bioinformatics/btx576

By:

Ouellette, Lisa A;
Reid, Robert W;
Blanchard, Steven G;
Brouwer, Cory R

Publication type:

Article

SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 258, doi. 10.1093/bioinformatics/btx575

By:

Gao, Nan Papili;
Ud-Dean, S M Minhaz;
Gandrillon, Olivier;
Gunawan, Rudiyanto

Publication type:

Article

DART: a fast and accurate RNA-seq mapper with a partitioning strategy.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 190, doi. 10.1093/bioinformatics/btx558

By:

Lin, Hsin-Nan;
Hsu, Wen-Lian

Publication type:

Article

SiNoPsis: Single Nucleotide Polymorphisms selection and promoter profiling.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 303, doi. 10.1093/bioinformatics/btx570

By:

Boloc, Daniel;
Rodríguez, Natalia;
Gassó, Patricia;
Abril, Josep F;
Bernardo, Miquel;
Lafuente, Amalia;
Mas, Sergi

Publication type:

Article

A utility maximizing and privacy preserving approach for protecting kinship in genomic databases.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 181, doi. 10.1093/bioinformatics/btx568

By:

Kale, Gulce;
Ayday, Erman;
Tastan, Oznur

Publication type:

Article

MAJIQ-SPEL: web-tool to interrogate classical and complex splicing variations from RNA-Seq data.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 300, doi. 10.1093/bioinformatics/btx565

By:

Green, Christopher J;
Gazzara, Matthew R;
Barash, Yoseph

Publication type:

Article

NetProphet 2.0: mapping transcription factor networks by exploiting scalable data resources.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 249, doi. 10.1093/bioinformatics/btx563

By:

Kang, Yiming;
Liow, Hien-Haw;
Maier, Ezekiel J;
Brent, Michael R

Publication type:

Article

Omics AnalySIs System for PRecision Oncology (OASISPRO): a web-based omics analysis tool for clinical phenotype prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 319, doi. 10.1093/bioinformatics/btx572

By:

Yu, Kun-Hsing;
Fitzpatrick, Michael R;
Pappas, Luke;
Chan, Warren;
Kung, Jessica;
Snyder, Michael

Publication type:

Article

CCFold: rapid and accurate prediction of coiled-coil structures and application to modelling intermediate filaments.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 215, doi. 10.1093/bioinformatics/btx551

By:

Guzenko, Dmytro;
Strelkov, Sergei V

Publication type:

Article

A non-negative matrix factorization based method for predicting disease-associated miRNAs in miRNA-disease bilayer network.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 267, doi. 10.1093/bioinformatics/btx546

By:

Zhong, Yingli;
Xuan, Ping;
Wang, Xiao;
Zhang, Tiangang;
Li, Jianzhong;
Liu, Yong;
Zhang, Weixiong

Publication type:

Article

A graph regularized non-negative matrix factorization method for identifying microRNA-disease associations.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 239, doi. 10.1093/bioinformatics/btx545

By:

Xiao, Qiu;
Luo, Jiawei;
Liang, Cheng;
Cai, Jie;
Ding, Pingjian

Publication type:

Article

regNet: an R package for network-based propagation of gene expression alterations.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 308, doi. 10.1093/bioinformatics/btx544

By:

Seifert, Michael;
Beyer, Andreas

Publication type:

Article

Gearing up to handle the mosaic nature of life in the quest for orthologs.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 323, doi. 10.1093/bioinformatics/btx542

By:

Forslund, Kristoffer;
Pereira, Cecile;
Capella-Gutierrez, Salvador;
Silva, Alan Sousa da;
Altenhoff, Adrian;
Huerta-Cepas, Jaime;
Muffato, Matthieu;
Patricio, Mateus;
Vandepoele, Klaas;
Ebersberger, Ingo

Publication type:

Article

In silico identification of rescue sites by double force scanning.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 207, doi. 10.1093/bioinformatics/btx515

By:

Tiberti, Matteo;
Pandini, Alessandro;
Fraternali, Franca;
Fornili, Arianna

Publication type:

Article

JEPEGMIX2: improved gene-level joint analysis of eQTLs in cosmopolitan cohorts.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 286, doi. 10.1093/bioinformatics/btx509

By:

Chatzinakos, Chris;
Lee, Donghyung;
Webb, Bradley T;
Vladimirov, Vladimir I;
Kendler, Kenneth S;
Bacanu, Silviu-Alin

Publication type:

Article