Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 18

Results: 31

Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3118, doi. 10.1093/bioinformatics/bty309

By:

Raimondi, Daniele;
Orlando, Gabriele;
Moreau, Yves;
Vranken, Wim F

Publication type:

Article

TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3137, doi. 10.1093/bioinformatics/bty283

By:

Pflug, Florian G;
Haeseler, Arndt von

Publication type:

Article

TMCrys: predict propensity of success for transmembrane protein crystallization.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3126, doi. 10.1093/bioinformatics/bty342

By:

Varga, Julia K;
Tusnády, Gábor E

Publication type:

Article

TiSAn: estimating tissue-specific effects of coding and non-coding variants.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3061, doi. 10.1093/bioinformatics/bty301

By:

Vervier, Kévin;
Michaelson, Jacob J

Publication type:

Article

Spatial quantification of the synaptic activity phenotype across large populations of neurons with Markov random fields.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3196, doi. 10.1093/bioinformatics/bty322

By:

Robinson, Sean;
Courtney, Michael J

Publication type:

Article

RBind: computational network method to predict RNA binding sites.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3131, doi. 10.1093/bioinformatics/bty345

By:

Wang, Kaili;
Jian, Yiren;
Wang, Huiwen;
Zeng, Chen;
Zhao, Yunjie

Publication type:

Article

RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3214, doi. 10.1093/bioinformatics/bty314

By:

Bansal, Mukul S;
Kellis, Manolis;
Kordi, Misagh;
Kundu, Soumya

Publication type:

Article

A powerful approach reveals numerous expression quantitative trait haplotypes in multiple tissues.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3145, doi. 10.1093/bioinformatics/bty318

By:

Ying, Dingge;
Li, Mulin Jun;
Sham, Pak Chung;
Li, Miaoxin

Publication type:

Article

PathwaySplice: an R package for unbiased pathway analysis of alternative splicing in RNA-Seq data.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3220, doi. 10.1093/bioinformatics/bty317

By:

Yan, Aimin;
Ban, Yuguang;
Gao, Zhen;
Chen, Xi;
Wang, Lily

Publication type:

Article

miRNACancerMAP: an integrative web server inferring miRNA regulation network for cancer.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3211, doi. 10.1093/bioinformatics/bty320

By:

Tong, Yin;
Ru, Beibei;
Zhang, Jiangwen

Publication type:

Article

Minimap2: pairwise alignment for nucleotide sequences.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3094, doi. 10.1093/bioinformatics/bty191

By:

Li, Heng

Publication type:

Article

MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3225, doi. 10.1093/bioinformatics/bty331

By:

Hinshaw, Samuel J;
Lee, Amy H Y;
Gill, Erin E;
Hancock, Robert E W

Publication type:

Article

MechRNA: prediction of lncRNA mechanisms from RNA–RNA and RNA–protein interactions.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3101, doi. 10.1093/bioinformatics/bty208

By:

Gawronski, Alexander R;
Uhl, Michael;
Zhang, Yajia;
Lin, Yen-Yi;
Niknafs, Yashar S;
Ramnarine, Varune R;
Malik, Rohit;
Feng, Felix;
Chinnaiyan, Arul M;
Collins, Colin C

Publication type:

Article

MARDy: Mycology Antifungal Resistance Database.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3233, doi. 10.1093/bioinformatics/bty321

By:

Nash, Anthony;
Sewell, Thomas;
Farrer, Rhys A;
Abdolrasouli, Alireza;
Shelton, Jennifer M G;
Fisher, Matthew C;
Rhodes, Johanna

Publication type:

Article

iRO-3wPseKNC: identify DNA replication origins by three-window-based PseKNC.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3086, doi. 10.1093/bioinformatics/bty312

By:

Liu, Bin;
Weng, Fan;
Huang, De-Shuang;
Chou, Kuo-Chen

Publication type:

Article

ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3238, doi. 10.1093/bioinformatics/bty313

By:

Wang, Anliang;
Yan, Xiaolong;
Wei, Zhijun

Publication type:

Article

Identifying differentially methylated sites in samples with varying tumor purity.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3078, doi. 10.1093/bioinformatics/bty310

By:

Häkkinen, Antti;
Alkodsi, Amjad;
Facciotto, Chiara;
Zhang, Kaiyang;
Kaipio, Katja;
Leppä, Sirpa;
Carpén, Olli;
Grénman, Seija;
Hynninen, Johanna;
Hietanen, Sakari

Publication type:

Article

GlycoStore: a database of retention properties for glycan analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3231, doi. 10.1093/bioinformatics/bty319

By:

Zhao, Sophie;
Walsh, Ian;
Abrahams, Jodie L;
Royle, Louise;
Nguyen-Khuong, Terry;
Spencer, Daniel;
Fernandes, Daryl L;
Packer, Nicolle H;
Rudd, Pauline M;
Campbell, Matthew P

Publication type:

Article

GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3208, doi. 10.1093/bioinformatics/bty311

By:

Puigdevall, Pau;
Castelo, Robert

Publication type:

Article

GENEASE: real time bioinformatics tool for multi-omics and disease ontology exploration, analysis and visualization.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3160, doi. 10.1093/bioinformatics/bty182

By:

Ghandikota, Sudhir;
Hershey, Gurjit K Khurana;
Mersha, Tesfaye B

Publication type:

Article

EMUDRA: Ensemble of Multiple Drug Repositioning Approaches to improve prediction accuracy.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3151, doi. 10.1093/bioinformatics/bty325

By:

Zhou, Xianxiao;
Wang, Minghui;
Katsyv, Igor;
Irie, Hanna;
Zhang, Bin

Publication type:

Article

DEsingle for detecting three types of differential expression in single-cell RNA-seq data.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3223, doi. 10.1093/bioinformatics/bty332

By:

Miao, Zhun;
Deng, Ke;
Wang, Xiaowo;
Zhang, Xuegong

Publication type:

Article

DeepEfflux: a 2D convolutional neural network model for identifying families of efflux proteins in transporters.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3111, doi. 10.1093/bioinformatics/bty302

By:

Taju, Semmy Wellem;
Nguyen, Trinh-Trung-Duong;
Le, Nguyen-Quoc-Khanh;
Kusuma, Rosdyana Mangir Irawan;
Ou, Yu-Yen

Publication type:

Article

Deep reinforcement learning of cell movement in the early stage of C.elegans embryogenesis.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3169, doi. 10.1093/bioinformatics/bty323

By:

Wang, Zi;
Wang, Dali;
Li, Chengcheng;
Xu, Yichi;
Li, Husheng;
Bao, Zhirong

Publication type:

Article

CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3235, doi. 10.1093/bioinformatics/bty326

By:

Hernandez-Ferrer, Carles;
Gonzalez, Juan R

Publication type:

Article

CRISPR/Cas9 cleavage efficiency regression through boosting algorithms and Markov sequence profiling.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3069, doi. 10.1093/bioinformatics/bty298

By:

Peng, Hui;
Zheng, Yi;
Blumenstein, Michael;
Tao, Dacheng;
Li, Jinyan

Publication type:

Article

CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3217, doi. 10.1093/bioinformatics/bty316

By:

Müller, Sören;
Cho, Ara;
Liu, Siyuan J;
Lim, Daniel A;
Diaz, Aaron

Publication type:

Article

comoRbidity: an R package for the systematic analysis of disease comorbidities.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3228, doi. 10.1093/bioinformatics/bty315

By:

Gutiérrez-Sacristán, Alba;
Bravo, Àlex;
Giannoula, Alexia;
Mayer, Miguel A;
Sanz, Ferran;
Furlong, Laura I

Publication type:

Article

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3178, doi. 10.1093/bioinformatics/bty333

By:

Chen, Xing;
Xie, Di;
Wang, Lei;
Zhao, Qi;
You, Zhu-Hong;
Liu, Hongsheng

Publication type:

Article

BlockFeST: Bayesian calculation of region-specific FST to detect local adaptation.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3205, doi. 10.1093/bioinformatics/bty299

By:

Pfeifer, Bastian;
Lercher, Martin J

Publication type:

Article

Automatic selection of verification tools for efficient analysis of biochemical models.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3187, doi. 10.1093/bioinformatics/bty282

By:

Bakir, Mehmet Emin;
Konur, Savas;
Gheorghe, Marian;
Krasnogor, Natalio;
Stannett, Mike

Publication type:

Article