Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 17

Results: 82

Single cell network analysis with a mixture of Nested Effects Models.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i964, doi. 10.1093/bioinformatics/bty602

By:

Pirkl, Martin;
Beerenwinkel, Niko

Publication type:

Article

Towards an accurate and efficient heuristic for species/gene tree co-estimation.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i697, doi. 10.1093/bioinformatics/bty599

By:

Wang, Yaxuan;
Nakhleh, Luay

Publication type:

Article

SnapperDB: a database solution for routine sequencing analysis of bacterial isolates.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3028, doi. 10.1093/bioinformatics/bty212

By:

Dallman, Timothy;
Ashton, Philip;
Schafer, Ulf;
Jironkin, Aleksey;
Painset, Anais;
Shaaban, Sharif;
Hartman, Hassan;
Myers, Richard;
Underwood, Anthony;
Jenkins, Claire

Publication type:

Article

Topology independent structural matching discovers novel templates for protein interfaces.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i787, doi. 10.1093/bioinformatics/bty587

By:

Mirabello, Claudio;
Wallner, Björn

Publication type:

Article

SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i671, doi. 10.1093/bioinformatics/bty589

By:

El-Kebir, Mohammed

Publication type:

Article

VSClust: feature-based variance-sensitive clustering of omics data.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2965, doi. 10.1093/bioinformatics/bty224

By:

Schwämmle, Veit;
Jensen, Ole N

Publication type:

Article

Understanding the evolution of functional redundancy in metabolic networks.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i981, doi. 10.1093/bioinformatics/bty604

By:

Sambamoorthy, Gayathri;
Raman, Karthik

Publication type:

Article

A sequence family database built on ECOD structural domains.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2997, doi. 10.1093/bioinformatics/bty214

By:

Liao, Yuxing;
Schaeffer, R Dustin;
Pei, Jimin;
Grishin, Nick V

Publication type:

Article

Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i901, doi. 10.1093/bioinformatics/bty559

By:

Alshahrani, Mona;
Hoehndorf, Robert

Publication type:

Article

S-Cluster++: a fast program for solving the cluster containment problem for phylogenetic networks.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i680, doi. 10.1093/bioinformatics/bty594

By:

Yan, Hongwei;
Gunawan, Andreas D M;
Zhang, Louxin

Publication type:

Article

scanPAV: a pipeline for extracting presence–absence variations in genome pairs.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3022, doi. 10.1093/bioinformatics/bty189

By:

Giordano, Francesca;
Stammnitz, Maximilian R;
Murchison, Elizabeth P;
Ning, Zemin

Publication type:

Article

Scalable and exhaustive screening of metabolic functions carried out by microbial consortia.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i934, doi. 10.1093/bioinformatics/bty588

By:

Frioux, Clémence;
Fremy, Enora;
Trottier, Camille;
Siegel, Anne

Publication type:

Article

Ribopeaks: a web tool for bacterial classification through m/z data from ribosomal proteins.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3058, doi. 10.1093/bioinformatics/bty215

By:

Tomachewski, Douglas;
Galvão, Carolina Weigert;
Júnior, Arion de Campos;
Guimarães, Alaine Margarete;
Rocha, José Carlos Ferreira da;
Etto, Rafael Mazer

Publication type:

Article

piMGM: incorporating multi-source priors in mixed graphical models for learning disease networks.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i848, doi. 10.1093/bioinformatics/bty591

By:

Manatakis, Dimitris V;
Raghu, Vineet K;
Benos, Panayiotis V

Publication type:

Article

Recognition of CRISPR/Cas9 off-target sites through ensemble learning of uneven mismatch distributions.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i757, doi. 10.1093/bioinformatics/bty558

By:

Peng, Hui;
Zheng, Yi;
Zhao, Zhixun;
Liu, Tao;
Li, Jinyan

Publication type:

Article

pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3035, doi. 10.1093/bioinformatics/bty222

By:

Budach, Stefan;
Marsico, Annalisa

Publication type:

Article

Protein pocket detection via convex hull surface evolution and associated Reeb graph.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i830, doi. 10.1093/bioinformatics/bty598

By:

Zhao, Rundong;
Cang, Zixuan;
Tong, Yiying;
Wei, Guo-Wei

Publication type:

Article

Prioritising candidate genes causing QTL using hierarchical orthologous groups.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i612, doi. 10.1093/bioinformatics/bty615

By:

Vesztrocy, Alex Warwick;
Dessimoz, Christophe;
Redestig, Henning

Publication type:

Article

Predicting protein–protein interactions through sequence-based deep learning.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i802, doi. 10.1093/bioinformatics/bty573

By:

Hashemifar, Somaye;
Neyshabur, Behnam;
Khan, Aly A;
Xu, Jinbo

Publication type:

Article

Quantitative trait loci identification for brain endophenotypes via new additive model with random networks.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i866, doi. 10.1093/bioinformatics/bty557

By:

Wang, Xiaoqian;
Chen, Hong;
Yan, Jingwen;
Nho, Kwangsik;
Risacher, Shannon L;
Saykin, Andrew J;
Shen, Li;
Huang, Heng;
ADNI, for the

Publication type:

Article

PhyloProfile: dynamic visualization and exploration of multi-layered phylogenetic profiles.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3041, doi. 10.1093/bioinformatics/bty225

By:

Tran, Ngoc-Vinh;
Tzovaras, Bastian Greshake;
Ebersberger, Ingo

Publication type:

Article

PhenotypeSimulator: A comprehensive framework for simulating multi-trait, multi-locus genotype to phenotype relationships.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2951, doi. 10.1093/bioinformatics/bty197

By:

Meyer, Hannah Verena;
Birney, Ewan

Publication type:

Article

Parapred: antibody paratope prediction using convolutional and recurrent neural networks.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2944, doi. 10.1093/bioinformatics/bty305

By:

Liberis, Edgar;
Veličković, Petar;
Sormanni, Pietro;
Vendruscolo, Michele;
Liò, Pietro

Publication type:

Article

PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i715, doi. 10.1093/bioinformatics/bty595

By:

Andrusch, Andreas;
Dabrowski, Piotr W;
Klenner, Jeanette;
Tausch, Simon H;
Kohl, Claudia;
Osman, Abdalla A;
Renard, Bernhard Y;
Nitsche, Andreas

Publication type:

Article

Ontology-based validation and identification of regulatory phenotypes.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i857, doi. 10.1093/bioinformatics/bty605

By:

Kulmanov, Maxat;
Schofield, Paul N;
Gkoutos, Georgios V;
Hoehndorf, Robert

Publication type:

Article

An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i908, doi. 10.1093/bioinformatics/bty553

By:

Schmidt, Florian;
List, Markus;
Cukuroglu, Engin;
Köhler, Sebastian;
Göke, Jonathan;
Schulz, Marcel H

Publication type:

Article

Off-target predictions in CRISPR-Cas9 gene editing using deep learning.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i656, doi. 10.1093/bioinformatics/bty554

By:

Lin, Jiecong;
Wong, Ka-Chun

Publication type:

Article

MP-LAMP: parallel detection of statistically significant multi-loci markers on cloud platforms.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3047, doi. 10.1093/bioinformatics/bty219

By:

Yoshizoe, Kazuki;
Terada, Aika;
Tsuda, Koji

Publication type:

Article

MethylMix 2.0: an R package for identifying DNA methylation genes.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3044, doi. 10.1093/bioinformatics/bty156

By:

Cedoz, Pierre-Louis;
Prunello, Marcos;
Brennan, Kevin;
Gevaert, Olivier

Publication type:

Article

MDPbiome: microbiome engineering through prescriptive perturbations.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i838, doi. 10.1093/bioinformatics/bty562

By:

García-Jiménez, Beatriz;
Rosa, Tomás de la;
Wilkinson, Mark D

Publication type:

Article

Liquid-chromatography retention order prediction for metabolite identification.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i875, doi. 10.1093/bioinformatics/bty590

By:

Bach, Eric;
Szedmak, Sandor;
Brouard, Céline;
Böcker, Sebastian;
Rousu, Juho

Publication type:

Article

IRscope: an online program to visualize the junction sites of chloroplast genomes.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3030, doi. 10.1093/bioinformatics/bty220

By:

Amiryousefi, Ali;
Hyvönen, Jaakko;
Poczai, Peter

Publication type:

Article

LipidPedia: a comprehensive lipid knowledgebase.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2982, doi. 10.1093/bioinformatics/bty213

By:

Kuo, Tien-Chueh;
Tseng, Yufeng Jane

Publication type:

Article

Learning structural motif representations for efficient protein structure search.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i773, doi. 10.1093/bioinformatics/bty585

By:

Liu, Yang;
Ye, Qing;
Wang, Liwei;
Peng, Jian

Publication type:

Article

JAMI: fast computation of conditional mutual information for ceRNA network analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3050, doi. 10.1093/bioinformatics/bty221

By:

Hornakova, Andrea;
List, Markus;
Vreeken, Jilles;
Schulz, Marcel H

Publication type:

Article

iTOP: inferring the topology of omics data.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i988, doi. 10.1093/bioinformatics/bty636

By:

Aben, Nanne;
Westerhuis, Johan A;
Song, Yipeng;
Kiers, Henk A L;
Michaut, Magali;
Smilde, Age K;
Wessels, Lodewyk F A

Publication type:

Article

IRSOM, a reliable identifier of ncRNAs based on supervised self-organizing maps with rejection.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i620, doi. 10.1093/bioinformatics/bty572

By:

Platon, Ludovic;
Zehraoui, Farida;
Bendahmane, Abdelhafid;
Tahi, Fariza

Publication type:

Article

Leveraging known genomic variants to improve detection of variants, especially close-by Indels.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2918, doi. 10.1093/bioinformatics/bty183

By:

Vo, Nam S;
Phan, Vinhthuy

Publication type:

Article

Insights on the alteration of functionality of a tyrosine kinase 2 variant: a molecular dynamics study.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i781, doi. 10.1093/bioinformatics/bty556

By:

Lesgidou, Nastazia;
Eliopoulos, Elias;
Goulielmos, George N;
Vlassi, Metaxia

Publication type:

Article

Inference of the human polyadenylation code.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2889, doi. 10.1093/bioinformatics/bty211

By:

Leung, Michael K K;
Delong, Andrew;
Frey, Brendan J

Publication type:

Article

Identification and function of FAR protein family genes from a transcriptome analysis of Aphelenchoides besseyi.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2936, doi. 10.1093/bioinformatics/bty209

By:

Wang, Dong-Wei;
Xu, Chun-Ling;
Ding, Shan-Wen;
Huang, Xin;
Cheng, Xi;
Zhang, Chao;
Chen, Chun;
Xie, Hui

Publication type:

Article

iCFN: an efficient exact algorithm for multistate protein design.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i811, doi. 10.1093/bioinformatics/bty564

By:

Karimi, Mostafa;
Shen, Yang

Publication type:

Article

Higher-order molecular organization as a source of biological function.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i944, doi. 10.1093/bioinformatics/bty570

By:

Gaudelet, Thomas;
Malod-Dognin, Noël;
Pržulj, Nataša

Publication type:

Article

Hierarchical HotNet: identifying hierarchies of altered subnetworks.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i972, doi. 10.1093/bioinformatics/bty613

By:

Reyna, Matthew A;
Leiserson, Mark D M;
Raphael, Benjamin J

Publication type:

Article

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3032, doi. 10.1093/bioinformatics/bty300

By:

Clarke, Thomas H;
Brinkac, Lauren M;
Sutton, Granger;
Fouts, Derrick E

Publication type:

Article

Genome-by-genome approach for fast bacterial genealogical relationship evaluation.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3025, doi. 10.1093/bioinformatics/bty195

By:

Zhang, Ji;
Xiong, Yanwen;
Rogers, Lynn;
Carter, Glen P;
French, Nigel

Publication type:

Article

Generalizing biomedical relation classification with neural adversarial domain adaptation.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2973, doi. 10.1093/bioinformatics/bty190

By:

Rios, Anthony;
Kavuluru, Ramakanth;
Lu, Zhiyong

Publication type:

Article

ECCB 2018 Organization.

Published in:: Bioinformatics, 2018, v. 34, n. 17, p. i599, doi. 10.1093/bioinformatics/bty739
Publication type:: Article

ECCB 2018: The 17th European Conference on Computational Biology.

Published in:

2018

By:

Committee, the ECCB 2018 Steering;
Chair), Artemis G Hatzigeorgiou (ECCB 2018 Conference;
Co-chair), Pantelis Bagos (ECCB 2018 Conference;
Chair), Panayiotis V Benos (ECCB 2018 Programme;
Chair), Christoforos Nikolaou (ECCB 2018 Proceedings;
Chair), Yves Moreau (ECCB 2018 Highlights;
Co-chair), Ioannis Kavakiotis (ECCB 2018 Local Organizing Committee

Publication type:

Proceeding

GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 3038, doi. 10.1093/bioinformatics/bty303

By:

Ravasio, Viola;
Ritelli, Marco;
Legati, Andrea;
Giacopuzzi, Edoardo

Publication type:

Article