Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 15

Results: 34

NMRNet: a deep learning approach to automated peak picking of protein NMR spectra.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2590, doi. 10.1093/bioinformatics/bty134

By:

Klukowski, Piotr;
Augoff, Michał;
Zięba, Maciej;
Drwal, Maciej;
Gonczarek, Adam;
Walczak, Michał J

Publication type:

Article

QuimP: analyzing transmembrane signalling in highly deformable cells.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2695, doi. 10.1093/bioinformatics/bty169

By:

Baniukiewicz, Piotr;
Collier, Sharon;
Bretschneider, Till

Publication type:

Article

Repeat-aware evaluation of scaffolding tools.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2530, doi. 10.1093/bioinformatics/bty131

By:

Mandric, Igor;
Knyazev, Sergey;
Zelikovsky, Alex

Publication type:

Article

REStLESS: automated translation of glycan sequences from residue-based notation to SMILES and atomic coordinates.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2679, doi. 10.1093/bioinformatics/bty168

By:

Chernyshov, Ivan Yu;
Toukach, Philip V

Publication type:

Article

SCOTCH: subtype A coreceptor tropism classification in HIV-1.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2575, doi. 10.1093/bioinformatics/bty170

By:

Löchel, Hannah F;
Riemenschneider, Mona;
Frishman, Dmitrij;
Heider, Dominik

Publication type:

Article

SCRAM: a pipeline for fast index-free small RNA read alignment and visualization.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2670, doi. 10.1093/bioinformatics/bty161

By:

Fletcher, Stephen J;
Boden, Mikael;
Mitter, Neena;
Carroll, Bernard J

Publication type:

Article

accuMUlate: a mutation caller designed for mutation accumulation experiments.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2659, doi. 10.1093/bioinformatics/bty165

By:

Winter, David J;
Wu, Steven H;
Howell, Abigail A;
Azevedo, Ricardo B R;
Zufall, Rebecca A;
Cartwright, Reed A

Publication type:

Article

ADPredict: ADP-ribosylation site prediction based on physicochemical and structural descriptors.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2566, doi. 10.1093/bioinformatics/bty159

By:

Monte, Matteo Lo;
Manelfi, Candida;
Gemei, Marica;
Corda, Daniela;
Beccari, Andrea Rosario

Publication type:

Article

AGORA: organellar genome annotation from the amino acid and nucleotide references.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2661, doi. 10.1093/bioinformatics/bty196

By:

Jung, Jaehee;
Kim, Jong Im;
Jeong, Young-Sik;
Yi, Gangman

Publication type:

Article

Arioc: GPU-accelerated alignment of short bisulfite-treated reads.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2673, doi. 10.1093/bioinformatics/bty167

By:

Wilton, Richard;
Li, Xin;
Feinberg, Andrew P;
Szalay, Alexander S

Publication type:

Article

Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2546, doi. 10.1093/bioinformatics/bty155

By:

Wang, Jiawei;
Yang, Bingjiao;
Leier, André;
Marquez-Lago, Tatiana T;
Hayashida, Morihiro;
Rocker, Andrea;
Zhang, Yanju;
Akutsu, Tatsuya;
Chou, Kuo-Chen;
Strugnell, Richard A

Publication type:

Article

SimPhospho: a software tool enabling confident phosphosite assignment.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2690, doi. 10.1093/bioinformatics/bty151

By:

Suni, Veronika;
Suomi, Tomi;
Tsubosaka, Tomoya;
Imanishi, Susumu Y;
Elo, Laura L;
Corthals, Garry L

Publication type:

Article

A Bayesian framework for multiple trait colocalization from summary association statistics.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2538, doi. 10.1093/bioinformatics/bty147

By:

Giambartolomei, Claudia;
Liu, Jimmy Zhenli;
Zhang, Wen;
Hauberg, Mads;
Shi, Huwenbo;
Boocock, James;
Pickrell, Joe;
Jaffe, Andrew E;
Consortium, The CommonMind;
Pasaniuc, Bogdan

Publication type:

Article

CMV: visualization for RNA and protein family models and their comparisons.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2676, doi. 10.1093/bioinformatics/bty158

By:

Eggenhofer, Florian;
Hofacker, Ivo L;
Backofen, Rolf;
Siederdissen, Christian Höner zu

Publication type:

Article

CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2598, doi. 10.1093/bioinformatics/bty162

By:

Meng, Qiaozhen;
Peng, Zhenling;
Yang, Jianyi

Publication type:

Article

Cost function network-based design of protein–protein interactions: predicting changes in binding affinity.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2581, doi. 10.1093/bioinformatics/bty092

By:

Viricel, Clément;
Givry, Simon de;
Schiex, Thomas;
Barbe, Sophie

Publication type:

Article

Data mining of effect sizes from PubMed abstracts: a cross-study conceptual replication.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2698, doi. 10.1093/bioinformatics/bty153

By:

Monsarrat, Paul;
Vergnes, Jean-Noel

Publication type:

Article

ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2687, doi. 10.1093/bioinformatics/bty136

By:

Brink, Benedikt G;
Meskas, Justin;
Brinkman, Ryan R

Publication type:

Article

DeepSol: a deep learning framework for sequence-based protein solubility prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2605, doi. 10.1093/bioinformatics/bty166

By:

Khurana, Sameer;
Rawi, Reda;
Kunji, Khalid;
Chuang, Gwo-Yu;
Bensmail, Halima;
Mall, Raghvendra

Publication type:

Article

Design tools for MPRA experiments.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2682, doi. 10.1093/bioinformatics/bty150

By:

Ghazi, Andrew R;
Chen, Edward S;
Henke, David M;
Madan, Namrata;
Edelstein, Leonard C;
Shaw, Chad A

Publication type:

Article

EPIC-CoGe: managing and analyzing genomic data.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2651, doi. 10.1093/bioinformatics/bty106

By:

Nelson, Andrew D L;
Haug-Baltzell, Asher K;
Davey, Sean;
Gregory, Brian D;
Lyons, Eric

Publication type:

Article

esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2664, doi. 10.1093/bioinformatics/bty141

By:

Wei, Zheng;
Zhang, Wei;
Fang, Huan;
Li, Yanda;
Wang, Xiaowo

Publication type:

Article

SPV: a JavaScript Signaling Pathway Visualizer.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2684, doi. 10.1093/bioinformatics/bty188

By:

Calderone, Alberto;
Cesareni, Gianni

Publication type:

Article

EWAS: epigenome-wide association study software 2.0.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2657, doi. 10.1093/bioinformatics/bty163

By:

Xu, Jing;
Zhao, Linna;
Liu, Di;
Hu, Simeng;
Song, Xiuling;
Li, Jin;
Lv, Hongchao;
Duan, Lian;
Zhang, Mingming;
Jiang, Qinghua

Publication type:

Article

A global network of biomedical relationships derived from text.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2614, doi. 10.1093/bioinformatics/bty114

By:

Percha, Bethany;
Altman, Russ B

Publication type:

Article

Integrating long-range connectivity information into de Bruijn graphs.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2556, doi. 10.1093/bioinformatics/bty157

By:

Turner, Isaac;
Garimella, Kiran V;
Iqbal, Zamin;
McVean, Gil

Publication type:

Article

Learned protein embeddings for machine learning.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2642, doi. 10.1093/bioinformatics/bty178

By:

Yang, Kevin K;
Wu, Zachary;
Bedbrook, Claire N;
Arnold, Frances H

Publication type:

Article

TAPAS: tool for alternative polyadenylation site analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2521, doi. 10.1093/bioinformatics/bty110

By:

Arefeen, Ashraful;
Liu, Juntao;
Xiao, Xinshu;
Jiang, Tao

Publication type:

Article

MetaboCraft: building a Minecraft plugin for metabolomics.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2693, doi. 10.1093/bioinformatics/bty102

By:

Megalios, Anargyros;
Daly, Rónán;
Burgess, Karl

Publication type:

Article

METHCOMP: a special purpose compression platform for DNA methylation data.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2654, doi. 10.1093/bioinformatics/bty143

By:

Peng, Jianhao;
Milenkovic, Olgica;
Ochoa, Idoia

Publication type:

Article

NanoPack: visualizing and processing long-read sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2666, doi. 10.1093/bioinformatics/bty149

By:

Coster, Wouter De;
D’Hert, Svenn;
Schultz, Darrin T;
Cruts, Marc;
Broeckhoven, Christine Van

Publication type:

Article

A new method for the high-precision assessment of tumor changes in response to treatment.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2625, doi. 10.1093/bioinformatics/bty115

By:

Tar, P D;
Thacker, N A;
Babur, M;
Watson, Y;
Cheung, S;
Little, R A;
Gieling, R G;
Williams, K J;
O’Connor, J P B

Publication type:

Article

MIRA: an R package for DNA methylation-based inference of regulatory activity.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2649, doi. 10.1093/bioinformatics/bty083

By:

Lawson, John T;
Tomazou, Eleni M;
Bock, Christoph;
Sheffield, Nathan C

Publication type:

Article

Mitigating the adverse impact of batch effects in sample pattern detection.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2634, doi. 10.1093/bioinformatics/bty117

By:

Fei, Teng;
Zhang, Tengjiao;
Shi, Weiyang;
Yu, Tianwei

Publication type:

Article