Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 14

Results: 31

Exploiting and assessing multi-source data for supervised biomedical named entity recognition.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2474, doi. 10.1093/bioinformatics/bty152

By:

Galea, Dieter;
Laponogov, Ivan;
Veselkov, Kirill

Publication type:

Article

Network-based integration of multi-omics data for prioritizing cancer genes.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2441, doi. 10.1093/bioinformatics/bty148

By:

Dimitrakopoulos, Christos;
Hindupur, Sravanth Kumar;
Häfliger, Luca;
Behr, Jonas;
Montazeri, Hesam;
Hall, Michael N;
Beerenwinkel, Niko

Publication type:

Article

NGSphy: phylogenomic simulation of next-generation sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2506, doi. 10.1093/bioinformatics/bty146

By:

Escalona, Merly;
Rocha, Sara;
Posada, David

Publication type:

Article

NeSSie: a tool for the identification of approximate DNA sequence symmetries.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2503, doi. 10.1093/bioinformatics/bty142

By:

Berselli, Michele;
Lavezzo, Enrico;
Toppo, Stefano

Publication type:

Article

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2499, doi. 10.1093/bioinformatics/bty140

By:

Chen, Zhen;
Zhao, Pei;
Li, Fuyi;
Leier, André;
Marquez-Lago, Tatiana T;
Wang, Yanan;
Webb, Geoffrey I;
Smith, A Ian;
Daly, Roger J;
Chou, Kuo-Chen

Publication type:

Article

Optimality and identification of dynamic models in systems biology: an inverse optimal control framework.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2433, doi. 10.1093/bioinformatics/bty139

By:

Tsiantis, Nikolaos;
Balsa-Canto, Eva;
Banga, Julio R

Publication type:

Article

AnaCoDa: analyzing codon data with Bayesian mixture models.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2496, doi. 10.1093/bioinformatics/bty138

By:

Landerer, Cedric;
Cope, Alexander;
Zaretzki, Russell;
Gilchrist, Michael A

Publication type:

Article

Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2356, doi. 10.1093/bioinformatics/bty137

By:

Nakato, Ryuichiro;
Shirahige, Katsuhiko

Publication type:

Article

eMolTox: prediction of molecular toxicity with confidence.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2508, doi. 10.1093/bioinformatics/bty135

By:

Ji, Changge;
Svensson, Fredrik;
Zoufir, Azedine;
Bender, Andreas

Publication type:

Article

GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2465, doi. 10.1093/bioinformatics/bty130

By:

You, Ronghui;
Zhang, Zihan;
Xiong, Yi;
Sun, Fengzhu;
Mamitsuka, Hiroshi;
Zhu, Shanfeng

Publication type:

Article

BPRMeth: a flexible Bioconductor package for modelling methylation profiles.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2485, doi. 10.1093/bioinformatics/bty129

By:

Kapourani, Chantriolnt-Andreas;
Sanguinetti, Guido

Publication type:

Article

PriLive: privacy-preserving real-time filtering for next-generation sequencing.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2376, doi. 10.1093/bioinformatics/bty128

By:

Loka, Tobias P;
Tausch, Simon H;
Dabrowski, Piotr W;
Radonić, Aleksandar;
Nitsche, Andreas;
Renard, Bernhard Y

Publication type:

Article

PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2483, doi. 10.1093/bioinformatics/bty127

By:

Ambrosini, Giovanna;
Groux, Romain;
Bucher, Philipp

Publication type:

Article

FasParser2: a graphical platform for batch manipulation of tremendous amount of sequence data.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2493, doi. 10.1093/bioinformatics/bty126

By:

Sun, Yan-Bo

Publication type:

Article

AltHapAlignR: improved accuracy of RNA-seq analyses through the use of alternative haplotypes.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2401, doi. 10.1093/bioinformatics/bty125

By:

Lee, Wanseon;
Plant, Katharine;
Humburg, Peter;
Knight, Julian C

Publication type:

Article

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2515, doi. 10.1093/bioinformatics/bty124

By:

Li, Ruidong;
Qu, Han;
Wang, Shibo;
Wei, Julong;
Zhang, Le;
Ma, Renyuan;
Lu, Jianming;
Zhu, Jianguo;
Zhong, Wei-De;
Jia, Zhenyu

Publication type:

Article

CarbonylDB: a curated data-resource of protein carbonylation sites.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2518, doi. 10.1093/bioinformatics/bty123

By:

Rao, R Shyama Prasad;
Zhang, Ning;
Xu, Dong;
Møller, Ian Max

Publication type:

Article

anexVis: visual analytics framework for analysis of RNA expression.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2510, doi. 10.1093/bioinformatics/bty122

By:

Tran, Diem-Trang;
Zhang, Tian;
Stutsman, Ryan;
Might, Matthew;
Desai, Umesh R;
Kuberan, Balagurunathan

Publication type:

Article

Parallelization of MAFFT for large-scale multiple sequence alignments.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2490, doi. 10.1093/bioinformatics/bty121

By:

Nakamura, Tsukasa;
Yamada, Kazunori D;
Tomii, Kentaro;
Katoh, Kazutaka

Publication type:

Article

Extrema-weighted feature extraction for functional data.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2457, doi. 10.1093/bioinformatics/bty120

By:

van den Boom, Willem;
Mao, Callie;
Schroeder, Rebecca A;
Dunson, David B

Publication type:

Article

SECLAF: a webserver and deep neural network design tool for hierarchical biological sequence classification.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2487, doi. 10.1093/bioinformatics/bty116

By:

Szalkai, Balázs;
Grolmusz, Vince

Publication type:

Article

Updating the 97% identity threshold for 16S ribosomal RNA OTUs.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2371, doi. 10.1093/bioinformatics/bty113

By:

Edgar, Robert C

Publication type:

Article

Prediction of potential disease-associated microRNAs using structural perturbation method.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2425, doi. 10.1093/bioinformatics/bty112

By:

Zeng, Xiangxiang;
Liu, Li;
Lü, Linyuan;
Zou, Quan

Publication type:

Article

Integrative DNA copy number detection and genotyping from sequencing and array-based platforms.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2349, doi. 10.1093/bioinformatics/bty104

By:

Zhou, Zilu;
Wang, Weixin;
Wang, Li-San;
Zhang, Nancy Ruonan

Publication type:

Article

Isoform-level gene expression patterns in single-cell RNA-sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2392, doi. 10.1093/bioinformatics/bty100

By:

Vu, Trung Nghia;
Wills, Quin F;
Kalari, Krishna R;
Niu, Nifang;
Wang, Liewei;
Pawitan, Yudi;
Rantalainen, Mattias

Publication type:

Article

PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2384, doi. 10.1093/bioinformatics/bty097

By:

Hu, Yu;
Lin, Jennie;
Hu, Jian;
Hu, Gang;
Wang, Kui;
Zhang, Hanrui;
Reilly, Muredach P;
Li, Mingyao

Publication type:

Article

MatrixEpistasis: ultrafast, exhaustive epistasis scan for quantitative traits with covariate adjustment.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2341, doi. 10.1093/bioinformatics/bty094

By:

Zhu, Shijia;
Fang, Gang

Publication type:

Article

STAR Chimeric Post for rapid detection of circular RNA and fusion transcripts.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2364, doi. 10.1093/bioinformatics/bty091

By:

Akers, Nicholas K;
Schadt, Eric E;
Losic, Bojan

Publication type:

Article

FWER and FDR control when testing multiple mediators.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2418, doi. 10.1093/bioinformatics/bty064

By:

Sampson, Joshua N;
Boca, Simina M;
Moore, Steven C;
Heller, Ruth

Publication type:

Article

Principal metabolic flux mode analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2409, doi. 10.1093/bioinformatics/bty049

By:

Bhadra, Sahely;
Blomberg, Peter;
Castillo, Sandra;
Rousu, Juho

Publication type:

Article

pymzML v2.0: introducing a highly compressed and seekable gzip format.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2513, doi. 10.1093/bioinformatics/bty046

By:

Kösters, M;
Leufken, J;
Schulze, S;
Sugimoto, K;
Klein, J;
Zahedi, R P;
Hippler, M;
Leidel, S A;
Fufezan, C

Publication type:

Article