Works matching IS 13674803 AND DT 2018 AND VI 34 AND IP 1

Results: 34

Erratum: The systematic analysis of ultraconserved genomic regions in the budding yeast.

Published in:

2018

By:

Yang, Zhi-Kai;
Gao, Feng

Publication type:

Correction Notice

Corrigendum: QVZ: lossy compression of quality values.

Published in:

2018

By:

Malysa, Greg;
Hernaez, Mikel;
Ochoa, Idoia;
Rao, Milind;
Ganesan, Karthik;
Weissman, Tsachy

Publication type:

Correction Notice

Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 122, doi. 10.1093/bioinformatics/btx592

By:

Piovesan, Damiano;
Tosatto, Silvio C E

Publication type:

Article

Interactive network visualization in Jupyter notebooks: visJS2jupyter.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 126, doi. 10.1093/bioinformatics/btx581

By:

Rosenthal, Sara Brin;
Len, Julia;
Webster, Mikayla;
Gary, Aaron;
Birmingham, Amanda;
Fisch, Kathleen M

Publication type:

Article

CRISPR-RT: a web application for designing CRISPR-C2c2 crRNA with improved target specificity.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 117, doi. 10.1093/bioinformatics/btx580

By:

Zhu, Houxiang;
Richmond, Emily;
Liang, Chun

Publication type:

Article

iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 33, doi. 10.1093/bioinformatics/btx579

By:

Liu, Bin;
Yang, Fan;
Huang, De-Shuang;
Chou, Kuo-Chen

Publication type:

Article

Kfits: a software framework for fitting and cleaning outliers in kinetic measurements.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 129, doi. 10.1093/bioinformatics/btx577

By:

Rimon, Oded;
Reichmann, Dana

Publication type:

Article

PySCeSToolbox: a collection of metabolic pathway analysis tools.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 124, doi. 10.1093/bioinformatics/btx567

By:

Christensen, Carl D;
Hofmeyr, Jan-Hendrik S;
Rohwer, Johann M

Publication type:

Article

An automated tool for obtaining QSAR-ready series of compounds using semantic web technologies.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 131, doi. 10.1093/bioinformatics/btx566

By:

López-Massaguer, Oriol;
Sanz, Ferran;
Pastor, Manuel

Publication type:

Article

Enhanced guide-RNA design and targeting analysis for precise CRISPR genome editing of single and consortia of industrially relevant and non-model organisms.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 16, doi. 10.1093/bioinformatics/btx564

By:

Mendoza, Brian J;
Trinh, Cong T

Publication type:

Article

biospear: an R package for biomarker selection in penalized Cox regression.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 112, doi. 10.1093/bioinformatics/btx560

By:

Ternès, Nils;
Rotolo, Federico;
Michiels, Stefan

Publication type:

Article

SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 56, doi. 10.1093/bioinformatics/btx557

By:

Shi, Xu;
Wang, Xiao;
Wang, Tian-Li;
Hilakivi-Clarke, Leena;
Clarke, Robert;
Xuan, Jianhua

Publication type:

Article

NavMol 3.0: enabling the representation of metabolic reactions by blind users.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 120, doi. 10.1093/bioinformatics/btx556

By:

Binev, Yuri;
Peixoto, Daniela;
Pereira, Florbela;
Rodrigues, Ian;
Cavaco, Sofia;
Lobo, Ana M;
Aires-de-Sousa, João

Publication type:

Article

LightDock: a new multi-scale approach to protein--protein docking.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 49, doi. 10.1093/bioinformatics/btx555

By:

Jiménez-García, Brian;
Roel-Touris, Jorge;
Romero-Durana, Miguel;
Vidal, Miquel;
Jiménez-González, Daniel;
Fernández-Recio, Juan

Publication type:

Article

SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 137, doi. 10.1093/bioinformatics/btx553

By:

Bernhem, Kristoffer;
Brismar, Hjalmar

Publication type:

Article

Three-dimensional cardiovascular imaging-genetics: a mass univariate framework.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 97, doi. 10.1093/bioinformatics/btx552

By:

Biffi, Carlo;
Marvao, Antonio de;
Attard, Mark I;
Dawes, Timothy J W;
Whiffin, Nicola;
Bai, Wenjia;
Shi, Wenzhe;
Francis, Catherine;
Meyer, Hannah;
Buchan, Rachel

Publication type:

Article

Morphologically constrained and data informed cell segmentation of budding yeast.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 88, doi. 10.1093/bioinformatics/btx550

By:

Bakker, Elco;
Swain, Peter S;
Crane, Matthew M

Publication type:

Article

Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 114, doi. 10.1093/bioinformatics/btx547

By:

Wilks, Christopher;
Gaddipati, Phani;
Nellore, Abhinav;
Langmead, Ben

Publication type:

Article

ReMILO: reference assisted misassembly detection algorithm using short and long reads.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 24, doi. 10.1093/bioinformatics/btx524

By:

Bao, Ergude;
Song, Changjin;
Lan, Lingxiao

Publication type:

Article

CSAR: a contig scaffolding tool using algebraic rearrangements.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 109, doi. 10.1093/bioinformatics/btx543

By:

Chen, Kun-Tze;
Liu, Chia-Liang;
Huang, Shang-Hao;
Shen, Hsin-Ting;
Shieh, Yi-Kung;
Chiu, Hsien-Tai;
Lu, Chin Lung

Publication type:

Article

NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 107, doi. 10.1093/bioinformatics/btx540

By:

Singer, Jochen;
Ruscheweyh, Hans-Joachim;
Hofmann, Ariane L;
Thurnherr, Thomas;
Singer, Franziska;
Toussaint, Nora C;
Ng, Charlotte K Y;
Piscuoglio, Salvatore;
Beisel, Christian;
Christofori, Gerhard

Publication type:

Article

Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 9, doi. 10.1093/bioinformatics/btx530

By:

Zhu, Sha Joe;
Almagro-Garcia, Jacob;
McVean, Gil

Publication type:

Article

Orthologue chemical space and its influence on target prediction.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 72, doi. 10.1093/bioinformatics/btx525

By:

Mervin, Lewis H;
Bulusu, Krishna C;
Kalash, Leen;
Afzal, Avid M;
Svensson, Fredrik;
Firth, Mike A;
Barrett, Ian;
Engkvist, Ola;
Bender, Andreas

Publication type:

Article

In silico structural modeling of multiple epigenetic marks on DNA.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 41, doi. 10.1093/bioinformatics/btx516

By:

Krawczyk, Konrad;
Demharter, Samuel;
Knapp, Bernhard;
Deane, Charlotte M;
Minary, Peter

Publication type:

Article

tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 80, doi. 10.1093/bioinformatics/btx541

By:

Wei, Chih-Hsuan;
Phan, Lon;
Feltz, Juliana;
Maiti, Rama;
Hefferon, Tim;
Lu, Zhiyong

Publication type:

Article

Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 1, doi. 10.1093/bioinformatics/btx504

By:

Kaczor-Urbanowicz, Karolina Elżbieta;
Kim, Yong;
Li, Feng;
Galeev, Timur;
Kitchen, Rob R;
Gerstein, Mark;
Koyano, Kikuye;
Jeong, Sung-Hee;
Wang, Xiaoyan;
Elashoff, David

Publication type:

Article

DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 139, doi. 10.1093/bioinformatics/btx490

By:

Sun, Zhe;
Wang, Ting;
Deng, Ke;
Wang, Xiao-Feng;
Lafyatis, Robert;
Ding, Ying;
Hu, Ming;
Chen, Wei

Publication type:

Article

4D nucleome Analysis Toolbox: analysis of Hi-C data with abnormal karyotype and time series capabilities.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 104, doi. 10.1093/bioinformatics/btx484

By:

Seaman, Laura;
Rajapakse, Indika

Publication type:

Article

Faucet: streaming de novo assembly graph construction.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 147, doi. 10.1093/bioinformatics/btx471

By:

Rozov, Roye;
Goldshlager, Gil;
Halperin, Eran;
Shamir, Ron

Publication type:

Article

Irys Extract.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 134, doi. 10.1093/bioinformatics/btx437

By:

Arielly, Rani;
Ebenstein, Yuval

Publication type:

Article

An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 155, doi. 10.1093/bioinformatics/btx436

By:

Bansal, Vikas

Publication type:

Article

A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 171, doi. 10.1093/bioinformatics/btx432

By:

Liu, Xinan;
Yu, Ye;
Liu, Jinpeng;
Elliott, Corrine F;
Qian, Chen;
Liu, Jinze

Publication type:

Article

A nonparametric significance test for sampled networks.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 64, doi. 10.1093/bioinformatics/btx419

By:

Elliott, Andrew;
Leicht, Elizabeth;
Whitmore, Alan;
Reinert, Gesine;
Reed-Tsochas, Felix

Publication type:

Article

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 163, doi. 10.1093/bioinformatics/btx402

By:

Skums, Pavel;
Zelikovsky, Alex;
Singh, Rahul;
Gussler, Walker;
Dimitrova, Zoya;
Knyazev, Sergey;
Mandric, Igor;
Ramachandran, Sumathi;
Campo, David;
Jha, Deeptanshu

Publication type:

Article