Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 8

Results: 32

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1261, doi. 10.1093/bioinformatics/btw811

By:

Chu, Justin;
Mohamadi, Hamid;
Warren, René L.;
Chen Yang;
Birol, Inanç

Publication type:

Article

cBinderDB: a covalent binding agent database.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1258, doi. 10.1093/bioinformatics/btw801

By:

Jiewen Du;
Xin Yan;
Zhihong Liu;
Lu Cui;
Peng Ding;
Xiaoqing Tan;
Xiuming Li;
Huihao Zhou;
Qiong Gu;
Jun Xu

Publication type:

Article

myGenomeBrowser: building and sharing your own genome browser.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1255, doi. 10.1093/bioinformatics/btw800

By:

Carrere, Sébastien;
Gouzy, Jérôme

Publication type:

Article

SED-ML web tools: generate, modify and export standard-compliant simulation studies.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1253, doi. 10.1093/bioinformatics/btw812

By:

Bergmann, Frank T.;
Nickerson, David;
Waltemath, Dagmar;
Scharm, Martin

Publication type:

Article

bnstruct: an R package for Bayesian Network structure learning in the presence of missing data.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1250, doi. 10.1093/bioinformatics/btw807

By:

Franzin, Alberto;
Sambo, Francesco;
Di Camillo, Barbara

Publication type:

Article

MEGA-V: detection of variant gene sets in patient cohorts.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1248, doi. 10.1093/bioinformatics/btw809

By:

Gambardella, Gennaro;
Cereda, Matteo;
Benedetti, Lorena;
Ciccarelli, Francesca D.

Publication type:

Article

GWAlpha: genome-wide estimation of additive effects (alpha) based on trait quantile distribution from pool-sequencing experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1246, doi. 10.1093/bioinformatics/btw805

By:

Fournier-Level, Alexandre;
Robin, Charles;
Balding, David J.

Publication type:

Article

QCEWAS: automated quality control of results of epigenome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1243, doi. 10.1093/bioinformatics/btw766

By:

Van der Most, Peter J.;
Küpers, Leanne K.;
Snieder, Harold;
Nolte, Ilja

Publication type:

Article

switchde: inference of switch-like differential expression along single-cell trajectories.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1241, doi. 10.1093/bioinformatics/btw798

By:

Campbell, Kieran R.;
Yau, Christopher

Publication type:

Article

SPOT-ligand 2: improving structure-based virtual screening by binding-homology search on an expanded structural template library.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1238, doi. 10.1093/bioinformatics/btw829

By:

Litfin, Thomas;
Yaoqi Zhou;
Yuedong Yang

Publication type:

Article

RADER: a RApid DEcoy Retriever to facilitate decoy based assessment of virtual screening.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1235, doi. 10.1093/bioinformatics/btw783

By:

Ling Wang;
Xiaoqian Pang;
Yecheng Li;
Ziying Zhang;
Wen Tan

Publication type:

Article

AnglerFish: a webserver for defining the geometry of α-helices in membrane proteins.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1233, doi. 10.1093/bioinformatics/btw781

By:

Colledge, Matthew;
Wallace, B. A.

Publication type:

Article

phyloSkeleton: taxon selection, data retrieval and marker identification for phylogenomics.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1230, doi. 10.1093/bioinformatics/btw824

By:

Guy, Lionel

Publication type:

Article

Historian: accurate reconstruction of ancestral sequences and evolutionary rates.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1227, doi. 10.1093/bioinformatics/btw791

By:

Holmes, Ian H.

Publication type:

Article

ORCAN--a web-based meta-server for real-time detection and functional annotation of orthologs.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1224, doi. 10.1093/bioinformatics/btw825

By:

Zielezinski, Andrzej;
Dziubek, Michal;
Sliski, Jan;
Karlowski, Wojciech M.

Publication type:

Article

dAPE: a web server to detect homorepeats and follow their evolution.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1221, doi. 10.1093/bioinformatics/btw790

By:

Mier, Pablo;
Andrade-Navarro, Miguel A.

Publication type:

Article

ACTG: novel peptide mapping onto gene models.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1218, doi. 10.1093/bioinformatics/btw787

By:

Seunghyuk Choi;
Hyunwoo Kim;
Eunok Paek

Publication type:

Article

Biomartr: genomic data retrieval with R.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1216, doi. 10.1093/bioinformatics/btw821

By:

Drost, Hajk-Georg;
Paszkowski, Jerzy

Publication type:

Article

Planning bioinformatics workflows using an expert system.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1210, doi. 10.1093/bioinformatics/btw817

By:

Xiaoling Chen;
Chang, Jeffrey T.

Publication type:

Article

Analyzing user-generated online content for drug discovery: development and use of MedCrawler.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1205, doi. 10.1093/bioinformatics/btw782

By:

Helfenstein, Andreas;
Tammela, Päivi

Publication type:

Article

PhosD: inferring kinase-substrate interactions based on protein domains.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1197, doi. 10.1093/bioinformatics/btw792

By:

Gui-Min Qin;
Rui-Yi Li;
Xing-Ming Zhao

Publication type:

Article

LRSSL: predict and interpret drug-disease associations based on data integration using sparse subspace learning.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1187, doi. 10.1093/bioinformatics/btw770

By:

Xujun Liang;
Pengfei Zhang;
Lu Yan;
Ying Fu;
Fang Peng;
Lingzhi Qu;
Meiying Shao;
Yongheng Chen;
Zhuchu Chen

Publication type:

Article

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1179, doi. 10.1093/bioinformatics/btw777

By:

McCarthy, Davis J.;
Campbell, Kieran R.;
Lun, Aaron T. L.;
Wills, Quin F.

Publication type:

Article

The super-n-motifs model: a novel alignment-free approach for representing and comparing RNA secondary structures.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1169, doi. 10.1093/bioinformatics/btw773

By:

Séhi Glouzon, Jean-Pierre;
Perreault, Jean-Pierre;
Shengrui Wang

Publication type:

Article

T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1160, doi. 10.1093/bioinformatics/btw808

By:

Carbone, Ignazio;
White, James B.;
Miadlikowska, Jolanta;
Arnold, A. Elizabeth;
Miller, Mark A.;
Kauff, Frank;
U'Ren, Jana M.;
May, Georgiana;
Lutzoni, François

Publication type:

Article

Improved orthology inference with Hieranoid 2.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1154, doi. 10.1093/bioinformatics/btw774

By:

Kaduk, Mateusz;
Sonnhammer, Erik

Publication type:

Article

Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1147, doi. 10.1093/bioinformatics/btw786

By:

Shringarpure, Suyash S.;
Mathias, Rasika A.;
Hernandez, Ryan D.;
O'Connor, Timothy D.;
Szpiech, Zachary A.;
Torres, Raul;
De LaVega, Francisco M.;
Bustamante, Carlos D.;
Barnes, Kathleen C.;
Taub, Margaret A.

Publication type:

Article

CAME: identification of chromatin accessibility from nucleosome occupancy and methylome sequencing.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1139, doi. 10.1093/bioinformatics/btw785

By:

Yongjun Piao;
Seong Keon Lee;
Eun-Joon Lee;
Robertson, Keith D.;
Huidong Shi;
Keun Ho Ryu;
Jeong-Hyeon Choi

Publication type:

Article

H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1130, doi. 10.1093/bioinformatics/btw769

By:

Weicai Ye;
Ying Chen;
Yongdong Zhang;
Yuesheng Xu

Publication type:

Article

MetaDCN: meta-analysis framework for differential co-expression network detection with an application in breast cancer.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1121, doi. 10.1093/bioinformatics/btw788

By:

Li Zhu;
Ying Ding;
Cho-Yi Chen;
Lin Wang;
Zhiguang Huo;
SungHwan Kim;
Sotiriou, Christos;
Oesterreich, Steffi;
Tseng, George C.

Publication type:

Article

Structural insight to mutation effects uncover a common allosteric site in class C GPCRs.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1116, doi. 10.1093/bioinformatics/btw784

By:

Harpsøe, Kasper;
Boesgaard, Michael W.;
Munk, Christian;
Bräuner-Osborne, Hans;
Gloriam, David E.

Publication type:

Article

Defining the clonality of peripheral T cell lymphomas using RNA-seq.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1111, doi. 10.1093/bioinformatics/btw810

By:

Brown, Scott D.;
Hapgood, Greg;
Steidl, Christian;
Weng, Andrew P.;
Savage, Kerry J.;
Holt, Robert A.

Publication type:

Article