Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 7

Results: 26

RImmPort: an R/Bioconductor package that enables ready-for-analysis immunology research data.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1101, doi. 10.1093/bioinformatics/btw719

By:

Shankar, Ravi D.;
Bhattacharya, Sanchita;
Jujjavarapu, Chethan;
Andorf, Sandra;
Wiser, Jeffery A.;
Butte, Atul J.

Publication type:

Article

Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods.

Published in:

2017

By:

Yaveroğlu, Ömer Nebil;
Malod-Dognin, Noël;
Milenkovié, Tijana;
Pržulj, Nataša

Publication type:

Letter to the Editor

ontologyX: a suite of R packages for working with ontological data.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1104, doi. 10.1093/bioinformatics/btw763

By:

Greene, Daniel;
Richardson, Sylvia;
Turro, Ernest

Publication type:

Article

Green listed--a CRISPR screen tool.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1099, doi. 10.1093/bioinformatics/btw739

By:

Panda, Sudeepta Kumar;
Boddul, Sanjay V.;
Jiménez-Andrade, Guillermina Yanek;
Jiang, Long;
Kasza, Zsolt;
Fernandez-Ricaud, Luciano;
Wermeling, Fredrik

Publication type:

Article

Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1096, doi. 10.1093/bioinformatics/btw731

By:

Balaur, Irina;
Mazein, Alexander;
Saqi, Mansoor;
Lysenko, Artem;
Rawlings, Christopher J.;
Auffray, Charles

Publication type:

Article

pHMM-tree: phylogeny of profile hidden Markov models.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1093, doi. 10.1093/bioinformatics/btw779

By:

Luyang Huo;
Han Zhang;
Xueting Huo;
Yasong Yang;
Xueqiong Li;
Yanbin Yin

Publication type:

Article

MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1090, doi. 10.1093/bioinformatics/btw750

By:

Wei Zhou;
Ruilin Li;
Shuo Yuan;
Chang Chun Liu;
Shaowen Yao;
Jing Luo;
Beifang Niu

Publication type:

Article

RECKONER: read error corrector based on KMC.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1086, doi. 10.1093/bioinformatics/btw746

By:

Długosz, Maciej;
Deorowicz, Sebastian

Publication type:

Article

SVScore: an impact prediction tool for structural variation.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1083, doi. 10.1093/bioinformatics/btw789

By:

Ganel, Liron;
Abel, Haley J.;
Consortium, FinMetSeq;
Hall, Ira M.

Publication type:

Article

PanViz: interactive visualization of the structure of functionally annotated pangenomes.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1081, doi. 10.1093/bioinformatics/btw761

By:

Pedersen, Thomas Lin;
Nookaew, Intawat;
Ussery, David Wayne;
Månsson, Maria

Publication type:

Article

Automated neuron tracing using probability hypothesis density filtering.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1073, doi. 10.1093/bioinformatics/btw751

By:

Radojević, Miroslav;
Meijering, Erik

Publication type:

Article

Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1064, doi. 10.1093/bioinformatics/btw749

By:

Teodoro, George;
Kurç, Tahsin M.;
Taveira, Luís F. R.;
Melo, Alba C. M. A.;
Yi Gao;
Jun Kong;
Saltz, Joel H.

Publication type:

Article

TRFBA: an algorithm to integrate genome-scale metabolic and transcriptional regulatory networks with incorporation of expression data.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1057, doi. 10.1093/bioinformatics/btw772

By:

Motamedian, Ehsan;
Mohammadi, Maryam;
Shojaosadati, Seyed Abbas;
Heydari, Mona

Publication type:

Article

Parameter estimation for dynamical systems with discrete events and logical operations.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1049, doi. 10.1093/bioinformatics/btw764

By:

Fröhlich, Fabian;
Theis, Fabian J.;
Rädler, Joachim O.;
Hasenauer, Jan

Publication type:

Article

Advanced Boolean modeling of biological networks applied to systems pharmacology.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1040, doi. 10.1093/bioinformatics/btw747

By:

Irurzun-Arana, Itziar;
Martín Pastor, José;
Trocóniz, Iñaki F.;
Gómez-Mantilla, José David

Publication type:

Article

Context-sensitive network-based disease genetics prediction and its implications in drug discovery.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1031, doi. 10.1093/bioinformatics/btw737

By:

Yang Chen;
Rong Xu

Publication type:

Article

RENT+: an improved method for inferring local genealogical trees from haplotypes with recombination.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1021, doi. 10.1093/bioinformatics/btw735

By:

Mirzaei, Sajad;
Yufeng Wu

Publication type:

Article

Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1014, doi. 10.1093/bioinformatics/btw767

By:

Negi, Surendra S.;
Braun, Werner

Publication type:

Article

Statistical inference of protein structural alignments using information and compression.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1005, doi. 10.1093/bioinformatics/btw757

By:

Collier, James H.;
Allison, Lloyd;
Lesk, Arthur M.;
Stuckey, Peter J.;
de la Banda, Maria Garcia;
Konagurthu, Arun S.

Publication type:

Article

The structural bioinformatics library: modeling in biomolecular science and beyond.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 997, doi. 10.1093/bioinformatics/btw752

By:

Cazals, Frédéric;
Dreyfus, Tom

Publication type:

Article

A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 988, doi. 10.1093/bioinformatics/btw728

By:

Umu, Sinan Uğur;
Gardner, Paul P.

Publication type:

Article

Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 980, doi. 10.1093/bioinformatics/btw778

By:

Jacox, Edwin;
Weller, Mathias;
Tannier, Eric;
Scornavacca, Celine

Publication type:

Article

Fast and accurate phylogeny reconstruction using filtered spaced-word matches.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 971, doi. 10.1093/bioinformatics/btw776

By:

Leimeister, Chris-André;
Sohrabi-Jahromi, Salma;
Morgenstern, Burkhard

Publication type:

Article

Improved VCF normalization for accurate VCF comparison.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 964, doi. 10.1093/bioinformatics/btw748

By:

Bayat, Arash;
Gaëta, Bruno;
Ignjatovic, Aleksandar;
Parameswaran, Sri

Publication type:

Article

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 956, doi. 10.1093/bioinformatics/btw740

By:

Quach, Bryan;
Furey, Terrence S.

Publication type:

Article

Feature selection using a one dimensional naïve Bayes' classifier increases the accuracy of support vector machine classification of CDR3 repertoires.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 951, doi. 10.1093/bioinformatics/btw771

By:

Cinelli, Mattia;
Yuxin Sun;
Best, Katharine;
Heather, James M.;
Reich-Zeliger, Shlomit;
Shifrut, Eric;
Friedman, Nir;
Shawe-Taylor, John;
Chain, Benny

Publication type:

Article