Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 5

Results: 33

SarConfoCal: simultaneous sarcomere length and cytoplasmic calcium measurements for laser scanning confocal microscopy images.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 789, doi. 10.1093/bioinformatics/btw754

By:

Pasqualin, Côme;
Gannier, François;
Angèle Yu;
Malécot, Claire O.;
Bredeloux, Pierre;
Maupoil, Véronique

Publication type:

Article

SeqLib: a C+ + API for rapid BAM manipulation, sequence alignment and sequence assembly.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 751, doi. 10.1093/bioinformatics/btw741

By:

Wala, Jeremiah;
Beroukhim, Rameen

Publication type:

Article

Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 767, doi. 10.1093/bioinformatics/btw732

By:

Andrian Yang;
Troup, Michael;
Peijie Lin;
Ho, JoshuaW. K.

Publication type:

Article

LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 764, doi. 10.1093/bioinformatics/btw729

By:

Specht, Alicia T.;
Jun Li

Publication type:

Article

cerebroViz: an R package for anatomical visualization of spatiotemporal brain data.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 762, doi. 10.1093/bioinformatics/btw726

By:

Bahl, Ethan;
Koomar, Tanner;
Michaelson, Jacob J.

Publication type:

Article

Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 782, doi. 10.1093/bioinformatics/btw725

By:

Zakrzewski, Martha;
Proietti, Carla;
Ellis, Jonathan J.;
Hasan, Shihab;
Brion, Marie-Jo;
Berger, Bernard;
Krause, Lutz

Publication type:

Article

fCCAC: functional canonical correlation analysis to evaluate covariance between nucleic acid sequencing datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 746, doi. 10.1093/bioinformatics/btw724

By:

Madrigal, Pedro

Publication type:

Article

SINE_scan: an efficient tool to discover short interspersed nuclear elements (SINEs) in large-scale genomic datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 743, doi. 10.1093/bioinformatics/btw718

By:

Hongliang Mao;
Hao Wang

Publication type:

Article

FUEL-mLoc: feature-unified prediction and explanation of multi-localization of cellular proteins in multiple organisms.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 749, doi. 10.1093/bioinformatics/btw717

By:

Shibiao Wan;
Man-Wai Mak;
Sun-Yuan Kung

Publication type:

Article

Expanding the toolkit for membrane protein modeling in Rosetta.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 754, doi. 10.1093/bioinformatics/btw716

By:

Leman, Julia Koehler;
Mueller, Benjamin K.;
Gray, Jeffrey J.

Publication type:

Article

A novel approach based on KATZ measure to predict associations of human microbiota with non-infectious diseases.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 733, doi. 10.1093/bioinformatics/btw715

By:

Xing Chen;
Yu-An Huang;
Zhu-Hong You;
Gui-Ying Yan;
Xue-SongWang

Publication type:

Article

tranSMART-XNAT Connector tranSMART-XNAT connector—image selection based on clinical phenotypes and genetic profiles.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 787, doi. 10.1093/bioinformatics/btw714

By:

Sijin He;
May Yong;
Matthews, Paul M.;
Yike Guo

Publication type:

Article

Accelerating Bayesian inference for evolutionary biology models.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 669, doi. 10.1093/bioinformatics/btw712

By:

Meyer, Xavier;
Chopard, Bastien;
Salamin, Nicolas

Publication type:

Article

PhagesDB: the actinobacteriophage database.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 784, doi. 10.1093/bioinformatics/btw711

By:

Russell, Daniel A.;
Hatfull, Graham F.

Publication type:

Article

Agent-based re-engineering of ErbB signaling: a modeling pipeline for integrative systems biology.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 726, doi. 10.1093/bioinformatics/btw709

By:

Das, Arya A.;
Darsana, T. Ajayakumar;
Jacob, Elizabeth

Publication type:

Article

SPADEVizR: an R package for visualization, analysis and integration of SPADE results.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 779, doi. 10.1093/bioinformatics/btw708

By:

Gautreau, Guillaume;
Pejoski, David;
Le Grand, Roger;
Cosma, Antonio;
Beignon, Anne-Sophie;
Tchitchek, Nicolas

Publication type:

Article

Statistical significance based on length and position of the local score in a model of i.i.d. sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 654, doi. 10.1093/bioinformatics/btw699

By:

Lagnoux, Agnès;
Mercier, Sabine;
Vallois, Pierre

Publication type:

Article

CymeR: cytometry analysis using KNIME, docker and R.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 776, doi. 10.1093/bioinformatics/btw707

By:

Muchmore, B.;
Alarcón-Riquelme, M. E.

Publication type:

Article

Robust parameter estimation for dynamical systems from outlier-corrupted data.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 718, doi. 10.1093/bioinformatics/btw703

By:

Maier, Corinna;
Loos, Carolin;
Hasenauer, Jan

Publication type:

Article

GENIUS: web server to predict local gene networks and key genes for biological functions.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 760, doi. 10.1093/bioinformatics/btw702

By:

Puelma, Tomas;
Araus, Viviana;
Canales, Javier;
Vidal, Elena A.;
Cabello, Juan M.;
Soto, Alvaro;
Gutiérrez, Rodrigo A.

Publication type:

Article

ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negatives.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 661, doi. 10.1093/bioinformatics/btw701

By:

Jyun-Rong Wang;
Wen-Lin Huang;
Ming-Ju Tsai;
Kai-Ti Hsu;
Hui-Ling Huang;
Shinn-Ying Ho

Publication type:

Article

Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 710, doi. 10.1093/bioinformatics/btw700

By:

Andrews, Steven S.

Publication type:

Article

A novel non-parametric method for uncertainty evaluation of correlation-based molecular signatures: its application on PAM50 algorithm.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 693, doi. 10.1093/bioinformatics/btw704

By:

Fresno, Cristóbal;
Alexis González, Germán;
Alejandra Merino, Gabriela;
Georgina Flesia, Ana;
Luis Podhajcer, Osvaldo;
Sabina Llera, Andrea;
Andrés Fernández, Elmer

Publication type:

Article

MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 773, doi. 10.1093/bioinformatics/btw697

By:

Rodriguez-Martinez, Andrea;
Ayala, Rafael;
Posma, Joram M.;
Neves, Ana L.;
Gauguier, Dominique;
Nicholson, Jeremy K.;
Dumas, Marc-Emmanuel

Publication type:

Article

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 740, doi. 10.1093/bioinformatics/btw688

By:

Baskin, Elizabeth;
Farouni, Rick;
Mathé, Ewy A.

Publication type:

Article

A pipeline for local assembly of minisatellite alleles from single-molecule sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 650, doi. 10.1093/bioinformatics/btw687

By:

Ogeh, Denye;
Badge, Richard

Publication type:

Article

Xenolog classification.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 640, doi. 10.1093/bioinformatics/btw686

By:

Darby, Charlotte A.;
Stolzer, Maureen;
Ropp, Patrick J.;
Barker, Daniel;
Durand, Dannie

Publication type:

Article

PyBoolNet: a python package for the generation, analysis and visualization of boolean networks.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 770, doi. 10.1093/bioinformatics/btw682

By:

Klarner, Hannes;
Streck, Adam;
Siebert, Heike

Publication type:

Article

Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 685, doi. 10.1093/bioinformatics/btw678

By:

Hanson, Jack;
Yuedong Yang;
Paliwal, Kuldip;
Yaoqi Zhou

Publication type:

Article

Network-based analysis of omics data: the LEAN method.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 701, doi. 10.1093/bioinformatics/btw676

By:

Gwinner, Frederik;
Boulday, Gwénola;
Vandiedonck, Claire;
Arnould, Minh;
Cardoso, Cécile;
Nikolayeva, Iryna;
Guitart-Pla, Oriol;
Denis, Cécile V.;
Christophe, Olivier D.;
Beghain, Johann;
Tournier-Lasserve, Elisabeth;
Schwikowski, Benno

Publication type:

Article

LRFragLib: an effective algorithm to identify fragments for de novo protein structure prediction.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 677, doi. 10.1093/bioinformatics/btw668

By:

Tong Wang;
Yuedong Yang;
Yaoqi Zhou;
Haipeng Gong

Publication type:

Article

ImpulseDE: detection of differentially expressed genes in time series data using impulse models.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 757, doi. 10.1093/bioinformatics/btw665

By:

Sander, Jil;
Schultze, Joachim L.;
Yosef, Nir

Publication type:

Article

FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 631, doi. 10.1093/bioinformatics/btw600

By:

Vachaspati, Pranjal;
Warnow, Tandy

Publication type:

Article