Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 4

Results: 41

ReconMap: an interactive visualization of human metabolism.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 605, doi. 10.1093/bioinformatics/btw667

By:

Noronha, Alberto;
Daníelsdóttir, Anna Dröfn;
Gawron, Piotr;
Jóhannsson, Freyr;
Jónsdóttir, Soffía;
Jarlsson, Sindri;
Gunnarsson, Jón Pétur;
Brynjólfsson, Sigurður;
Schneider, Reinhard;
Thiele, Ines;
Fleming, Ronan M. T.

Publication type:

Article

BoostGAPFILL: improving the fidelity of metabolic network reconstructions through integrated constraint and pattern-based methods.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 608, doi. 10.1093/bioinformatics/btw684

By:

Oyetunde, Tolutola;
Muhan Zhang;
Yixin Chen;
Yinjie Tang;
Cynthia Lo

Publication type:

Article

ViSiBooL--visualization and simulation of Boolean networks with temporal constraints.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 601, doi. 10.1093/bioinformatics/btw661

By:

Schwab, Julian;
Burkovski, Andre;
Siegle, Lea;
Müssel, Christoph;
Kestler, Hans A.

Publication type:

Article

ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 629, doi. 10.1093/bioinformatics/btw681

By:

Hiner, Mark C.;
Rueden, Curtis T.;
Eliceiri, Kevin W.

Publication type:

Article

geneAttribution: trait agnostic identification of candidate genes associated with noncoding variation.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 599, doi. 10.1093/bioinformatics/btw698

By:

Wuster, Arthur;
Chang, Diana;
Behrens, Timothy W.;
Bhangale, Tushar R.

Publication type:

Article

Big Data Smart Socket (BDSS): a system that abstracts data transfer habits from end users.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 627, doi. 10.1093/bioinformatics/btw679

By:

Watts, Nicholas A.;
Feltus, Frank A.

Publication type:

Article

HYSYS: have you swapped your samples?

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 596, doi. 10.1093/bioinformatics/btw685

By:

Schröder, Jan;
Corbin, Vincent;
Papenfuss, Anthony T.

Publication type:

Article

The Ark: a customizable web-based data management tool for health and medical research.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 624, doi. 10.1093/bioinformatics/btw675

By:

Bickerstaffe, Adrian;
Ranaweera, Thilina;
Endersby, Travis;
Ellis, Christopher;
Maddumarachchi, Sanjaya;
Gooden, George E.;
White, Paul;
Moses, Eric K.;
Hewitt, Alex W.;
Hopper, John L.

Publication type:

Article

KODAMA: an R package for knowledge discovery and data mining.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 621, doi. 10.1093/bioinformatics/btw705

By:

Cacciatore, Stefano;
Tenori, Leonardo;
Luchinat, Claudio;
Bennett, Phillip R.;
MacIntyre, David A.

Publication type:

Article

tcpl: the ToxCast pipeline for high-throughput screening data.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 618, doi. 10.1093/bioinformatics/btw680

By:

Filer, Dayne L.;
Kothiya, Parth;
Setzer, R. Woodrow;
Judson, Richard S.;
Martin, Matthew T.

Publication type:

Article

Web-igloo: a web based platform for multivariate data visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 615, doi. 10.1093/bioinformatics/btw669

By:

Kuntal, Bhusan K.;
Mande, Sharmila S.

Publication type:

Article

EGAD: ultra-fast functional analysis of gene networks.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 612, doi. 10.1093/bioinformatics/btw695

By:

Ballouz, Sara;
Weber, Melanie;
Pavlidis, Paul;
Gillis, Jesse

Publication type:

Article

CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 566, doi. 10.1093/bioinformatics/btw653

By:

Shah, Ankeeta;
Yingzhi Qian;
Weyn-Vanhentenryck, Sebastien M.;
Chaolin Zhang

Publication type:

Article

Visualizing the geography of genetic variants.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 594, doi. 10.1093/bioinformatics/btw643

By:

Marcus, Joseph H.;
Novembre, John

Publication type:

Article

stAI<sub>calc</sub>: tRNA adaptation index calculator based on species-specific weights.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 589, doi. 10.1093/bioinformatics/btw647

By:

Sabi, Renana;
Daniel, Renana Volvovitch;
Tuller, Tamir

Publication type:

Article

QAcon: single model quality assessment using protein structural and contact information with machine learning techniques.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 586, doi. 10.1093/bioinformatics/btw694

By:

Renzhi Cao;
Adhikari, Badri;
Bhattacharya, Debswapna;
Miao Sun;
Jie Hou;
Jianlin Cheng

Publication type:

Article

JADOPPT: java based AutoDock preparing and processing tool.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 583, doi. 10.1093/bioinformatics/btw677

By:

García-Pérez, Carlos;
Peláez, Rafael;
Therón, Roberto;
López-Pérez, José Luis

Publication type:

Article

miRNAmeConverter: an R/bioconductor package for translating mature miRNA names to different miRBase versions.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 592, doi. 10.1093/bioinformatics/btw660

By:

Haunsberger, Stefan J.;
Connolly, Niamh M. C.;
Prehn, Jochen H. M.

Publication type:

Article

MIToS.jl: mutual information tools for protein sequence analysis in the Julia language.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 564, doi. 10.1093/bioinformatics/btw646

By:

Zea, Diego J.;
Anfossi, Diego;
Nielsen, Morten;
Marino-Buslje, Cristina

Publication type:

Article

Controlling the joint local false discovery rate is more powerful than meta-analysis methods in joint analysis of summary statistics from multiple genome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 500, doi. 10.1093/bioinformatics/btw690

By:

Wei Jiang;
Weichuan Yu

Publication type:

Article

seXY: a tool for sex inference from genotype arrays.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 561, doi. 10.1093/bioinformatics/btw696

By:

Qian, David C.;
Busam, Jonathan A.;
Xiangjun Xiao;
O'Mara, Tracy A.;
Eeles, Rosalind A.;
Schumacher, Frederick R.;
Phelan, Catherine M.;
Amos, Christopher I.

Publication type:

Article

InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 580, doi. 10.1093/bioinformatics/btw689

By:

Eggeling, Ralf;
Grosse, Ivo;
Grau, Jan

Publication type:

Article

gargammel: a sequence simulator for ancient DNA.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 577, doi. 10.1093/bioinformatics/btw670

By:

Renaud, Gabriel;
Hanghøj, Kristian;
Willerslev, Eske;
Orlando, Ludovic

Publication type:

Article

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 574, doi. 10.1093/bioinformatics/btw663

By:

Mapleson, Daniel;
Accinelli, Gonzalo Garcia;
Kettleborough, George;
Wright, Jonathan;
Clavijo, Bernardo J.

Publication type:

Article

yMap: an automated method to map yeast variants to protein modifications and functional regions.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 571, doi. 10.1093/bioinformatics/btw658

By:

Arslan, Ahmed;
van Noort, Vera

Publication type:

Article

Rabifier2: an improved bioinformatic classifier of Rab GTPases.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 568, doi. 10.1093/bioinformatics/btw654

By:

Surkont, Jaroslaw;
Diekmann, Yoan;
Pereira-Leal, José B.

Publication type:

Article

Efficient detection of differentially methylated regions using DiMmeR.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 549, doi. 10.1093/bioinformatics/btw657

By:

Almeida, Diogo;
Skov, Ida;
Silva, Artur;
Vandin, Fabio;
Qihua Tan;
Röttger, Richard;
Baumbach, Jan

Publication type:

Article

gsrc: an R package for genome structure rearrangement calling.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 545, doi. 10.1093/bioinformatics/btw648

By:

Grandke, Fabian;
Snowdon, Rod;
Samans, Birgit

Publication type:

Article

Fast motif matching revisited: high-order PWMs, SNPs and indels.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 514, doi. 10.1093/bioinformatics/btw683

By:

Korhonen, Janne H.;
Palin, Kimmo;
Taipale, Jussi;
Ukkonen, Esko

Publication type:

Article

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 558, doi. 10.1093/bioinformatics/btw691

By:

Fortin, Jean-Philippe;
Triche Jr, Timothy J.;
Hansen, Kasper D.

Publication type:

Article

INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 555, doi. 10.1093/bioinformatics/btw674

By:

Jin Zhang;
Mardis, Elaine R.;
Maher, Christopher A.

Publication type:

Article

FractBias: a graphical tool for assessing fractionation bias following polyploidy.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 552, doi. 10.1093/bioinformatics/btw666

By:

Joyce, Blake L.;
Haug-Baltzell, Asher;
Davey, Sean;
Bomhoff, Matthew;
Schnable, James C.;
Lyons, Eric

Publication type:

Article

Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 491, doi. 10.1093/bioinformatics/btw672

By:

Hocking, Toby Dylan;
Goerner-Potvin, Patricia;
Morin, Andreanne;
Xiaojian Shao;
Pastinen, Tomi;
Bourque, Guillaume

Publication type:

Article

Cancer driver gene discovery through an integrative genomics approach in a non-parametric Bayesian framework.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 483, doi. 10.1093/bioinformatics/btw662

By:

Hai Yang;
Qiang Wei;
Xue Zhong;
Hushan Yang;
Bingshan Li

Publication type:

Article

Isomorphic semantic mapping of variant call format (VCF2RDF).

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 547, doi. 10.1093/bioinformatics/btw652

By:

Penha, Emanuel Diego S.;
Iriabho, Egiebade;
Dussaq, Alex;
de Oliveira, Diana Magalhães;
Almeida, Jonas S.

Publication type:

Article

RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 537, doi. 10.1093/bioinformatics/btw655

By:

Alkan, Ferhat;
Erten, Cesim

Publication type:

Article

Transfer learning across ontologies for phenome-genome association prediction.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 529, doi. 10.1093/bioinformatics/btw649

By:

Petegrosso, Raphael;
Sunho Park;
Tae Hyun Hwang;
Rui Kuang

Publication type:

Article

Recycler: an algorithm for detecting plasmids from de novo assembly graphs.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 475, doi. 10.1093/bioinformatics/btw651

By:

Rozov, Roye;
Kav, Aya Brown;
Bogumil, David;
Shterzer, Naama;
Halperin, Eran;
Mizrahi, Itzhak;
Shamir, Ron

Publication type:

Article

Imputing gene expression to maximize platform compatibility.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 522, doi. 10.1093/bioinformatics/btw664

By:

Weizhuang Zhou;
Lichy Han;
Altman, Russ B.

Publication type:

Article

Uncertainty estimation of predictions of peptides' chromatographic retention times in shotgun proteomics.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 508, doi. 10.1093/bioinformatics/btw619

By:

Afkham, Heydar Maboudi;
Xuanbin Qiu;
The, Matthew;
Käll, Lukas

Publication type:

Article

LoFtool: a gene intolerance score based on loss-of-function variants in 60 706 individuals.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 471, doi. 10.1093/bioinformatics/btv602

By:

Fadista, João;
Oskolkov, Nikolay;
Hansson, Ola;
Groop, Leif

Publication type:

Article