Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 3

Results: 30

bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 334, doi. 10.1093/bioinformatics/btw629

By:

Shahmuradov, Ilham Ayub;
Razali, Rozaimi Mohamad;
Bougouffa, Salim;
Radovanovic, Aleksandar;
Bajic, Vladimir B.

Publication type:

Article

Mutual enrichment in aggregated ranked lists with applications to gene expression regulation.

Published in:: 2017
Publication type:: Correction Notice

SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 347, doi. 10.1093/bioinformatics/btw656

By:

Savojardo, Castrense;
Martelli, Pier Luigi;
Fariselli, Piero;
Casadio, Rita

Publication type:

Article

Improving cross-study prediction through addon batch effect adjustment or addon normalization.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 397, doi. 10.1093/bioinformatics/btw650

By:

Hornung, Roman;
Causeur, David;
Bernau, Christoph;
Boulesteix, Anne-Laure

Publication type:

Article

CloudPhylo: a fast and scalable tool for phylogeny reconstruction.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 438, doi. 10.1093/bioinformatics/btw645

By:

Xingjian Xu;
Zhaohua Ji;
Zhang Zhang

Publication type:

Article

iATC-mISF: a multi-label classifier for predicting the classes of anatomical therapeutic chemicals.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 341, doi. 10.1093/bioinformatics/btw644

By:

Xiang Cheng;
Shu-Guang Zhao;
Xuan Xiao;
Kuo-Chen Chou

Publication type:

Article

simPATHy: a new method for simulating data from perturbed biological PATHways.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 456, doi. 10.1093/bioinformatics/btw642

By:

Salviato, Elisa;
Djordjilović, Vera;
Chiogna, Monica;
Romualdi, Chiara

Publication type:

Article

Assocplots: a Python package for static and interactive visualization of multiple-group GWAS results.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 432, doi. 10.1093/bioinformatics/btw641

By:

Khramtsova, Ekaterina A.;
Stranger, Barbara E.

Publication type:

Article

CIIPro: a new read-across portal to fill data gaps using public large-scale chemical and biological data.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 464, doi. 10.1093/bioinformatics/btw640

By:

Russo, Daniel P.;
Kim, Marlene T.;
Wenyi Wang;
Pinolini, Daniel;
Shende, Sunil;
Strickland, Judy;
Hartung, Thomas;
Hao Zhu

Publication type:

Article

LDAP: a web server for lncRNA-disease association prediction.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 458, doi. 10.1093/bioinformatics/btw639

By:

Wei Lan;
Min Li;
Kaijie Zhao;
Jin Liu;
Fang-Xiang Wu;
Yi Pan;
Jianxin Wang

Publication type:

Article

PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 444, doi. 10.1093/bioinformatics/btw638

By:

Janson, Giacomo;
Chengxin Zhang;
Prado, Maria Giulia;
Paiardini, Alessandro

Publication type:

Article

Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 453, doi. 10.1093/bioinformatics/btw636

By:

Bianco, Luca;
Riccadonna, Samantha;
Lavezzo, Enrico;
Falda, Marco;
Formentin, Elide;
Cavalieri, Duccio;
Toppo, Stefano;
Fontana, Paolo

Publication type:

Article

QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 450, doi. 10.1093/bioinformatics/btw635

By:

Yu Zhang;
Juan Xie;
Jinyu Yang;
Fennell, Anne;
Chi Zhang;
Qin Ma

Publication type:

Article

ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 435, doi. 10.1093/bioinformatics/btw634

By:

Bystry, Vojtech;
Reigl, Tomas;
Krejci, Adam;
Demko, Martin;
Hanakova, Barbora;
Grioni, Andrea;
Knecht, Henrik;
Schlitt, Max;
Dreger, Peter;
Sellner, Leopold;
Herrmann, Dietrich;
Pingeon, Marine;
Boudjoghra, Myriam;
Rijntjes, Jos;
Pott, Christiane;
Langerak, Anton W.;
Groenen, Patricia J. T. A.;
Davi, Frederic;
Brüggemann, Monika;
Darzentas, Nikos

Publication type:

Article

P3BSseq: parallel processing pipeline software for automatic analysis of bisulfite sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 428, doi. 10.1093/bioinformatics/btw633

By:

Luu, Phuc-Loi;
Gerovska, Daniela;
Arrospide-Elgarresta, Mikel;
Retegi-Carrión, Sugoi;
Schöler, Hans R.;
Araúzo-Bravo, Marcos J.

Publication type:

Article

State aggregation for fast likelihood computations in molecular evolution.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 354, doi. 10.1093/bioinformatics/btw632

By:

Davydov, Iakov I.;
Robinson-Rechavi, Marc;
Salamin, Nicolas

Publication type:

Article

BASIC: BCR assembly from single cells.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 425, doi. 10.1093/bioinformatics/btw631

By:

Canzar, Stefan;
Neu, Karlynn E.;
Qingming Tang;
Wilson, Patrick C.;
Khan, Aly A.

Publication type:

Article

Pro54DB: a database for experimentally verified sigma-54 promoters.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 467, doi. 10.1093/bioinformatics/btw630

By:

Zhi-Yong Liang;
Hong-Yan Lai;
Huan Yang;
Chang-Jian Zhang;
Hui Yang;
Huan-Huan Wei;
Xin-Xin Chen;
Ya-Wei Zhao;
Zhen-Dong Su;
Wen-Chao Li;
En-Ze Deng;
Hua Tang;
Wei Chen;
Hao Lin

Publication type:

Article

Granular clustering of de novo protein models.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 390, doi. 10.1093/bioinformatics/btw628

By:

Guzenko, Dmytro;
Strelkov, Sergei V.

Publication type:

Article

SEQualyzer: interactive tool for quality control and exploratory analysis of high-throughput RNA structural profiling data.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 441, doi. 10.1093/bioinformatics/btw627

By:

Choudhary, Krishna;
Luyao Ruan;
Fei Deng;
Shih, Nathan;
Aviran, Sharon

Publication type:

Article

A Cytoscape app for motif enumeration with ISMAGS.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 461, doi. 10.1093/bioinformatics/btw626

By:

Van Parys, Thomas;
Melckenbeeck, Ine;
Houbraken, Maarten;
Audenaert, Pieter;
Colle, Didier;
Pickavet, Mario;
Demeester, Piet;
de Peer, Yves Van

Publication type:

Article

Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 327, doi. 10.1093/bioinformatics/btw625

By:

Sufang Wang;
Gribskov, Michael

Publication type:

Article

The START App: a web-based RNAseq analysis and visualization resource.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 447, doi. 10.1093/bioinformatics/btw624

By:

Nelson, JonathanW.;
Sklenar, Jiri;
Barnes, Anthony P.;
Minnier, Jessica

Publication type:

Article

Combining multiple tools outperforms individual methods in gene set enrichment analyses.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 414, doi. 10.1093/bioinformatics/btw623

By:

Alhamdoosh, Monther;
Ng, Milica;
Wilson, Nicholas J.;
Sheridan, Julie M.;
Huy Huynh;
Wilson, Michael J.;
Ritchie, Matthew E.

Publication type:

Article

Simulation-based estimation of branching models for LTR retrotransposons.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 320, doi. 10.1093/bioinformatics/btw622

By:

Moulin, Serge;
Seux, Nicolas;
Chrétien, Stéphane;
Guyeux, Christophe;
Lerat, Emmanuelle

Publication type:

Article

Sequence-structure relations of biopolymers.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 382, doi. 10.1093/bioinformatics/btw621

By:

Barrett, Christopher;
Huang, Fenix W.;
Reidys, Christian M.

Publication type:

Article

OMBlast: alignment tool for optical mapping using a seed-and-extend approach.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 311, doi. 10.1093/bioinformatics/btw620

By:

King-Yung Leung, Alden;
Tsz-Piu Kwok;
Wan, Raymond;
Ming Xiao;
Pui-Yan Kwok;
Yip, Kevin Y.;
Ting-Fung Chan

Publication type:

Article

Comparing co-evolution methods and their application to template-free protein structure prediction.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 373, doi. 10.1093/bioinformatics/btw618

By:

de Oliveira, Saulo Henrique Pires;
Jiye Shi;
Deane, Charlotte M.

Publication type:

Article

Site of metabolism prediction for oxidation reactions mediated by oxidoreductases based on chemical bond.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 363, doi. 10.1093/bioinformatics/btw617

By:

Shuaibing He;
Manman Li;
Xiaotong Ye;
Hongyu Wang;
Wenkang Yu;
Wenjing He;
Yun Wang;
Yanjiang Qiao

Publication type:

Article

DEF: an automated dead-end filling approach based on quasi-endosymbiosis.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 405, doi. 10.1093/bioinformatics/btw604

By:

Lili Liu;
Zijun Zhang;
Taotao Sheng;
Ming Chen

Publication type:

Article