Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 24

Results: 32

iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data.

Published in:: 2017
Publication type:: Correction Notice

DeepLoc: prediction of protein subcellular localization using deep learning.

Published in:: 2017
Publication type:: Correction Notice

popSTR: population-scale detection of STR variants.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4041, doi. 10.1093/bioinformatics/btw568

By:

Kristmundsdóttir, Snædís;
Sigurpálsdóttir, Brynja D.;
Kehr, Birte;
Halldórsson, Bjarni V.

Publication type:

Article

Rail-RNA: scalable analysis of RNA-seq splicing and coverage.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4033, doi. 10.1093/bioinformatics/btw575

By:

Nellore, Abhinav;
Collado-Torres, Leonardo;
Jaffe, Andrew E.;
Alquicira-Hernández, José;
Wilks, Christopher;
Pritt, Jacob;
Morton, James;
Leek, Jeffrey T.;
Langmead, Ben

Publication type:

Article

TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4024, doi. 10.1093/bioinformatics/btw609

By:

Minkin, Ilia;
Pham, Son;
Medvedev, Paul

Publication type:

Article

Genotyping inversions and tandem duplications.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4015, doi. 10.1093/bioinformatics/btx020

By:

Ebler, Jana;
Schönhuth, Alexander;
Marschall, Tobias

Publication type:

Article

Enabling reproducible real-time quantitative PCR research: the RDML package.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4012, doi. 10.1093/bioinformatics/btx528

By:

Rödiger, Stefan;
Burdukiewicz, Michał;
Spiess, Andrej-Nikolai;
Blagodatskikh, Konstantin

Publication type:

Article

ncDR: a comprehensive resource of non-coding RNAs involved in drug resistance.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4010, doi. 10.1093/bioinformatics/btx523

By:

Enyu Dai;
Feng Yang;
Jing Wang;
Xu Zhou;
Qian Song;
Weiwei An;
Lihong Wang;
Wei Jiang

Publication type:

Article

PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4007, doi. 10.1093/bioinformatics/btx499

By:

Gloaguen, Yoann;
Morton, Fraser;
Daly, Rónán;
Gurden, Ross;
Rogers, Simon;
Wandy, Joe;
Wilson, David;
Barrett, Michael;
Burgess, Karl

Publication type:

Article

psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4004, doi. 10.1093/bioinformatics/btx506

By:

Gutiérrez-Sacristán, Alba;
Hernández-Ferrer, Carles;
González, Juan R.;
Furlong, Laura I.

Publication type:

Article

clustComp, a bioconductor package for the comparison of clustering results.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4001, doi. 10.1093/bioinformatics/btx532

By:

Torrente, Aurora;
Brazma, Alvis

Publication type:

Article

Integrative structural and dynamical biology with PLUMED-ISDB.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3999, doi. 10.1093/bioinformatics/btx529

By:

Bonomi, Massimiliano;
Camilloni, Carlo

Publication type:

Article

AlloSigMA: allosteric signaling and mutation analysis server.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3996, doi. 10.1093/bioinformatics/btx430

By:

Guarnera, Enrico;
Zhen Wah Tan;
Zejun Zheng;
Berezovsky, Igor N.

Publication type:

Article

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3993, doi. 10.1093/bioinformatics/btx535

By:

Libin, Pieter;
Eynden, Ewout Vanden;
Incardona, Francesca;
Nowé, Ann;
Bezenchek, Antonia;
Sönnerborg, Anders;
Vandamme, Anne-Mieke;
Theys, Kristof;
Baele, Guy

Publication type:

Article

ALIGNSEC: viewing protein secondary structure predictions within large multiple sequence alignments.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3991, doi. 10.1093/bioinformatics/btx521

By:

Deléage, Gilbert

Publication type:

Article

Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3988, doi. 10.1093/bioinformatics/btx537

By:

Son Hoang Nguyen;
Duarte, Tania P. S.;
Coin, Lachlan J. M.;
Minh Duc Cao

Publication type:

Article

CESAR 2.0 substantially improves speed and accuracy of comparative gene annotation.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3985, doi. 10.1093/bioinformatics/btx527

By:

Sharma, Virag;
Schwede, Peter;
Hiller, Michael

Publication type:

Article

ChAMP: updated methylation analysis pipeline for Illumina BeadChips.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3982, doi. 10.1093/bioinformatics/btx513

By:

Yuan Tian;
Morris, Tiffany J.;
Webster, Amy P.;
Zhen Yang;
Beck, Stephan;
Feber, Andrew;
Teschendorff, Andrew E.

Publication type:

Article

Cancer Hallmarks Analytics Tool (CHAT): a text mining approach to organize and evaluate scientific literature on cancer.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3973, doi. 10.1093/bioinformatics/btx454

By:

Baker, Simon;
Ali, Imran;
Silins, Ilona;
Pyysalo, Sampo;
Yufan Guo;
Högberg, Johan;
Stenius, Ulla;
Korhonen, Anna

Publication type:

Article

HiDi: an efficient reverse engineering schema for large-scale dynamic regulatory network reconstruction using adaptive differentiation.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3964, doi. 10.1093/bioinformatics/btx501

By:

Yue Deng;
Zenil, Hector;
Tegnér, Jesper;
Kiani, Narsis A.

Publication type:

Article

Predicting novel metabolic pathways through subgraph mining.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3955, doi. 10.1093/bioinformatics/btx481

By:

Sankar, Aravind;
Ranu, Sayan;
Raman, Karthik

Publication type:

Article

FOLD: a method to optimize power in meta-analysis of genetic association studies with overlapping subjects.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3947, doi. 10.1093/bioinformatics/btx463

By:

Kim, Emma E.;
Seunghoon Lee;
Cue Hyunkyu Lee;
Hyunjung Oh;
Kyuyoung Song;
Buhm Han

Publication type:

Article

Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim).

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3938, doi. 10.1093/bioinformatics/btx533

By:

Yermanos, Alexander;
Greiff, Victor;
Krautler, Nike Julia;
Menzel, Ulrike;
Dounas, Andreas;
Miho, Enkelejda;
Oxenius, Annette;
Stadler, Tanja;
Reddy, Sai T.

Publication type:

Article

An improved compound Poisson model for the number of motif hits in DNA sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3929, doi. 10.1093/bioinformatics/btx539

By:

Kopp, Wolfgang;
Vingron, Martin

Publication type:

Article

Kmer-SSR: a fast and exhaustive SSR search algorithm.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3922, doi. 10.1093/bioinformatics/btx538

By:

Pickett, Brandon D.;
Miller, Justin B.;
Ridge, Perry G.

Publication type:

Article

RUCS: rapid identification of PCR primers for unique core sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3917, doi. 10.1093/bioinformatics/btx526

By:

Thomsen, Martin Christen Frølund;
Hasman, Henrik;
Westh, Henrik;
Kaya, Hülya;
Lund, Ole

Publication type:

Article

MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3909, doi. 10.1093/bioinformatics/btx496

By:

Duolin Wang;
Shuai Zeng;
Chunhui Xu;
Wangren Qiu;
Yanchun Liang;
Joshi, Trupti;
Dong Xu

Publication type:

Article

SVM-dependent pairwise HMM: an application to protein pairwise alignments.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3902, doi. 10.1093/bioinformatics/btx391

By:

Orlando, Gabriele;
Raimondi, Daniele;
Khan, Taushif;
Lenaerts, Tom;
Vranken, Wim F.

Publication type:

Article

FIRE: functional inference of genetic variants that regulate gene expression.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3895, doi. 10.1093/bioinformatics/btx534

By:

Ioannidis, Nilah M.;
Davis, Joe R.;
DeGorter, Marianne K.;
Larson, Nicholas B.;
McDonnell, Shannon K.;
French, Amy J.;
Battle, Alexis J.;
Hastie, Trevor J.;
Thibodeau, Stephen N.;
Montgomery, Stephen B.;
Bustamante, Carlos D.;
Sieh, Weiva;
Whittemore, Alice S.

Publication type:

Article

LLR: a latent low-rank approach to colocalizing genetic risk variants in multiple GWAS.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3878, doi. 10.1093/bioinformatics/btx512

By:

Jin Liu;
Xiang Wan;
Chaolong Wang;
Chao Yang;
Xiaowei Zhou;
Can Yang

Publication type:

Article

HaploForge: a comprehensive pedigree drawing and haplotype visualization web application.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3871, doi. 10.1093/bioinformatics/btx510

By:

Tekman, Mehmet;
Medlar, Alan;
Mozere, Monika;
Kleta, Robert;
Stanescu, Horia

Publication type:

Article

Genome-wide association studies using a penalized moving-window regression.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3887, doi. 10.1093/bioinformatics/btx522

By:

Bao, Minli;
Kai Wang

Publication type:

Article