Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 23

Results: 30

MIRMMR: binary classification of microsatellite instability using methylation and mutations.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3799, doi. 10.1093/bioinformatics/btx507

By:

Foltz, Steven M.;
Wen-Wei Liang;
Mingchao Xie;
Li Ding

Publication type:

Article

DISC: DISulfide linkage Characterization from tandem mass spectra.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3861, doi. 10.1093/bioinformatics/btx667

By:

Yi Liu;
Weiping Sun;
Baozhen Shan;
Kaizhong Zhang

Publication type:

Article

MetaCache: context-aware classification of metagenomic reads using minhashing.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3740, doi. 10.1093/bioinformatics/btx520

By:

Müller, André;
Hundt, Christian;
Hildebrandt, Andreas;
Hankeln, Thomas;
Schmidt, Bertil

Publication type:

Article

Prediction of delayed retention of antibodies in hydrophobic interaction chromatography from sequence using machine learning.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3758, doi. 10.1093/bioinformatics/btx519

By:

Jain, Tushar;
Boland, Todd;
Lilov, Asparouh;
Burnina, Irina;
Brown, Michael;
Yingda Xu;
Vásquez, Maximiliano

Publication type:

Article

CRISPR-DAV: CRISPR NGS data analysis and visualization pipeline.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3811, doi. 10.1093/bioinformatics/btx518

By:

Xuning Wang;
Tilford, Charles;
Neuhaus, Isaac;
Mintier, Gabe;
Qi Guo;
Feder, John N.;
Kirov, Stefan

Publication type:

Article

MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3808, doi. 10.1093/bioinformatics/btx517

By:

Rodrigues, João F. Matias;
Schmidt, Thomas S. B.;
Tackmann, Janko;
von Mering, Christian

Publication type:

Article

Conditional asymptotic inference for the kernel association test.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3733, doi. 10.1093/bioinformatics/btx511

By:

Kai Wang

Publication type:

Article

Efficient inference for sparse latent variable models of transcriptional regulation.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3776, doi. 10.1093/bioinformatics/btx508

By:

Zhenwen Dai;
Iqbal, Mudassar;
Lawrence, Neil D.;
Rattray, Magnus

Publication type:

Article

Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3696, doi. 10.1093/bioinformatics/btx503

By:

Rapakoulia, Trisevgeni;
Xin Gao;
Yi Huang;
de Hoon, Michiel;
Okada-Hatakeyama, Mariko;
Suzuki, Harukazu;
Arner, Erik

Publication type:

Article

Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3691, doi. 10.1093/bioinformatics/btx502

By:

Carmona-Sáez, Pedro;
Varela, Nieves;
Luque, María José;
Toro-Domínguez, Daniel;
Martorell-Marugan, Jordi;
Alarcón-Riquelme, Marta E.;
Marañón, Concepción

Publication type:

Article

Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3749, doi. 10.1093/bioinformatics/btx514

By:

Jianwei Zhu;
Haicang Zhang;
Shuai Cheng Li;
Chao Wang;
Lupeng Kong;
Shiwei Sun;
Wei-Mou Zheng;
Dongbo Bu

Publication type:

Article

EMHP: an accurate automated hole masking algorithm for single-particle cryo-EM image processing.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3824, doi. 10.1093/bioinformatics/btx500

By:

Berndsen, Zachary;
Bowman, Charles;
Haerin Jang;
Ward, Andrew B.

Publication type:

Article

Lep-MAP3: robust linkage mapping even for low-coverage whole genome sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3726, doi. 10.1093/bioinformatics/btx494

By:

Rastas, Pasi

Publication type:

Article

PyLasso: a PyMOL plugin to identify lassos.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3819, doi. 10.1093/bioinformatics/btx493

By:

Gierut, Aleksandra M.;
Niemyska, Wanda;
Dabrowski-Tumanski, Pawel;
Sułkowski, Piotr;
Sulkowska, Joanna I.

Publication type:

Article

Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3822, doi. 10.1093/bioinformatics/btx492

By:

Radom, Marcin;
Rybarczyk, Agnieszka;
Szawulak, Bartłomiej;
Andrzejewski, Hubert;
Chabelski, Piotr;
Kozak, Adam;
Formanowicz, Piotr

Publication type:

Article

RealityConvert: a tool for preparing 3D models of biochemical structures for augmented and virtual reality.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3816, doi. 10.1093/bioinformatics/btx485

By:

Borrel, Alexandre;
Fourches, Denis

Publication type:

Article

Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3716, doi. 10.1093/bioinformatics/btx470

By:

Meng Wang;
Zhanglong Ji;
Shuang Wang;
Jihoon Kim;
Hai Yang;
Xiaoqian Jiang;
Ohno-Machado, Lucila

Publication type:

Article

Cloud-based interactive analytics for terabytes of genomic variants data.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3709, doi. 10.1093/bioinformatics/btx468

By:

Cuiping Pan;
McInnes, Gregory;
Deflaux, Nicole;
Snyder, Michael;
Bingham, Jonathan;
Datta, Somalee;
Tsao, Philip S.

Publication type:

Article

Detect differentially methylated regions using non-homogeneous hidden Markov model for methylation array data.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3701, doi. 10.1093/bioinformatics/btx467

By:

Linghao Shen;
Jun Zhu;
Shuo-Yen Robert Li;
Xiaodan Fan

Publication type:

Article

Using uncertainty to link and rank evidence from biomedical literature for model curation.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3784, doi. 10.1093/bioinformatics/btx466

By:

Zerva, Chrysoula;
Batista-Navarro, Riza;
Day, Philip;
Ananiadou, Sophia

Publication type:

Article

PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3796, doi. 10.1093/bioinformatics/btx462

By:

Vielva, Luis;
Toro, María de;
Lanza, Val F.;
de la Cruz, Fernando

Publication type:

Article

wft4galaxy: a workflow testing tool for galaxy.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3805, doi. 10.1093/bioinformatics/btx461

By:

Piras, Marco Enrico;
Pireddu, Luca;
Zanetti, Gianluigi

Publication type:

Article

proFIA: a data preprocessing workflow for flow injection analysis coupled to high-resolution mass spectrometry.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3767, doi. 10.1093/bioinformatics/btx458

By:

Delabriére, Alexis;
Hohenester, Ulli M.;
Colsch, Benoit;
Junot, Christophe;
Fenaille, François;
Thévenot, Etienne A.

Publication type:

Article

cgHeliParm: analysis of dsDNA helical parameters for coarse-grained MARTINI molecular dynamics simulations.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3813, doi. 10.1093/bioinformatics/btx444

By:

Faustino, Ignacio;
Marrink, S. J.

Publication type:

Article

GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3802, doi. 10.1093/bioinformatics/btx423

By:

Pal, Karol;
Bystry, Vojtech;
Reigl, Tomas;
Demko, Martin;
Krejci, Adam;
Touloumenidou, Tasoula;
Stalika, Evangelia;
Tichy, Boris;
Ghia, Paolo;
Stamatopoulos, Kostas;
Pospisilova, Sarka;
Malcikova, Jitka;
Darzentas, Nikos

Publication type:

Article

HUGIn: Hi-C Unifying Genomic Interrogator.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3793, doi. 10.1093/bioinformatics/btx359

By:

Martin, Joshua S.;
Zheng Xu;
Reiner, Alex P.;
Mohlke, Karen L.;
Sullivan, Patrick;
Bing Ren;
Ming Hu;
Yun Li

Publication type:

Article

Spresso: an ultrafast compound pre-screening method based on compound decomposition.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3836, doi. 10.1093/bioinformatics/btx178

By:

Keisuke Yanagisawa;
Shunta Komine;
Suzuki, Shogo D.;
Masahito Ohue;
Takashi Ishida;
Yutaka Akiyama

Publication type:

Article

MapReduce for accurate error correction of next-generation sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3844, doi. 10.1093/bioinformatics/btx089

By:

Liang Zhao;
Qingfeng Chen;
Wencui Li;
Peng Jiang;
Limsoon Wong;
Jinyan Li

Publication type:

Article

An efficient concordant integrative analysis of multiple large-scale two-sample expression data sets.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3852, doi. 10.1093/bioinformatics/btx061

By:

Yinglei Lai;
Fanni Zhang;
Nayak, Tapan K.;
Modarres, Reza;
Lee, Norman H.;
McCaffrey, Timothy A.

Publication type:

Article

TimesVector: a vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3827, doi. 10.1093/bioinformatics/btw780

By:

Inuk Jung;
Kyuri Jo;
Hyejin Kang;
Hongryul Ahn;
Youngjae Yu;
Sun Kim

Publication type:

Article