Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 22

Results: 32

An introduction to deep learning on biological sequence data: examples and solutions.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3685, doi. 10.1093/bioinformatics/btx531

By:

Jurtz, Vanessa Isabell;
Johansen, Alexander Rosenberg;
Nielsen, Morten;
Armenteros, Jose Juan Almagro;
Nielsen, Henrik;
Sønderby, Casper Kaae;
Winther, Ole;
Sønderby, Søren Kaae

Publication type:

Article

MFIB: a repository of protein complexes with mutual folding induced by binding.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3682, doi. 10.1093/bioinformatics/btx486

By:

Fichó, Erzsébet;
Reményi, István;
Simon, István;
Mészáros, Bálint

Publication type:

Article

Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3679, doi. 10.1093/bioinformatics/btx399

By:

Domingo-Fernández, Daniel;
Kodamullil, Alpha Tom;
Iyappan, Anandhi;
Naz, Mufassra;
Emon, Mohammad Asif;
Raschka, Tamara;
Karki, Reagon;
Springstubbe, Stephan;
Ebeling, Christian;
Hofmann-Apitius, Martin

Publication type:

Article

myVCF: a desktop application for highthroughput mutations data management.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3676, doi. 10.1093/bioinformatics/btx475

By:

Pietrelli, Alessandro;
Valenti, Luca

Publication type:

Article

ComplexViewer: visualization of curated macromolecular complexes.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3673, doi. 10.1093/bioinformatics/btx497

By:

Combe, Colin W.;
Sivade, Marine (Dumousseau);
Hermjakob, Henning;
Heimbach, Joshua;
Meldal, Birgit H. M.;
Micklem, Gos;
Orchard, Sandra;
Rappsilber, Juri

Publication type:

Article

CausalR: extracting mechanistic sense from genome scale data.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3670, doi. 10.1093/bioinformatics/btx425

By:

Bradley, Glyn;
Barrett, Steven J.

Publication type:

Article

SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3667, doi. 10.1093/bioinformatics/btx456

By:

Kochańczyk, Marek;
Hlavacek, William S.;
Lipniacki, Tomasz

Publication type:

Article

DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3664, doi. 10.1093/bioinformatics/btx443

By:

Chia-Lang Hsu;
Jian-Kai Wang;
Pei-Chun Lu;
Hsuan-Cheng Huang;
Hsueh-Fen Juan

Publication type:

Article

DelPhiForce web server: electrostatic forces and energy calculations and visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3661, doi. 10.1093/bioinformatics/btx495

By:

Lin Li;
Zhe Jia;
Yunhui Peng;
Chakravorty, Arghya;
Lexuan Sun;
Alexov, Emil

Publication type:

Article

FAF-Drugs4: free ADME-tox filtering computations for chemical biology and early stages drug discovery.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3658, doi. 10.1093/bioinformatics/btx491

By:

Lagorce, David;
Bouslama, Lina;
Becot, Jerome;
Miteva, Maria A.;
Villoutreix, Bruno O.

Publication type:

Article

3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3655, doi. 10.1093/bioinformatics/btx483

By:

Segura, Joan;
Sanchez-Garcia, Ruben;
Martinez, Marta;
Cuenca-Alba, Jesus;
Tabas-Madrid, Daniel;
Sorzano, C. O. S.;
Carazo, J. M.

Publication type:

Article

LRCstats, a tool for evaluating long reads correction methods.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3652, doi. 10.1093/bioinformatics/btx489

By:

La, Sean;
Haghshenas, Ehsan;
Chauve, Cedric

Publication type:

Article

CrocoBLAST: Running BLAST efficiently in the age of next-generation sequencing.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3648, doi. 10.1093/bioinformatics/btx465

By:

Ramos, Ravi José Tristão;
de Azevedo Martins, Allan Ceézar;
da Silva Delgado, Gabrielle;
Ionescu, Crina-Maria;
Ürményi, Turán Peter;
Silva, Rosane;
Koča, Jaroslav

Publication type:

Article

ggseqlogo: a versatile R package for drawing sequence logos.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3645, doi. 10.1093/bioinformatics/btx469

By:

Wagih, Omar

Publication type:

Article

pgRNAFinder: a web-based tool to design distance independent paired-gRNA.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3642, doi. 10.1093/bioinformatics/btx472

By:

Yuanyan Xiong;
Xiaowei Xie;
Yanzhi Wang;
Wenbing Ma;
Puping Liang;
Zhou Songyang;
Zhiming Dai

Publication type:

Article

Phylotyper: in silico predictor of gene subtypes.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3638, doi. 10.1093/bioinformatics/btx459

By:

Whiteside, Matthew D.;
Gannon, Victor P. J.;
Laing, Chad R.

Publication type:

Article

gVolante for standardizing completeness assessment of genome and transcriptome assemblies.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3635, doi. 10.1093/bioinformatics/btx445

By:

Osamu Nishimura;
Yuichiro Hara;
Shigehiro Kuraku

Publication type:

Article

BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3627, doi. 10.1093/bioinformatics/btx478

By:

Chao Pang;
Kelpin, Fleur;
van Enckevort, David;
Eklund, Niina;
Silander, Kaisa;
Hendriksen, Dennis;
de Haan, Mark;
Jetten, Jonathan;
de Boer, Tommy;
Charbon, Bart;
Holub, Petr;
Hillege, Hans;
Swertz, Morris A.

Publication type:

Article

Improved prediction of breast cancer outcome by identifying heterogeneous biomarkers.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3619, doi. 10.1093/bioinformatics/btx487

By:

Jonghwan Choi;
Sanghyun Park;
Youngmi Yoon;
Jaegyoon Ahn

Publication type:

Article

The value of prior knowledge in machine learning of complex network systems.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3610, doi. 10.1093/bioinformatics/btx438

By:

Ferranti, Dana;
Krane, David;
Craft, David

Publication type:

Article

Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3603, doi. 10.1093/bioinformatics/btx453

By:

Chan, Siu H. J.;
Jingyi Cai;
Lin Wang;
Simons-Senftle, Margaret N.;
Maranas, Costas D.

Publication type:

Article

TSGSIS: a high-dimensional grouped variable selection approach for detection of whole-genome SNP-SNP interactions.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3595, doi. 10.1093/bioinformatics/btx409

By:

Yao-Hwei Fang;
Jie-Huei Wang;
Hsiung, Chao A.

Publication type:

Article

A robust DF-REML framework for variance components estimation in genetic studies.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3584, doi. 10.1093/bioinformatics/btx457

By:

Lourenço, V. M.;
Rodrigues, P. C.;
Pires, A. M.;
Piepho, H.-P.

Publication type:

Article

Sequence2Vec: a novel embedding approach for modeling transcription factor binding affinity landscape.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3575, doi. 10.1093/bioinformatics/btx480

By:

Hanjun Dai;
Umarov, Ramzan;
Hiroyuki Kuwahara;
Yu Li;
Le Song;
Xin Gao

Publication type:

Article

Prediction and modeling of pre-analytical sampling errors as a strategy to improve plasma NMR metabolomics data.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3567, doi. 10.1093/bioinformatics/btx442

By:

Brunius, Carl;
Pedersen, Anders;
Malmodin, Daniel;
Karlsson, B. Göran;
Andersson, Lars I.;
Tybring, Gunnel;
Landberg, Rikard

Publication type:

Article

Towards clinically more relevant dissection of patient heterogeneity via survival-based Bayesian clustering.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3558, doi. 10.1093/bioinformatics/btx464

By:

Ahmad, Ashar;
Fröhlich, Holger

Publication type:

Article

Analysis and prediction of protein folding energy changes upon mutation by element specific persistent homology.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3549, doi. 10.1093/bioinformatics/btx460

By:

Zixuan Cang;
Guo-Wei Wei

Publication type:

Article

SPRINT: an SNP-free toolkit for identifying RNA editing sites.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3538, doi. 10.1093/bioinformatics/btx473

By:

Feng Zhang;
Yulan Lu;
Sijia Yan;
Qinghe Xing;
Weidong Tian

Publication type:

Article

Motif independent identification of potential RNA G-quadruplexes by G4RNA screener.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3532, doi. 10.1093/bioinformatics/btx498

By:

Garant, Jean-Michel;
Perreault, Jean-Pierre;
Scott, Michelle S.

Publication type:

Article

pLoc-mAnimal: predict subcellular localization of animal proteins with both single and multiple sites.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3524, doi. 10.1093/bioinformatics/btx476

By:

Xiang Cheng;
Shu-Guang Zhao;
Wei-Zhong Lin;
Xuan Xiao;
Kuo-Chen Chou

Publication type:

Article

iDNA4mC: identifying DNA N<sup>4</sup>-methylcytosine sites based on nucleotide chemical properties.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3518, doi. 10.1093/bioinformatics/btx479

By:

Wei Chen;
Hui Yang;
Pengmian Feng;
Hui Ding;
Hao Lin

Publication type:

Article

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3511, doi. 10.1093/bioinformatics/btx482

By:

Carbonell-Caballero, José;
Amadoz, Alicia;
Alonso, Roberto;
Hidalgo, Marta R.;
Çubuk, Cankut;
Conesa, David;
López-Quílez, Antonio;
Dopazo, Joaquín

Publication type:

Article