Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 21

Results: 32

BSviewer: a genotype-preserving, nucleotide-level visualizer for bisulfite sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3495, doi. 10.1093/bioinformatics/btx505

By:

Kun Sun;
Lun, Fiona F. M.;
Peiyong Jiang;
Hao Sun

Publication type:

Article

SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3348, doi. 10.1093/bioinformatics/btx455

By:

Yuchao Xia;
Yun Liu;
Minghua Deng;
Ruibin Xi

Publication type:

Article

ScanGEO: parallel mining of high-throughput gene expression data.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3500, doi. 10.1093/bioinformatics/btx452

By:

Koeppen, Katja;
Stanton, Bruce A.;
Hampton, Thomas H.

Publication type:

Article

PySeqLab: an open source Python package for sequence labeling and segmentation.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3497, doi. 10.1093/bioinformatics/btx451

By:

Allam, Ahmed;
Krauthammer, Michael

Publication type:

Article

MethRaFo: MeDIP-seq methylation estimate using a Random Forest Regressor.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3477, doi. 10.1093/bioinformatics/btx449

By:

Jun Ding;
Bar-Joseph, Ziv

Publication type:

Article

Gating mass cytometry data by deep learning.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3423, doi. 10.1093/bioinformatics/btx448

By:

Huamin Li;
Shaham, Uri;
Stanton, Kelly P.;
Yi Yao;
Montgomery, Ruth R.;
Kluger, Yuval

Publication type:

Article

Reactome enhanced pathway visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3461, doi. 10.1093/bioinformatics/btx441

By:

Sidiropoulos, Konstantinos;
Viteri, Guilherme;
Sevilla, Cristoffer;
Jupe, Steve;
Webber, Marissa;
Orlic-Milacic, Marija;
Jassal, Bijay;
May, Bruce;
Shamovsky, Veronica;
Duenas, Corina;
Rothfels, Karen;
Matthews, Lisa;
Heeyeon Song;
Stein, Lincoln;
Haw, Robin;
D'eustachio, Peter;
Peipei Ping;
Hermjakob, Henning;
Fabregat, Antonio

Publication type:

Article

VICTOR: genome-based phylogeny and classification of prokaryotic viruses.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3396, doi. 10.1093/bioinformatics/btx440

By:

Meier-Kolthoff, Jan P.;
Göker, Markus

Publication type:

Article

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3454, doi. 10.1093/bioinformatics/btx439

By:

Poux, Sylvain;
Arighi, Cecilia N.;
Magrane, Michele;
Bateman, Alex;
Chih-Hsuan Wei;
Zhiyong Lu;
Boutet, Emmanuel;
Hema Bye-A.-Jee;
Famiglietti, Maria Livia;
Roechert, Bernd

Publication type:

Article

powsimR: power analysis for bulk and single cell RNA-seq experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3486, doi. 10.1093/bioinformatics/btx435

By:

Vieth, Beate;
Ziegenhain, Christoph;
Parekh, Swati;
Enard, Wolfgang;
Hellmann, Ines

Publication type:

Article

nandb--number and brightness in R with a novel automatic detrending algorithm.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3508, doi. 10.1093/bioinformatics/btx434

By:

Nolan, Rory;
Alvarez, Luis A. J.;
Elegheert, Jonathan;
Iliopoulou, Maro;
Jakobsdottir, G. Maria;
Rodriguez-Muñoz, Marina;
Aricescu, A. Radu;
Padilla-Parra, Sergi

Publication type:

Article

ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3340, doi. 10.1093/bioinformatics/btx433

By:

Zhiqun Xie;
Haixu Tang

Publication type:

Article

DeepLoc: prediction of protein subcellular localization using deep learning.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3387, doi. 10.1093/bioinformatics/btx431

By:

Almagro Armenteros, José Juan;
Sønderby, Casper Kaae;
Sønderby, Søren Kaae;
Nielsen, Henrik;
Winther, Ole

Publication type:

Article

ProtDec-LTR2.0: an improved method for protein remote homology detection by combining pseudo protein and supervised Learning to Rank.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3473, doi. 10.1093/bioinformatics/btx429

By:

Junjie Chen;
Mingyue Guo;
Shumin Li;
Bin Liu

Publication type:

Article

Quark enables semi-reference-based compression of RNA-seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3380, doi. 10.1093/bioinformatics/btx428

By:

Sarkar, Hirak;
Patro, Rob

Publication type:

Article

Linking metabolic network features to phenotypes using sparse group lasso.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3445, doi. 10.1093/bioinformatics/btx427

By:

Samal, Satya Swarup;
Radulescu, Ovidiu;
Weber, Andreas;
Fröhlich, Holger

Publication type:

Article

modPhEA: model organism Phenotype Enrichment Analysis of eukaryotic gene sets.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3505, doi. 10.1093/bioinformatics/btx426

By:

Meng-Pin Weng;
Ben-Yang Liao

Publication type:

Article

TITINdb--a computational tool to assess titin's role as a disease gene.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3482, doi. 10.1093/bioinformatics/btx424

By:

Laddach, Anna;
Gautel, Mathias;
Fraternali, Franca

Publication type:

Article

VCF-Explorer: filtering and analysing whole genome VCF files.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3468, doi. 10.1093/bioinformatics/btx422

By:

Akgün, Mete;
Demirci, Hüseyin

Publication type:

Article

CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3331, doi. 10.1093/bioinformatics/btx421

By:

Noutahi, Emmanuel;
Calderon, Virginie;
Blanchette, Mathieu;
Lang, Franz B.;
El-Mabrouk, Nadia

Publication type:

Article

GPU-powered model analysis with PySB/cupSODA.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3492, doi. 10.1093/bioinformatics/btx420

By:

Harris, Leonard A.;
Nobile, Marco S.;
Pino, James C.;
Lubbock, Alexander L. R.;
Besozzi, Daniela;
Mauri, Giancarlo;
Cazzaniga, Paolo;
Lopez, Carlos F.

Publication type:

Article

HybridSim-VS: a web server for large-scale ligand-based virtual screening using hybrid similarity recognition techniques.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3480, doi. 10.1093/bioinformatics/btx418

By:

Jinling Shang;
Xi Dai;
Yecheng Li;
Pistolozzi, Marco;
Ling Wang

Publication type:

Article

SCooP: an accurate and fast predictor of protein stability curves as a function of temperature.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3415, doi. 10.1093/bioinformatics/btx417

By:

Pucci, Fabrizio;
Kwasigroch, Jean Marc;
Rooman, Marianne

Publication type:

Article

Forecasting residue--residue contact prediction accuracy.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3405, doi. 10.1093/bioinformatics/btx416

By:

Wozniak, P. P.;
Konopka, B. M.;
Xu, J.;
Vriend, G.;
Kotulska, M.

Publication type:

Article

The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3489, doi. 10.1093/bioinformatics/btx415

By:

Wiredja, Danica D.;
Koyutürk, Mehmet;
Chance, Mark R.

Publication type:

Article

pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3373, doi. 10.1093/bioinformatics/btx413

By:

Hon, Jiří;
Martínek, Tomáš;
Zendulka, Jaroslav;
Lexa, Matej

Publication type:

Article

High-speed and high-ratio referential genome compression.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3364, doi. 10.1093/bioinformatics/btx412

By:

Yuansheng Liu;
Hui Peng;
Limsoon Wong;
Jinyan Li

Publication type:

Article

Inferring transcriptional logic from multiple dynamic experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3437, doi. 10.1093/bioinformatics/btx407

By:

Minas, Giorgos;
Jenkins, Dafyd J.;
Rand, David A.;
Finkenstädt, Bärbel

Publication type:

Article

FALCON: a toolbox for the fast contextualization of logical networks.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3431, doi. 10.1093/bioinformatics/btx380

By:

De Landtsheer, Sébastien;
Trairatphisan, Panuwat;
Lucarelli, Philippe;
Sauter, Thomas

Publication type:

Article

GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3355, doi. 10.1093/bioinformatics/btx342

By:

Alser, Mohammed;
Hassan, Hasan;
Hongyi Xin;
Ergin, Oğuz;
Mutlu, Onur;
Alkan, Can

Publication type:

Article

The neXtProt peptide uniqueness checker: a tool for the proteomics community.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3471, doi. 10.1093/bioinformatics/btx318

By:

Schaeffer, Mathieu;
Gateau, Alain;
Teixeira, Daniel;
Michel, Pierre-André;
Zahn-Zabal, Monique;
Lane, Lydie

Publication type:

Article

BioMake: a GNU make-compatible utility for declarative workflow management.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3502, doi. 10.1093/bioinformatics/btx306

By:

Holmes, Ian H.;
Mungall, Christopher J.

Publication type:

Article