Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 20

Results: 30

VariantTools: an extensible framework for developing and testing variant callers.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3311, doi. 10.1093/bioinformatics/btx450

By:

Lawrence, Michael;
Gentleman, Robert

Publication type:

Article

TeachEnG: a Teaching Engine for Genomics.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3296, doi. 10.1093/bioinformatics/btx447

By:

Minji Kim;
Yeonsung Kim;
Lei Qian;
Song, Jun S.

Publication type:

Article

CircPro: an integrated tool for the identification of circRNAs with protein-coding potential.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3314, doi. 10.1093/bioinformatics/btx446

By:

Xianwen Meng;
Qi Chen;
Peijing Zhang;
Ming Chen

Publication type:

Article

Epigenomic annotation-based interpretation of genomic data: from enrichment analysis to machine learning.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3323, doi. 10.1093/bioinformatics/btx414

By:

Dozmorov, Mikhail G.

Publication type:

Article

TSIS: an R package to infer alternative splicing isoform switches for time-series data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3308, doi. 10.1093/bioinformatics/btx411

By:

Guo, Wenbin;
Calixto, Cristiane P. G.;
Brown, John W. S.;
Runxuan Zhang

Publication type:

Article

Panoptes: web-based exploration of large scale genome variation data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3243, doi. 10.1093/bioinformatics/btx410

By:

Vauterin, Paul;
Jeffery, Ben;
Miles, Alistair;
Amato, Roberto;
Hart, Lee;
Wright, Ian;
Kwiatkowski, Dominic

Publication type:

Article

Partitioned learning of deep Boltzmann machines for SNP data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3173, doi. 10.1093/bioinformatics/btx408

By:

Hess, Moritz;
Lenz, Stefan;
Blätte, Tamara J.;
Bullinger, Lars;
Binder, Harald

Publication type:

Article

Identification of transcript regulatory patterns in cell differentiation.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3235, doi. 10.1093/bioinformatics/btx406

By:

Gusnanto, Arief;
Gosling, John Paul;
Pope, Christopher

Publication type:

Article

BioQueue: a novel pipeline framework to accelerate bioinformatics analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3286, doi. 10.1093/bioinformatics/btx403

By:

Li Yao;
Heming Wang;
Yuanyuan Song;
Guangchao Sui

Publication type:

Article

BPP: a sequence-based algorithm for branch point prediction.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3166, doi. 10.1093/bioinformatics/btx401

By:

Qing Zhang;
Xiaodan Fan;
YejunWang;
Ming-an Sun;
Jianlin Shao;
Dianjing Guo

Publication type:

Article

SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3202, doi. 10.1093/bioinformatics/btx400

By:

Chevrette, Marc G.;
Aicheler, Fabian;
Kohlbacher, Oliver;
Currie, Cameron R.;
Medema, Marnix H.

Publication type:

Article

Pheno4J: a gene to phenotype graph database.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3317, doi. 10.1093/bioinformatics/btx397

By:

Mughal, Sajid;
Moghul, Ismail;
Jing Yu;
Clark, Tristan;
Gregory, David S.;
Pontikos, Nikolas

Publication type:

Article

PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3283, doi. 10.1093/bioinformatics/btx396

By:

Mallet, Ludovic;
Bitard-Feildel, Tristan;
Cerutti, Franck;
Chiapello, Hélène

Publication type:

Article

EDEN: evolutionary dynamics within environments.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3292, doi. 10.1093/bioinformatics/btx394

By:

Münch, Philipp C.;
Stecher, Bärbel;
McHardy, Alice C.

Publication type:

Article

Matrix completion with side information and its applications in predicting the antigenicity of influenza viruses.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3195, doi. 10.1093/bioinformatics/btx390

By:

Li Huang;
Xianhong Li;
Pengfei Guo;
Yuhua Yao;
Bo Liao;
Weiwei Zhang;
Fayou Wang;
Jiasheng Yang;
Yulong Zhao;
Hailiang Sun;
Pingan He;
Jialiang Yang

Publication type:

Article

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3158, doi. 10.1093/bioinformatics/btx379

By:

Stavrovskaya, Elena D.;
Niranjan, Tejasvi;
Fertig, Elana J.;
Wheelan, Sarah J.;
Favorov, Alexander V.;
Mironov, Andrey A.

Publication type:

Article

Sparse redundancy analysis of high-dimensional genetic and genomic data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3228, doi. 10.1093/bioinformatics/btx374

By:

Csala, Attila;
Voorbraak, Frans P. J. M.;
Zwinderman, Aeilko H.;
Hof, Michel H.

Publication type:

Article

Comparison of pre-processing methods for Infinium HumanMethylation450 BeadChip array.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3151, doi. 10.1093/bioinformatics/btx372

By:

Yu-Jia Shiah;
Fraser, Michael;
Bristow, Robert G.;
Boutros, Paul C.

Publication type:

Article

EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific epigenomic features.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3268, doi. 10.1093/bioinformatics/btx371

By:

Yu He;
Ting Wang

Publication type:

Article

A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3188, doi. 10.1093/bioinformatics/btx370

By:

Recanati, Antoine;
Brüls, Thomas;
d'Aspremont, Alexandre

Publication type:

Article

pulseR: Versatile computational analysis of RNA turnover from metabolic labeling experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3305, doi. 10.1093/bioinformatics/btx368

By:

Uvarovskii, Alexey;
Dieterich, Christoph

Publication type:

Article

Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3302, doi. 10.1093/bioinformatics/btx365

By:

Mandric, Igor;
Temate-Tiagueu, Yvette;
Shcheglova, Tatiana;
Al Seesi, Sahar;
Zelikovsky, Alex;
Măndoiu, Ion I.

Publication type:

Article

Integrative analysis of multiple genomic variables using a hierarchical Bayesian model.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3220, doi. 10.1093/bioinformatics/btx356

By:

Sch€afer, Martin;
Klein, Hans-Ulrich;
Schwender, Holger

Publication type:

Article

Tissue-specific network-based genome wide study of amygdala imaging phenotypes to identify functional interaction modules.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3250, doi. 10.1093/bioinformatics/btx344

By:

Xiaohui Yao;
Jingwen Yan;
Kefei Liu;
Sungeun Kim;
Kwangsik Nho;
L. Risacher, Shannon;
S. Greene, Casey;
H. Moore, Jason;
J. Saykin, Andrew;
Li Shen

Publication type:

Article

HEROD: a human ethnic and regional specific omics database.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3276, doi. 10.1093/bioinformatics/btx340

By:

Xian Zeng;
Lin Tao;
Peng Zhang;
Chu Qin;
Shangying Chen;
Weidong He;
Ying Tan;
Hong Xia Liu;
Sheng Yong Yang;
Zhe Chen;
Yu Yang Jiang;
Yu Zong Chen

Publication type:

Article

Detecting and removing multiplicative spatial bias in high-throughput screening technologies.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3258, doi. 10.1093/bioinformatics/btx327

By:

Caraus, Iurie;
Mazoure, Bogdan;
Nadon, Robert;
Makarenkov, Vladimir

Publication type:

Article

Model-based branching point detection in single-cell data by K-branches clustering.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3211, doi. 10.1093/bioinformatics/btx325

By:

Chlis, Nikolaos K.;
Wolf, F. Alexander;
Theis, Fabian J.

Publication type:

Article

ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3299, doi. 10.1093/bioinformatics/btx216

By:

Porter, Kathryn A.;
Bing Xia;
Beglov, Dmitri;
Bohnuud, Tanggis;
Alam, Nawsad;
Schueler-Furman, Ora;
Kozakov, Dima

Publication type:

Article

Succinct colored de Bruijn graphs.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3181, doi. 10.1093/bioinformatics/btx067

By:

Muggli, Martin D.;
Bowe, Alexander;
Noyes, Noelle R.;
Morley, Paul S.;
Belk, Keith E.;
Raymond, Robert;
Gagie, Travis;
Puglisi, Simon J.;
Boucher, Christina

Publication type:

Article

CPSS 2.0: a computational platform update for the analysis of small RNA sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3289, doi. 10.1093/bioinformatics/btx066

By:

Changlin Wan;
Jianing Gao;
Huan Zhang;
Xiaohua Jiang;
Qiguang Zang;
Rongjun Ban;
Yuanwei Zhang;
Qinghua Shi

Publication type:

Article