Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 2

Results: 28

Corrigendum.

Published in:: 2017
Publication type:: Correction Notice

FoldAtlas: a repository for genome-wide RNA structure probing data.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 306, doi. 10.1093/bioinformatics/btw611

By:

Norris, Matthew;
Chun Kit Kwok;
Cheema, Jitender;
Hartley, Matthew;
Morris, Richard J.;
Aviran, Sharon;
Yiliang Ding

Publication type:

Article

Biospark: scalable analysis of large numerical datasets from biological simulations and experiments using Hadoop and Spark.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 303, doi. 10.1093/bioinformatics/btw614

By:

Klein, Max;
Sharma, Rati;
Bohrer, Chris H.;
Avelis, Cameron M.;
Roberts, Elijah

Publication type:

Article

IsotopicLabelling: an R package for the analysis of MS isotopic patterns of labelled analytes.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 300, doi. 10.1093/bioinformatics/btw588

By:

Ferrazza, Ruggero;
Griffin, Julian L.;
Guella, Graziano;
Franceschi, Pietro

Publication type:

Article

D-VASim: an interactive virtual laboratory environment for the simulation and analysis of genetic circuits.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 297, doi. 10.1093/bioinformatics/btw592

By:

Baig, Hasan;
Madsen, Jan

Publication type:

Article

GeneEvolve: a fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 294, doi. 10.1093/bioinformatics/btw606

By:

Tahmasbi, Rasool;
Keller, Matthew C.

Publication type:

Article

ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 292, doi. 10.1093/bioinformatics/btw593

By:

Rosenfeld, Aaron M.;
Meng, Wenzhao;
Prak, Eline T. Luning;
Hershberg, Uri

Publication type:

Article

TRI_tool: a web-tool for prediction of protein-protein interactions in human transcriptional regulation.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 289, doi. 10.1093/bioinformatics/btw590

By:

Perovic, Vladimir;
Sumonja, Neven;
Gemovic, Branislava;
Toska, Eneda;
Roberts, Stefan G.;
Veljkovic, Nevena

Publication type:

Article

Cas-analyzer: an online tool for assessing genome editing results using NGS data.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 286, doi. 10.1093/bioinformatics/btw561

By:

Jeongbin Park;
Kayeong Lim;
Jin-Soo Kim;
Sangsu Bae

Publication type:

Article

AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 283, doi. 10.1093/bioinformatics/btw601

By:

Lanza, Val F.;
Baquero, Fernando;
de la Cruz, Fernando;
Coque, Teresa M.

Publication type:

Article

tHapMix: simulating tumour samples through haplotype mixtures.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 280, doi. 10.1093/bioinformatics/btw589

By:

Ivakhno, Sergii;
Colombo, Camilla;
Tanner, Stephen;
Tedder, Philip;
Berri, Stefano;
Cox, Anthony J.

Publication type:

Article

LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 272, doi. 10.1093/bioinformatics/btw613

By:

Jie Zheng;
Erzurumluoglu, A. Mesut;
Elsworth, Benjamin L.;
Kemp, John P.;
Howe, Laurence;
Haycock, Philip C.;
Hemani, Gibran;
Tansey, Katherine;
Laurin, Charles;
Pourcain, Beate St.;
Warrington, Nicole M.;
Finucane, Hilary K.;
Price, Alkes L.;
Bulik-Sullivan, Brendan K.;
Anttila, Verneri;
Paternoster, Lavinia;
Gaunt, Tom R.;
Evans, David M.;
Neale, Benjamin M.

Publication type:

Article

cMapper: gene-centric connectivity mapper for EBI-RDF platform.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 266, doi. 10.1093/bioinformatics/btw612

By:

Shoaib, Muhammad;
Ansari, Adnan Ahmad;
Sung-Min Ahn

Publication type:

Article

Detecting subnetwork-level dynamic correlations.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 256, doi. 10.1093/bioinformatics/btw616

By:

Yan Yan;
Shangzhao Qiu;
Zhuxuan Jin;
Sihong Gong;
Yun Bai;
Jianwei Lu;
Tianwei Yu

Publication type:

Article

Improved methods for multi-trait fine mapping of pleiotropic risk loci.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 248, doi. 10.1093/bioinformatics/btw615

By:

Kichaev, Gleb;
Roytman, Megan;
Johnson, Ruth;
Eskin, Eleazar;
Lindström, Sara;
Kraft, Peter;
Pasaniuc, Bogdan

Publication type:

Article

Tissue-specific pathway association analysis using genome-wide association study summaries.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 243, doi. 10.1093/bioinformatics/btw595

By:

Wenyu Wang;
Jingcan Hao;
Shuyu Zheng;
Qianrui Fan;
Awen He;
Yan Wen;
Xiong Guo;
Cuiyan Wu;
Sen Wang;
Tielin Yang;
Hui Shen;
Xiangding Chen;
Qing Tian;
Lijun Tan;
Hong-Wen Deng;
Feng Zhang

Publication type:

Article

Robust classification of single-cell transcriptome data by nonnegative matrix factorization.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 235, doi. 10.1093/bioinformatics/btw607

By:

Shao, Chunxuan;
Höfer, Thomas

Publication type:

Article

A generative model for the behavior of RNA polymerase.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 227, doi. 10.1093/bioinformatics/btw599

By:

Azofeifa, Joseph G.;
Dowell, Robin D.

Publication type:

Article

Reference point insensitive molecular data analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 219, doi. 10.1093/bioinformatics/btw598

By:

Altenbuchinger, M.;
Rehberg, T.;
Zacharias, H. U.;
Stämmler, F.;
Dettmer, K.;
Weber, D.;
Hiergeist, A.;
Gessner, A.;
Holler, E.;
Oefner, P. J.;
Spang, R.

Publication type:

Article

FBB: a fast Bayesian-bound tool to calibrate RNA-seq aligners.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 210, doi. 10.1093/bioinformatics/btw608

By:

Rodriguez-Lujan, Irene;
Hasty, Jeff;
Huerta, Ramón

Publication type:

Article

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 202, doi. 10.1093/bioinformatics/btw603

By:

Yuki Kato;
Tomoya Mori;
Kengo Sato;
Shingo Maegawa;
Hiroshi Hosokawa;
Tatsuya Akutsu

Publication type:

Article

LAMSA: fast split read alignment with long approximate matches.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 192, doi. 10.1093/bioinformatics/btw594

By:

Bo Liu;
Yan Gao;
Yadong Wang

Publication type:

Article

Seeksv: an accurate tool for somatic structural variation and virus integration detection.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 184, doi. 10.1093/bioinformatics/btw591

By:

Ying Liang;
Kunlong Qiu;
Bo Liao;
Wen Zhu;
Xuanlin Huang;
Lin Li;
Xiangtao Chen;
Keqin Li

Publication type:

Article

PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 177, doi. 10.1093/bioinformatics/btw605

By:

Xi Chen;
Xu Shi;
Hilakivi-Clarke, Leena;
Shajahan-Haq, Ayesha N.;
Clarke, Robert;
Jianhua Xuan

Publication type:

Article

BOSS: a novel scaffolding algorithm based on an optimized scaffold graph.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 169, doi. 10.1093/bioinformatics/btw597

By:

Junwei Luo;
Jianxin Wang;
Zhen Zhang;
Min Li;
Fang-Xiang Wu

Publication type:

Article

DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 161, doi. 10.1093/bioinformatics/btw596

By:

Xiao Wang;
Jinghua Gu;
Hilakivi-Clarke, Leena;
Clarke, Robert;
Jianhua Xuan

Publication type:

Article

ReliableGenome: annotation of genomic regions with high/low variant calling concordance.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 155, doi. 10.1093/bioinformatics/btw587

By:

Popitsch, Niko;
Schuh, Anna;
Taylor, Jenny C.

Publication type:

Article

Evolutionary conservation of Ebola virus proteins predicts important functions at residue level.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 151, doi. 10.1093/bioinformatics/btw610

By:

Arslan, Ahmed;
van Noort, Vera

Publication type:

Article