Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 19

Results: 38

fastNGSadmix: admixture proportions and principal component analysis of a single NGS sample.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3148, doi. 10.1093/bioinformatics/btx474

By:

Jørsboe, Emil;
Hanghøj, Kristian;
Albrechtsen, Anders

Publication type:

Article

GfaPy: a flexible and extensible software library for handling sequence graphs in Python.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3094, doi. 10.1093/bioinformatics/btx398

By:

Gonnella, Giorgio;
Kurtz, Stefan

Publication type:

Article

rqt: an R package for gene-level meta-analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3129, doi. 10.1093/bioinformatics/btx395

By:

Zhbannikov, Ilya Y.;
Arbeev, Konstantin G.;
Yashin, Anatoliy I.

Publication type:

Article

ClusterSignificance: a bioconductor package facilitating statistical analysis of class cluster separations in dimensionality reduced data.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3126, doi. 10.1093/bioinformatics/btx393

By:

Serviss, Jason T.;
Gådin, Jesper R.;
Eriksson, Per;
Folkersen, Lasse;
Grandér, Dan

Publication type:

Article

matter: an R package for rapid prototyping with larger-than-memory datasets on disk.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3142, doi. 10.1093/bioinformatics/btx392

By:

Bemis, Kylie A.;
Vitek, Olga

Publication type:

Article

The interfacial character of antibody paratopes: analysis of antibody-antigen structures.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 2971, doi. 10.1093/bioinformatics/btx389

By:

Minh N. Nguyen;
Pradhan, Mohan R.;
Verma, Chandra;
Pingyu Zhong

Publication type:

Article

kmerPyramid: an interactive visualization tool for nucleobase and k-mer frequencies.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3115, doi. 10.1093/bioinformatics/btx385

By:

Kruppa, Jochen;
van der Vries, Erhard;
Jo, Wendy K.;
Postel, Alexander;
Becher, Paul;
Osterhaus, Albert;
Jung, Klaus

Publication type:

Article

WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3113, doi. 10.1093/bioinformatics/btx383

By:

Galiez, Clovis;
Siebert, Matthias;
Enault, François;
Vincent, Jonathan;
Söding, Johannes

Publication type:

Article

GraphSpace: stimulating interdisciplinary collaborations in network biology.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3134, doi. 10.1093/bioinformatics/btx382

By:

Bharadwaj, Aditya;
Singh, Divit P.;
Ritz, Anna;
Tegge, Allison N.;
Poirel, Christopher L.;
Kraikivski, Pavel;
Adames, Neil;
Luther, Kurt;
Kale, Shiv D.;
Peccoud, Jean;
Tyson, John J.;
Murali, T. M.

Publication type:

Article

MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3028, doi. 10.1093/bioinformatics/btx381

By:

Ka-Chun Wong

Publication type:

Article

CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation and visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3131, doi. 10.1093/bioinformatics/btx378

By:

Taosheng Xu;
Thuc Duy Le;
Lin Liu;
Ning Su;
Rujing Wang;
Bingyu Sun;
Colaprico, Antonio;
Bontempi, Gianluca;
Jiuyong Li

Publication type:

Article

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3140, doi. 10.1093/bioinformatics/btx377

By:

Tappeiner, Elias;
Finotello, Francesca;
Charoentong, Pornpimol;
Mayer, Clemens;
Rieder, Dietmar;
Trajanoski, Zlatko

Publication type:

Article

Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3145, doi. 10.1093/bioinformatics/btx376

By:

Churas, Christopher;
Perez, Alex J.;
Hiroyuki Hakozaki;
Wong, Willy;
Lee, David;
Peltier, Steven T.;
Ellisman, Mark H.

Publication type:

Article

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3110, doi. 10.1093/bioinformatics/btx375

By:

Bais, Preeti;
Namburi, Sandeep;
Gatti, Daniel M.;
Xinyu Zhang;
Chuang, Jeffrey H.

Publication type:

Article

FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3137, doi. 10.1093/bioinformatics/btx373

By:

Brown, Joseph;
Pirrung, Meg;
McCue, Lee Ann

Publication type:

Article

A multi-scenario genome-wide medical population genetics simulation framework.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 2995, doi. 10.1093/bioinformatics/btx369

By:

Mugo, Jacquiline W.;
Geza, Ephifania;
Defo, Joel;
Elsheikh, Samar S. M.;
Mazandu, Gaston K.;
Mulder, Nicola J.;
Chimusa, Emile R.

Publication type:

Article

MoDMaps3D: an interactive webtool for the quantification and 3D visualization of interrelationships in a dataset of DNA sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3091, doi. 10.1093/bioinformatics/btx367

By:

Karamichalis, Rallis;
Kari, Lila

Publication type:

Article

runBNG: a software package for BioNano genomic analysis on the command line.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3107, doi. 10.1093/bioinformatics/btx366

By:

Yuxuan Yuan;
Bayer, Philipp E.;
Huey-Tyng Lee;
Edwards, David

Publication type:

Article

Breakpoint Surveyor: a pipeline for structural variant visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3121, doi. 10.1093/bioinformatics/btx362

By:

Wyczalkowski, Matthew A.;
Wylie, Kristine M.;
Song Cao;
McLellan, Michael D.;
Flynn, Jennifer;
Mo Huang;
Kai Ye;
Xian Fan;
Ken Chen;
Wendl, Michael C.;
Li Ding

Publication type:

Article

omiXcore: a web server for prediction of protein interactions with large RNA.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3104, doi. 10.1093/bioinformatics/btx361

By:

Armaos, Alexandros;
Cirillo, Davide;
Tartaglia, Gian Gaetano

Publication type:

Article

JDINAC: joint density-based non-parametric differential interaction network analysis and classification using high-dimensional sparse omics data.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3080, doi. 10.1093/bioinformatics/btx360

By:

Jiadong Ji;
Di He;
Yang Feng;
Yong He;
Fuzhong Xue;
Lei Xie

Publication type:

Article

Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3051, doi. 10.1093/bioinformatics/btx358

By:

Sang-Jun Park;
Jumin Lee;
Patel, Dhilon S.;
Hongjing Ma;
Hui Sun Lee;
Sunhwan Jo;
Wonpil Im

Publication type:

Article

DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3018, doi. 10.1093/bioinformatics/btx357

By:

Hao Peng;
Yifan Yang;
Shandian Zhe;
Jian Wang;
Gribskov, Michael;
Yuan Qi

Publication type:

Article

Hierarchical probabilistic models for multiple gene/variant associations based on next-generation sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3058, doi. 10.1093/bioinformatics/btx355

By:

Vavoulis, Dimitrios V.;
Taylor, Jenny C.;
Schuh, Anna

Publication type:

Article

ISAMBARD: an open-source computational environment for biomolecular analysis, modelling and design.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3043, doi. 10.1093/bioinformatics/btx352

By:

Wood, Christopher W.;
Heal, Jack W.;
Thomson, Andrew R.;
Bartlett, Gail J.;
Ibarra, Amaurys A.;
Brady, R. Leo;
Sessions, Richard B.;
Woolfson, Derek N.

Publication type:

Article

Moran's / quantifies spatio-temporal pattern formation in neural imaging data.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3072, doi. 10.1093/bioinformatics/btx351

By:

Schmal, Christoph;
Jihwan Myung;
Herzel, Hanspeter;
Bordyugov, Grigory

Publication type:

Article

DeepSite: protein-binding site predictor using 3D-convolutional neural networks.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3036, doi. 10.1093/bioinformatics/btx350

By:

Jiménez, J.;
Doerr, S.;
Martínez-Rosell, G.;
Rose, A. S.;
De Fabritiis, G.

Publication type:

Article

COMPASS: the COMPletely Arbitrary Sequence Simulator.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3101, doi. 10.1093/bioinformatics/btx347

By:

Low, Andrew;
Rodrigue, Nicolas;
Wong, Alex

Publication type:

Article

karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3088, doi. 10.1093/bioinformatics/btx346

By:

Gel, Bernat;
Serra, Eduard

Publication type:

Article

Protein-Sol: a web tool for predicting protein solubility from sequence.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3098, doi. 10.1093/bioinformatics/btx345

By:

Hebditch, Max;
Carballo-Amador, M. Alejandro;
Charonis, Spyros;
Curtis, Robin;
Warwicker, Jim

Publication type:

Article

Computational modeling of immune system of the fish for a more effective vaccination in aquaculture.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3065, doi. 10.1093/bioinformatics/btx341

By:

Madonia, Alice;
Melchiorri, Cristiano;
Bonamano, Simone;
Marcelli, Marco;
Bulfon, Chiara;
Castiglione, Filippo;
Galeotti, Marco;
Volpatti, Donatella;
Mosca, Francesco;
Tiscar, Pietro-Giorgio;
Romano, Nicla

Publication type:

Article

M2Align: parallel multiple sequence alignment with a multi-objective metaheuristic.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3011, doi. 10.1093/bioinformatics/btx338

By:

Zambrano-Vega, Cristian;
Nebro, Antonio J.;
García-Nieto, José;
Aldana-Montes, José F.

Publication type:

Article

ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3123, doi. 10.1093/bioinformatics/btx337

By:

Gardeux, Vincent;
David, Fabrice P. A.;
Shajkofci, Adrian;
Schwalie, Petra C.;
Deplancke, Bart

Publication type:

Article

DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3003, doi. 10.1093/bioinformatics/btx336

By:

Wenxiu Ma;
Lin Yang;
Rohs, Remo;
Stafford Noble, William

Publication type:

Article

CWDPRNP: a tool for cervid prion sequence analysis in program R.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3096, doi. 10.1093/bioinformatics/btx333

By:

Miller, William L.;
Walter, W. David

Publication type:

Article

Structurexplor: a platform for the exploration of structural features of RNA secondary structures.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3117, doi. 10.1093/bioinformatics/btx323

By:

Séhi Glouzon, Jean-Pierre;
Perreault, Jean-Pierre;
Wang, Shengrui

Publication type:

Article

DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 2986, doi. 10.1093/bioinformatics/btx316

By:

Pavlovic, Milos;
Ray, Pradipta;
Pavlovic, Kristina;
Kotamarti, Aaron;
Min Chen;
Zhang, Michael Q.

Publication type:

Article

Application of the cghRA framework to the genomic characterization of Diffuse Large B-Cell Lymphoma.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 2977, doi. 10.1093/bioinformatics/btx309

By:

Mareschal, Sylvain;
Ruminy, Philippe;
Alcantara, Marion;
Villenet, Céline;
Figeac, Martin;
Dubois, Sydney;
Bertrand, Philippe;
Bouzelfen, Abdelilah;
Viailly, Pierre-Julien;
Penther, Dominique;
Tilly, Hervé;
Bastard, Christian;
Jardin, Fabrice

Publication type:

Article