Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 18

Results: 33

Message from the ISCB: The 5th ISCB Wikipedia competition: coming to a classroom near you?

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2969, doi. 10.1093/bioinformatics/btw671

By:

Kilpatrick, Alastair

Publication type:

Article

ISCB's initial reaction to New England Journal of Medicine editorial on data sharing.

Published in:

2017

By:

Berger, Bonnie;
Gaasterland, Theresa;
Lengauer, Thomas;
Orengo, Christine A.;
Gaeta, Bruno;
Markel, Scott;
Valencia, Alfonso

Publication type:

Editorial

SpaceScanner: COPASI wrapper for automated management of global stochastic optimization experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2966, doi. 10.1093/bioinformatics/btx363

By:

Elsts, Atis;
Pentjuss, Agris;
Stalidzans, Egils

Publication type:

Article

CRISPRcloud: a secure cloud-based pipeline for CRISPR pooled screen deconvolution.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2963, doi. 10.1093/bioinformatics/btx335

By:

Hyun-Hwan Jeong;
Seon Young Kim;
Rousseaux, Maxime W. C.;
Zoghbi, Huda Y.;
Zhandong Liu

Publication type:

Article

HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens.

Published in:

2017

By:

Scheeder, Christian;
Heigwer, Florian;
Boutros, Michael

Publication type:

Product Review

Phantom: investigating heterogeneous gene sets in time-course data.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2957, doi. 10.1093/bioinformatics/btx348

By:

Jinghua Gu;
Xuan Wang;
Jinyan Chan;
Baldwin, Nicole E.;
Turner, Jacob A.

Publication type:

Article

chimeraviz: a tool for visualizing chimeric RNA.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2954, doi. 10.1093/bioinformatics/btx329

By:

Lågstad, Stian;
Sen Zhao;
Hoff, Andreas M.;
Johannessen, Bjarne;
Lingjærde, Ole Christian;
Skotheim, Rolf I.

Publication type:

Article

SinCHet: a MATLAB toolbox for single cell heterogeneity analysis in cancer.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2951, doi. 10.1093/bioinformatics/btx297

By:

Jiannong Li;
Smalley, Inna;
Schell, Michael J.;
Smalley, Keiran S. M.;
Chen, Y. Ann

Publication type:

Article

PASTASpark: multiple sequence alignment meets Big Data.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2948, doi. 10.1093/bioinformatics/btx354

By:

Abuín, José M.;
Pena, Tomás F.;
Pichel, Juan C.

Publication type:

Article

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2946, doi. 10.1093/bioinformatics/btx324

By:

Kreft, Łukasz;
Botzki, Alexander;
Coppens, Frederik;
Vandepoele, Klaas;
Van Bel, Michiel

Publication type:

Article

Spliceman2: a computational web server that predicts defects in pre-mRNA splicing.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2943, doi. 10.1093/bioinformatics/btx343

By:

Cygan, Kamil Jan;
Sanford, Clayton Hendrick;
Fairbrother, William Guy

Publication type:

Article

Flexbar 3.0 - SIMD and multicore parallelization.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2941, doi. 10.1093/bioinformatics/btx330

By:

Roehr, Johannes T.;
Dieterich, Christoph;
Reinert, Knut

Publication type:

Article

UpSetR: an R package for the visualization of intersecting sets and their properties.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2938, doi. 10.1093/bioinformatics/btx364

By:

Conway, Jake R.;
Lex, Alexander;
Gehlenborg, Nils

Publication type:

Article

FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2936, doi. 10.1093/bioinformatics/btx353

By:

Byoungnam Min;
Grigoriev, Igor V.;
In-Geol Choi

Publication type:

Article

OMTools: a software package for visualizing and processing optical mapping data.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2933, doi. 10.1093/bioinformatics/btx317

By:

Alden King-Yung Leung;
Nana Jin;
Yip, Kevin Y.;
Ting-Fun Chan

Publication type:

Article

Single-cell regulome data analysis by SCRAT.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2930, doi. 10.1093/bioinformatics/btx315

By:

Zhicheng Ji;
Weiqiang Zhou;
Hongkai Ji

Publication type:

Article

McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2924, doi. 10.1093/bioinformatics/btx286

By:

Tickotsky, Nili;
Sagiv, Tal;
Prilusky, Jaime;
Shifrut, Eric;
Friedman, Nir

Publication type:

Article

MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2914, doi. 10.1093/bioinformatics/btx334

By:

Bernstein, Matthew N.;
AnHai Doan;
Dewey, Colin N.

Publication type:

Article

Differential privacy-based evaporative cooling feature selection and classification with relief-F and random forests.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2906, doi. 10.1093/bioinformatics/btx298

By:

Le, Trang T.;
Simmons, W. Kyle;
Misaki, Masaya;
Bodurka, Jerzy;
White, Bill C.;
Savitz, Jonathan;
McKinney, Brett A.

Publication type:

Article

A method for learning a sparse classifier in the presence of missing data for high-dimensional biological datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2897, doi. 10.1093/bioinformatics/btx224

By:

Severson, Kristen A.;
Monian, Brinda;
Love, J. Christopher;
Braatz, Richard D.

Publication type:

Article

Molecular heterogeneity at the network level: high-dimensional testing, clustering and a TCGA case study.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2890, doi. 10.1093/bioinformatics/btx322

By:

Städler, Nicolas;
Dondelinger, Frank;
Hill, Steven M.;
Akbani, Rehan;
Yiling Lu;
Mills, Gordon B.;
Mukherjee, Sach

Publication type:

Article

IGESS: a statistical approach to integrating individual-level genotype data and summary statistics in genome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2882, doi. 10.1093/bioinformatics/btx314

By:

Mingwei Dai;
Jingsi Ming;
Mingxuan Cai;
Jin Liu;
Can Yang;
Xiang Wan;
Zongben Xu

Publication type:

Article

False discovery rate control incorporating phylogenetic tree increases detection power in microbiome-wide multiple testing.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2873, doi. 10.1093/bioinformatics/btx311

By:

Jian Xiao;
Hongyuan Cao;
Jun Chen

Publication type:

Article

Accelerating high-dimensional clustering with lossless data reduction.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2867, doi. 10.1093/bioinformatics/btx328

By:

Qaqish, Bahjat F.;
O'Brien, Jonathon J.;
Hibbard, Jonathan C.;
Clowers, Katie J.

Publication type:

Article

Predicting accurate contacts in thousands of Pfam domain families using PconsC3.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2859, doi. 10.1093/bioinformatics/btx332

By:

Michel, Mirco;
Skwark, Marcin J.;
Hurtado, David Menéndez;
Ekeberg, Magnus;
Elofsson, Arne

Publication type:

Article

RNAblueprint: flexible multiple target nucleic acid sequence design.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2850, doi. 10.1093/bioinformatics/btx263

By:

Hammer, Stefan;
Tschiatschek, Birgit;
Flamm, Christoph;
Hofacker, Ivo L.;
Findeiß, Sven

Publication type:

Article

Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2842, doi. 10.1093/bioinformatics/btx218

By:

Heffernan, Rhys;
Yuedong Yang;
Paliwal, Kuldip;
Yaoqi Zhou

Publication type:

Article

Multi-label classifier based on histogram of gradients for predicting the anatomical therapeutic chemical class/classes of a given compound.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2837, doi. 10.1093/bioinformatics/btx278

By:

Nanni, Loris;
Brahnam, Sheryl

Publication type:

Article

A fast and exhaustive method for heterogeneity and epistasis analysis based on multi-objective optimization.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2829, doi. 10.1093/bioinformatics/btx339

By:

Xiong Li

Publication type:

Article

GLANET: genomic loci annotation and enrichment tool.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2818, doi. 10.1093/bioinformatics/btx326

By:

Otlu, Burçak;
Firtina, Can;
Keleş, Sündüz;
Tastan, Oznur

Publication type:

Article

E²FM: an encrypted and compressed full-text index for collections of genomic sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2808, doi. 10.1093/bioinformatics/btx313

By:

Montecuollo, Ferdinando;
Schmid, Giovannni;
Tagliaferri, Roberto

Publication type:

Article

The spike-and-slab lasso Cox model for survival prediction and associated genes detection.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2799, doi. 10.1093/bioinformatics/btx300

By:

Zaixiang Tang;
Yueping Shen;
Xinyan Zhang;
Nengjun Yi

Publication type:

Article

Reliability of algorithmic somatic copy number alteration detection from targeted capture data.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2791, doi. 10.1093/bioinformatics/btx284

By:

Rieber, Nora;
Bohnert, Regina;
Ziehm, Ulrike;
Jansen, Gunther

Publication type:

Article