Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 17

Results: 36

Molecular signatures that can be transferred across different omics platforms.

Published in:: 2017
Publication type:: Correction Notice

Kollector: transcript-informed, targeted de novo assembly of gene loci.

Published in:: 2017
Publication type:: Correction Notice

PROXiMATE: a database of mutant protein-protein complex thermodynamics and kinetics.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2787, doi. 10.1093/bioinformatics/btx312

By:

Jemimah, Sherlyn;
Yugandhar, K.;
Gromiha, M. Michael

Publication type:

Article

STOPGAP: a database for systematic target opportunity assessment by genetic association predictions.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2784, doi. 10.1093/bioinformatics/btx274

By:

Judong Shen;
Kijoung Song;
Nelson, Matthew R.;
Slater, Andrew J.;
Ferrero, Enrico

Publication type:

Article

MAGenTA: a Galaxy implemented tool for complete Tn-Seq analysis and data visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2781, doi. 10.1093/bioinformatics/btx320

By:

McCoy, Katherine Maia;
Antonio, Margaret L.;
van Opijnen, Tim

Publication type:

Article

PopFly: the Drosophila population genomics browser.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2779, doi. 10.1093/bioinformatics/btx301

By:

Hervas, Sergi;
Casillas, Sònia;
Barbadilla, Antonio;
Sanz, Esteve;
Pool, John E.

Publication type:

Article

FlashPCA2: principal component analysis of Biobank-scale genotype datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2776, doi. 10.1093/bioinformatics/btx299

By:

Abraham, Gad;
Inouye, Michael;
Yixuan Qiu

Publication type:

Article

RankProd 2.0: a refactored bioconductor package for detecting differentially expressed features in molecular profiling datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2774, doi. 10.1093/bioinformatics/btx292

By:

Del Carratore, Francesco;
Breitling, Rainer;
Jankevics, Andris;
Eisinga, Rob;
Heskes, Tom;
Fangxin Hong

Publication type:

Article

veqtl-mapper: variance association mapping for molecular phenotypes.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2772, doi. 10.1093/bioinformatics/btx273

By:

Brown, Andrew Anand

Publication type:

Article

MD-TASK: a software suite for analyzing molecular dynamics trajectories.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2768, doi. 10.1093/bioinformatics/btx349

By:

Brown, David K.;
Penkler, David L.;
Amamuddy, Olivier Sheik;
Ross, Caroline;
Bishop, Özlem Tastan;
Atilgan, Ali Rana

Publication type:

Article

Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2765, doi. 10.1093/bioinformatics/btx283

By:

Kleffner, Robert;
Cooper, Seth;
Khatib, Firas;
Flatten, Jeff;
Leaver-Fay, Andrew;
Baker, David;
Siegel, Justin B.

Publication type:

Article

MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2762, doi. 10.1093/bioinformatics/btx307

By:

Expósito, Roberto R.;
Veiga, Jorge;
González-Domínguez, Jorge;
Touriño, Juan

Publication type:

Article

KMC 3: counting and manipulating k-mer statistics.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2759, doi. 10.1093/bioinformatics/btx304

By:

Kokot, Marek;
Długosz, Maciej;
Deorowicz, Sebastian

Publication type:

Article

POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2756, doi. 10.1093/bioinformatics/btx302

By:

Jiawei Wang;
Revote, Jerico;
Lithgow, Trevor;
Song, Jiangning;
Bingjiao Yang;
Leier, André;
Marquez-Lago, Tatiana T.;
Webb, Geoffrey;
Kuo-Chen Chou

Publication type:

Article

modlAMP: Python for antimicrobial peptides.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2753, doi. 10.1093/bioinformatics/btx285

By:

Müller, Alex T.;
Gabernet, Gisela;
Hiss, Jan A.;
Schneider, Gisbert

Publication type:

Article

rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2750, doi. 10.1093/bioinformatics/btx279

By:

Bo Liu;
Tao Jiang;
Junyi Li;
Yadong Wang;
Yiu, S. M.

Publication type:

Article

emMAW: computing minimal absent words in external memory.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2746, doi. 10.1093/bioinformatics/btx209

By:

Héliou, Alice;
Pissis, Solon P.;
Puglisi, Simon J.

Publication type:

Article

twoddpcr: an R/Bioconductor package and Shiny app for Droplet Digital PCR analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2743, doi. 10.1093/bioinformatics/btx308

By:

Chiu, Anthony;
Ayub, Mahmood;
Dive, Caroline;
Brady, Ged;
Miller, Crispin J.

Publication type:

Article

OMSim: a simulator for optical map data.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2740, doi. 10.1093/bioinformatics/btx293

By:

Miclotte, Giles;
Audenaert, Pieter;
Fostier, Jan;
Rombauts, Stephane;
de Peer, Yves Van;
Plaisance, Stéphane

Publication type:

Article

Assembling draft genomes using contiBAIT.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2737, doi. 10.1093/bioinformatics/btx281

By:

O'Neill, Kieran;
Karsan, Aly;
Gottlieb, Mike;
Lansdorp, Peter M.;
Hills, Mark;
Borkowski, Matthew

Publication type:

Article

On patterns and re-use in bioinformatics databases.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2731, doi. 10.1093/bioinformatics/btx310

By:

Bell, Michael J.;
Lord, Phillip

Publication type:

Article

Neuro-symbolic representation learning on biological knowledge graphs.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2723, doi. 10.1093/bioinformatics/btx275

By:

Alshahrani, Mona;
Khan, Mohammad Asif;
Hoehndorf, Robert;
Maddouri, Omar;
Kinjo, Akira R.;
Queralt-Rosinach, Nùria

Publication type:

Article

PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2715, doi. 10.1093/bioinformatics/btx305

By:

Smith, Richard D.;
Jian Ma;
Casey, Cameron P.;
Xueyun Zheng;
Ibrahim, Yehia M.;
Wilkins, Christopher S.;
Renslow, Ryan S.;
Thomas, Dennis G.;
Payne, Samuel H.;
Monroe, Matthew E.;
Baker, Erin S.;
Metz, Thomas O.;
Teeguarden, Justin G.

Publication type:

Article

Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2706, doi. 10.1093/bioinformatics/btx176

By:

Qianqian Shi;
Minrui Peng;
Xiangtian Yu;
Tao Zeng;
Luonan Chen;
Chuanchao Zhang;
Juan Liu

Publication type:

Article

Network module-based model in the differential expression analysis for RNA-seq.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2699, doi. 10.1093/bioinformatics/btx214

By:

Mingli Lei;
Jia Xu;
Jing Li;
Li-Ching Huang;
Lily Wang

Publication type:

Article

Entropy-based consensus clustering for patient stratification.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2691, doi. 10.1093/bioinformatics/btx167

By:

Hongfu Liu;
Yun Fu;
Rui Zhao;
Hongsheng Fang;
Yang-Yu Liu;
Feixiong Cheng

Publication type:

Article

EigenTHREADER: analogous protein fold recognition by efficient contact map threading.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2684, doi. 10.1093/bioinformatics/btx217

By:

Buchan, Daniel W. A.;
Jones, David T.

Publication type:

Article

A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2675, doi. 10.1093/bioinformatics/btx296

By:

Dapeng Xiong;
Haipeng Gong;
Jianyang Zeng

Publication type:

Article

RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2666, doi. 10.1093/bioinformatics/btx287

By:

Tsukasa Fukunaga;
Michiaki Hamada

Publication type:

Article

HLA class I binding prediction via convolutional neural networks.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2658, doi. 10.1093/bioinformatics/btx264

By:

Vang, Yeeleng S.;
Xiaohui Xie

Publication type:

Article

Accounting for tumor purity improves cancer subtype classification from DNA methylation data.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2651, doi. 10.1093/bioinformatics/btx303

By:

Xiaoqi Zheng;
Weiwei Zhang;
Hao Feng;
Hao Wu

Publication type:

Article

An efficient graph kernel method for non-coding RNA functional prediction.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2642, doi. 10.1093/bioinformatics/btx295

By:

Navarin, Nicolò;
Costa, Fabrizio

Publication type:

Article

EBT: a statistic test identifying moderate size of significant features with balanced power and precision for genome-wide rate comparisons.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2631, doi. 10.1093/bioinformatics/btx294

By:

Xinjie Hui;
Yueming Hu;
Xingsheng Shu;
Rongfei Han;
Yejun Wang;
Ming-An Sun;
Qinggang Ge

Publication type:

Article

Annotating function to differentially expressed LincRNAs in myelodysplastic syndrome using a network-based method.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2622, doi. 10.1093/bioinformatics/btx280

By:

Keqin Liu;
Liang Liu;
Weiling Zhao;
Xiaobo Zhou;
Thoms, Julie A. I.;
Beck, Dominik;
Pimanda, John E.

Publication type:

Article

SigSeeker: a peak-calling ensemble approach for constructing epigenetic signatures.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2615, doi. 10.1093/bioinformatics/btx276

By:

Lichtenberg, Jens;
Bodine, David M.;
Elnitski, Laura

Publication type:

Article

Exploring spatially adjacent TFBS-clustered regions with Hi-C data.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2611, doi. 10.1093/bioinformatics/btx282

By:

Hebing Chen;
Shuai Jiang;
Zhuo Zhang;
Hao Li;
Yiming Lu;
Xiaochen Bo

Publication type:

Article