Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 15

Results: 36

A transition-based joint model for disease named entity recognition and normalization.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2363, doi. 10.1093/bioinformatics/btx172

By:

Yinxia Lou;
Yue Zhang;
Tao Qian;
Fei Li;
Shufeng Xiong;
Donghong Ji

Publication type:

Article

The International Society for Computational Biology and WikiProject Computational Biology: celebrating 10 years of collaboration towards open access.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2429, doi. 10.1093/bioinformatics/btx388

By:

O'neill, Kieran;
Rai, Vivek;
Kilpatrick, Alastair M.

Publication type:

Article

rMSI: an R package for MS imaging data handling and visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2427, doi. 10.1093/bioinformatics/btx182

By:

Ràfols, Pere;
Torres, Sònia;
Ramírez, Noelia;
Del Castillo, Esteban;
Yanes, Oscar;
Brezmes, Jesús;
Correig, Xavier

Publication type:

Article

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2424, doi. 10.1093/bioinformatics/btx180

By:

Arganda-Carreras, Ignacio;
Kaynig, Verena;
Rueden, Curtis;
Eliceiri, Kevin W.;
Schindelin, Johannes;
Cardona, Albert;
Seung, H. Sebastian

Publication type:

Article

Phenopolis: an open platform for harmonization and analysis of genetic and phenotypic data.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2421, doi. 10.1093/bioinformatics/btx147

By:

Pontikos, Nikolas;
Jing Yu;
Moghul, Ismail;
Withington, Lucy;
Blanco-Kelly, Fiona;
Vulliamy, Tom;
Wong, Tsz Lun Ernest;
Murphy, Cian;
Cipriani, Valentina;
Fiorentino, Alessia;
Arno, Gavin;
Greene, Daniel;
Jacobsen, Julius O. B.;
Clark, Tristan;
Gregory, David S.;
Nemeth, Andrea M.;
Halford, Stephanie;
Inglehearn, Chris F.;
Downes, Susan;
Black, Graeme C.

Publication type:

Article

MetCirc: navigating mass spectral similarity in high-resolution MS/MS metabolomics data.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2419, doi. 10.1093/bioinformatics/btx159

By:

Naake, Thomas;
Gaquerel, Emmanuel

Publication type:

Article

Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2416, doi. 10.1093/bioinformatics/btx185

By:

Mundy, Michael;
Mendes-Soares, Helena;
Chia, Nicholas

Publication type:

Article

SynergyFinder: a web application for analyzing drug combination dose-response matrix data.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2413, doi. 10.1093/bioinformatics/btx162

By:

Ianevski, Aleksandr;
He, Liye;
Aittokallio, Tero;
Jing Tang

Publication type:

Article

CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2410, doi. 10.1093/bioinformatics/btx161

By:

Flobak, Åsmund;
Vazquez, Miguel;
Lægreid, Astrid;
Valencia, Alfonso

Publication type:

Article

EUPAN enables pan-genome studies of a large number of eukaryotic genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2408, doi. 10.1093/bioinformatics/btx170

By:

Zhiqiang Hu;
Chen Sun;
Kuang-Chen Lu;
Xixia Chu;
Yue Zhao;
Jinyuan Lu;
Jianxin Shi;
Chaochun Wei

Publication type:

Article

biMM: efficient estimation of genetic variances and covariances for cohorts with high-dimensional phenotype measurements.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2405, doi. 10.1093/bioinformatics/btx166

By:

Pirinen, Matti;
Benner, Christian;
Marttinen, Pekka;
Järvelin, Marjo-Riitta;
Rivas, Manuel A.;
Ripatti, Samuli

Publication type:

Article

EthSEQ: ethnicity annotation from whole exome sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2402, doi. 10.1093/bioinformatics/btx165

By:

Romanel, Alessandro;
Tuo Zhang;
Elemento, Olivier;
Demichelis, Francesca

Publication type:

Article

StrandScript: evaluation of Illumina genotyping array design and strand correction.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2399, doi. 10.1093/bioinformatics/btx186

By:

Jing Wang;
Samuels, David C.;
Yu Shyr;
Yan Guo

Publication type:

Article

The Tomato Expression Atlas.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2397, doi. 10.1093/bioinformatics/btx190

By:

Fernandez-Pozo, Noe;
Yi Zheng;
Snyder, Stephen I.;
Nicolas, Philippe;
Yoshihito Shinozaki;
Zhangjun Fei;
Catala, Carmen;
Giovannoni, James J.;
Rose, Jocelyn K. C.;
Mueller\, Lukas A.

Publication type:

Article

Cpipe: a comprehensive computational platform for sequence and structure-based analyses of Cysteine residues.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2395, doi. 10.1093/bioinformatics/btx181

By:

Soylu, Inanc;
Marino, Stefano M.

Publication type:

Article

IcyTree: rapid browser-based visualization for phylogenetic trees and networks.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2392, doi. 10.1093/bioinformatics/btx155

By:

Vaughan, Timothy G.

Publication type:

Article

PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2389, doi. 10.1093/bioinformatics/btx184

By:

Torres, Pedro J.;
Edwards, Robert A.;
Mcnair, Katelyn A.

Publication type:

Article

SieveSifter: a web-based tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2386, doi. 10.1093/bioinformatics/btx168

By:

Fiore-Gartland, Andrew;
Kullman, Nicholas;
Decamp, Allan C.;
Clenaghan, Graham;
Wayne Yang;
Magaret, Craig A.;
Edlefsen, Paul T.;
Gilbert, Peter B.

Publication type:

Article

modSaRa: a computationally efficient R package for CNV identification.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2384, doi. 10.1093/bioinformatics/btx212

By:

Feifei Xiao;
Yue Niu;
Ning Hao;
Yanxun Xu;
Zhilin Jin;
Heping Zhang

Publication type:

Article

annotatr: genomic regions in context.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2381, doi. 10.1093/bioinformatics/btx183

By:

Cavalcante, Raymond G.;
Sartor, Maureen A.

Publication type:

Article

ViPTree: the viral proteomic tree server.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2379, doi. 10.1093/bioinformatics/btx157

By:

Yosuke Nishimura;
Takashi Yoshida;
Megumi Kuronishi;
Hideya Uehara;
Hiroyuki Ogata;
Susumu Goto

Publication type:

Article

Mining heterogeneous causal effects for personalized cancer treatment.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2372, doi. 10.1093/bioinformatics/btx174

By:

Weijia Zhang;
Thuc Duy Le;
Lin Liu;
Zhi-Hua Zhou;
Jiuyong Li

Publication type:

Article

CMDR based differential evolution identifies the epistatic interaction in genome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2354, doi. 10.1093/bioinformatics/btx163

By:

Cheng-Hong Yang;
Li-Yeh Chuang;
Yu-Da Lin

Publication type:

Article

Sequential computation of elementary modes and minimal cut sets in genome-scale metabolic networks using alternate integer linear programming.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2345, doi. 10.1093/bioinformatics/btx171

By:

Hyun-Seob Song;
Goldberg, Noam;
Mahajan, Ashutosh;
Ramkrishna, Doraiswami

Publication type:

Article

Deep mining heterogeneous networks of biomedical linked data to predict novel drug-target associations.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2337, doi. 10.1093/bioinformatics/btx160

By:

Nansu Zong;
Hyeoneui Kim;
Ngo, Victoria;
Harismendy, Olivier

Publication type:

Article

A Zoom-Focus algorithm (ZFA) to locate the optimal testing region for rare variant association tests.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2330, doi. 10.1093/bioinformatics/btx130

By:

Maggie Haitian Wang;
Haoyi Weng;
Rui Sun;
Jack Lee;
Wu, William Ka Kei;
Ka Chun Chong;
Benny Chung-Ying Zee

Publication type:

Article

Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2322, doi. 10.1093/bioinformatics/btx133

By:

Wu, Steven H.;
Schwartz, Rachel S.;
Winter, David J.;
Conrad, Donald F.;
Cartwright, Reed A.

Publication type:

Article

SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2314, doi. 10.1093/bioinformatics/btx194

By:

Hirotaka Matsumoto;
Hisanori Kiryu;
Chikara Furusawa;
Ko, Minoru S. H.;
Ko, Shigeru B. H.;
Norio Gouda;
Tetsutaro Hayashi;
Itoshi Nikaido

Publication type:

Article

Enhanced methods to detect haplotypic effects on gene expression.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2307, doi. 10.1093/bioinformatics/btx142

By:

Brown, Robert;
Kichaev, Gleb;
Mancuso, Nicholas;
Boocock, James;
Pasaniuc, Bogdan

Publication type:

Article

NeBcon: protein contact map prediction using neural network training coupled with naïve Bayes classifiers.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2296, doi. 10.1093/bioinformatics/btx164

By:

Baoji He;
Mortuza, S. M.;
Yanting Wang;
Hong-Bin Shen;
Yang Zhang

Publication type:

Article

BEESEM: estimation of binding energy models using HT-SELEX data.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2288, doi. 10.1093/bioinformatics/btx191

By:

Shuxiang Ruan;
Swamidass, S. Joshua;
Stormo, Gary D.

Publication type:

Article

Kart: a divide-and-conquer algorithm for NGS read alignment.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2281, doi. 10.1093/bioinformatics/btx189

By:

Hsin-Nan Lin;
Wen-Lian Hsu

Publication type:

Article

SQC: secure quality control for meta-analysis of genome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2273, doi. 10.1093/bioinformatics/btx193

By:

Zhicong Huang;
Huang Lin;
Fellay, Jacques;
Kutalik, Zoltán;
Hubaux, Jean-Pierre

Publication type:

Article

cnAnalysis450k: an R package for comparative analysis of 450k/EPIC Illumina methylation array derived copy number data.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2266, doi. 10.1093/bioinformatics/btx156

By:

Knoll, Maximilian;
Debus, Jürgen;
Abdollahi, Amir

Publication type:

Article

GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2258, doi. 10.1093/bioinformatics/btx150

By:

Stricker, Georg;
Engelhardt, Alexander;
Schulz, Daniel;
Schmid, Matthias;
Tresch, Achim;
Gagneur, Julien

Publication type:

Article

SeqArray--a storage-efficient high-performance data format for WGS variant calls.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2251, doi. 10.1093/bioinformatics/btx145

By:

Xiuwen Zheng;
Gogarten, Stephanie M.;
Lawrence, Michael;
Stilp, Adrienne;
Conomos, Matthew P.;
Weir, Bruce S.;
Laurie, Cathy;
Levine, David

Publication type:

Article